Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

55552729 .. 55553106

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0415800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAACTCGTTGGGTTACTCCTTCAATGAACTTGTTGCCTTGTGGGAGAAGAAAATTGGCAAAGTACTTGACAAGGTCTATGTCCCAGAAGAAAAACTCCTCGACGATATTATAGCGACCCCATTTCCAGAAAATGTGATTTTGGGAATCAACCACTCTGTGTTTGTGAAAGGAGATCTTACTAACTTTGAGATTGAGCCATCGATCGGAGTCGAAGCTTTCGAGCTATACCCAGATGTTGAATACACCACTGTTGAGGACTACCTCGACCGATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

93

Amino Acids

10.64

Weight (kDa)

4.21

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	6 - 89	6.1e-20	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	25, 242
AluBI	AGCT	2 cut(s)	218, 226
AluI	AGCT	2 cut(s)	218, 226
BccI	CCATC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	89
Bsh1285I	CGRYCG	2 cut(s)	207, 271
BshVI	ATCGAT	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	207, 271
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	175, 204
BspDI	ATCGAT	1 cut(s)	203
BssMI	GATC	2 cut(s)	175, 204
Bst4CI	ACNGT	1 cut(s)	253
BstKTI	GATC	2 cut(s)	178, 207
BstMBI	GATC	2 cut(s)	175, 204
BstMCI	CGRYCG	2 cut(s)	207, 271
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	65
CviJI	RGCY	3 cut(s)	199, 218, 226
CviKI_1	RGCY	3 cut(s)	199, 218, 226
CviQI	GTAC	1 cut(s)	65
DpnI	GATC	2 cut(s)	177, 206
DpnII	GATC	2 cut(s)	175, 204
DraIII	CACNNNGTG	1 cut(s)	160
FaiI	YATR	3 cut(s)	81, 113, 229
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	2 cut(s)	147, 210
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	175, 204
LpnPI	CCDG	3 cut(s)	99, 141, 246
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	177, 206
MboI	GATC	2 cut(s)	175, 204
MboII	GAAGA	2 cut(s)	61, 101
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	110, 250, 275
MseI	TTAA	1 cut(s)	280
NdeII	GATC	2 cut(s)	175, 204
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	74
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	175, 204
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	219
SetI	ASST	4 cut(s)	78, 220, 228, 267
Sse9I	AATT	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	5 cut(s)	102, 203, 213, 222, 267
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	17, 42
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.