Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004642.1

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Reverse (-)

113968 .. 116890

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004642.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggacgcgctaagtctcgagctcttcctcctcctcctcttcttcttcctcactcgaactcatcgcctccttggcttcttccgcatcgacttcgtccagtccttcatctcacgcccctcaccaaattccgcgactccgaccccgcattttgcttcgaggaggacgagggtatcatccaggccgttctgtcttactctctcaaatcaaagcttggagtttgagaggaaggattcaattacgatgccggtcggagacgaagtccagcttcggaacgccattctctgtacaccagatctgtacgaagagggtctgaaagagaacttcaatactttccacggcaatttccagggcaatgatgatccaaaatgttcgcagggttcagatgatgaggaaggtgatgagagtggtcatgcaaccgggagtcagaatgagaaccccagtgtcaatcccaaatcttcaggaaactcgaaaaatggtaaatctttattgttacgttctgcaaccgatttgtttttctcacttgaaagcaggaacaaaattgttgagcttagacctgccggaaagattgcttcaggcataaccgagataccgttttctatgcatatcaggcaaccaaaagaagataacctcgaaaagttctatgagacgttccatggaggaaatattaacattcaggtgcatctttctgccttggaaagtacagatattctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

237

Amino Acids

26.57

Weight (kDa)

5.52

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccII	CGCG	2 cut(s)	8, 131
AciI	CCGC	3 cut(s)	82, 129, 143
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	2 cut(s)	441, 555
AfaI	GTAC	3 cut(s)	286, 299, 700
AgsI	TTSAA	3 cut(s)	234, 325, 524
AjnI	CCWGG	2 cut(s)	176, 345
AluBI	AGCT	4 cut(s)	22, 210, 265, 547
AluI	AGCT	4 cut(s)	22, 210, 265, 547
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	20, 246, 638
AlwI	GGATC	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	111, 407
AvaI	CYCGRG	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BceAI	ACGGC	2 cut(s)	166, 352
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	2 cut(s)	178, 347
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	20, 246, 638
BfmI	CTRYAG	1 cut(s)	710
BfuAI	ACCTGC	1 cut(s)	562
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	178, 347, 418
BmeT110I	CYCGRG	1 cut(s)	17
BmrFI	CCNGG	3 cut(s)	178, 347, 418
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	93, 231, 688
BmuI	ACTGGG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	418
BsaJI	CCNNGG	5 cut(s)	70, 334, 346, 652, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	97, 438
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	178, 347
BseDI	CCNNGG	5 cut(s)	70, 334, 346, 652, 690
BseGI	GGATG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	358
BseNI	ACTGG	2 cut(s)	97, 438
BseRI	GAGGAG	4 cut(s)	20, 23, 26, 172
Bsh1236I	CGCG	2 cut(s)	8, 131
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	245, 417, 558
BsmAI	GTCTC	3 cut(s)	20, 246, 638
BsmBI	CGTCTC	2 cut(s)	246, 638
BsnI	GGCC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	292, 358
Bsp19I	CCATGG	1 cut(s)	652
BspACI	CCGC	3 cut(s)	82, 129, 143
BspANI	GGCC	1 cut(s)	181
BspFNI	CGCG	2 cut(s)	8, 131
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	97, 438
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	5 cut(s)	70, 334, 346, 652, 690
BssMI	GATC	2 cut(s)	292, 358
BssT1I	CCWWGG	3 cut(s)	70, 652, 690
Bst2UI	CCWGG	2 cut(s)	178, 347
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	3 cut(s)	29, 44, 297
BstAUI	TGTACA	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	11, 548
BstDSI	CCRYGG	2 cut(s)	334, 652
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	2 cut(s)	8, 131
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	295, 361
BstMAI	GTCTC	3 cut(s)	20, 246, 638
BstMBI	GATC	2 cut(s)	292, 358
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 81, 607
BstNI	CCWGG	2 cut(s)	178, 347
BstSCI	CCNGG	3 cut(s)	176, 345, 416
BstSFI	CTRYAG	1 cut(s)	710
BstUI	CGCG	2 cut(s)	8, 131
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	2 cut(s)	334, 652
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	562
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	244
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	3 cut(s)	285, 298, 699
CviAII	CATG	2 cut(s)	410, 653
CviJI	RGCY	6 cut(s)	22, 75, 181, 210, 265, 547
CviKI_1	RGCY	6 cut(s)	22, 75, 181, 210, 265, 547
CviQI	GTAC	3 cut(s)	285, 298, 699
DdeI	CTNAG	2 cut(s)	11, 548
DpnI	GATC	2 cut(s)	294, 360
DpnII	GATC	2 cut(s)	292, 358
Eam1104I	CTCTTC	3 cut(s)	29, 44, 297
EarI	CTCTTC	3 cut(s)	29, 44, 297
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	3 cut(s)	70, 652, 690
Eco24I	GRGCYC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	441, 555
Eco88I	CYCGRG	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	176, 345
EcoT14I	CCWWGG	3 cut(s)	70, 652, 690
EcoT22I	ATGCAT	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	3 cut(s)	70, 652, 690
Esp3I	CGTCTC	2 cut(s)	246, 638
FaeI	CATG	2 cut(s)	413, 656
FaiI	YATR	6 cut(s)	411, 578, 599, 603, 642, 654
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	2 cut(s)	409, 652
FauI	CCCGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	24
GlaI	GCGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	3 cut(s)	245, 417, 558
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	413, 656
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	3 cut(s)	133, 230, 421
HpaII	CCGG	3 cut(s)	245, 417, 558
HphI	GGTGA	2 cut(s)	111, 407
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	6 cut(s)	138, 251, 270, 312, 382, 426
Hpy188III	TCNNGA	2 cut(s)	17, 459
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	112, 220, 386
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	2 cut(s)	493, 647
HpyCH4V	TGCA	4 cut(s)	413, 500, 601, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 81, 607
HpyF3I	CTNAG	2 cut(s)	11, 548
HpySE526I	ACGT	2 cut(s)	493, 647
Hsp92II	CATG	2 cut(s)	413, 656
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	292, 358
LguI	GCTCTTC	1 cut(s)	29
LweI	GCATC	3 cut(s)	93, 231, 688
MaeII	ACGT	2 cut(s)	493, 647
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	2 cut(s)	294, 360
MboI	GATC	2 cut(s)	292, 358
MboII	GAAGA	8 cut(s)	16, 31, 34, 37, 70, 314, 447, 632
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	4 cut(s)	124, 234, 340, 537
MlyI	GAGTC	2 cut(s)	127, 430
MmeI	TCCRAC	2 cut(s)	161, 229
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	674
MspI	CCGG	3 cut(s)	245, 417, 558
MspR9I	CCNGG	3 cut(s)	178, 347, 418
MvaI	CCWGG	2 cut(s)	178, 347
MvnI	CGCG	2 cut(s)	8, 131
MwoI	GCNNNNNNNGC	3 cut(s)	72, 81, 607
NciI	CCSGG	1 cut(s)	418
NcoI	CCATGG	1 cut(s)	652
NdeII	GATC	2 cut(s)	292, 358
NlaIII	CATG	2 cut(s)	413, 656
NsiI	ATGCAT	1 cut(s)	603
PaeR7I	CTCGAG	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	2 cut(s)	92, 257
PleI	GAGTC	2 cut(s)	127, 429
PpsI	GAGTC	2 cut(s)	127, 429
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	176, 345
PspGI	CCWGG	2 cut(s)	176, 345
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	2 cut(s)	92, 257
RsaI	GTAC	3 cut(s)	286, 299, 700
RsaNI	GTAC	3 cut(s)	285, 298, 699
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	666
Sau3AI	GATC	2 cut(s)	292, 358
SchI	GAGTC	2 cut(s)	127, 430
ScrFI	CCNGG	3 cut(s)	178, 347, 418
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	93, 231, 688
SfcI	CTRYAG	1 cut(s)	710
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	4 cut(s)	124, 234, 340, 537
SsiI	CCGC	3 cut(s)	82, 129, 143
SspI	AATATT	1 cut(s)	664
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	176, 345, 416
StyI	CCWWGG	3 cut(s)	70, 652, 690
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	2 cut(s)	496, 650
TaqI	TCGA	6 cut(s)	18, 55, 87, 155, 467, 630
TasI	AATT	4 cut(s)	124, 234, 340, 537
TatI	WGTACW	2 cut(s)	284, 698
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	445
Tth111I	GACNNNGTC	2 cut(s)	92, 257
XapI	RAATTY	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.