Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Reverse (-)

951044 .. 953238

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGATTGAGCTCAAGCTTTCCCGGATTAATCGAGTTTATCGTCCTTCTGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTTCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCTGTCAACTTGCAGGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTGCCAAGCCTATTTCGATTCTGAACAAAATTGTTGAGCTTAGACCTGCTGGAAAGATTGCTTCAGGCATAACCGAGATACCGTTTTCTATGCATATCAGGCAACCAAGAGAAGATAACCTCGAAAAGTTCTATGAGACATTCCATGGAGGAAATATTAACATTCAGTATTTAGTGACTGTAGATATATCGAGAGGATACCTGTATAAGTCGTTATCTACAACAATGGAGTTCATAGTTGAAAGTGATAAAGCTGATGTAATTGAGCGACCAGTTTCTCCGGAGATGGTTGTCTTTTACATTACTCAGGATACCCAAAGACATCCGCTACTTCCTCAACTGAAATCAGGTGGATTTCGAATCATTGGAAAAATGGCCACTCAATGTTCTTTATCGGATCCCGTTAGTGGTGAACTAACAGTAGAAGCATCTGCAGTTCCAATATCTTCCATTGATATACACTTGCTTCGTGTAGAGTCAATCCTTCTAGGGGAGAAAATTGTGACTGAGAAGTCTGTGGTTCAAACTACACAGATAGCAGATGGAGATGTCTGTCATAATATGACTCTGCCCATTCATGTTATACTTCCCCGTCTTTTGACATGTCCTACAGTCTCAGCAGGGCCATTCTCGATTGAATTTAAAGTTGTCATAGTCATAACATTTCAGTCACAGGTAGCCAAATTGCATTCAAAATCTGAACCTACCACTCCCAGACTATGGCTTGCAATGGAGACTCTACCGCTTGAACTTGTTAGAACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

317

Amino Acids

34.97

Weight (kDa)

7.76

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	11 - 283	8.8e-29	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	697
Acc36I	ACCTGC	2 cut(s)	133, 241
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccII	CGCG	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	3 cut(s)	119, 512, 929
AclWI	GGATC	3 cut(s)	136, 578, 591
AcoI	YGGCCR	2 cut(s)	159, 561
AcsI	RAATTY	2 cut(s)	108, 824
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	593, 676, 906
AflIII	ACRYGT	1 cut(s)	788
AgsI	TTSAA	6 cut(s)	93, 428, 710, 824, 879, 935
AluBI	AGCT	4 cut(s)	13, 19, 226, 440
AluI	AGCT	4 cut(s)	13, 19, 226, 440
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	4 cut(s)	167, 317, 805, 914
AlwI	GGATC	3 cut(s)	136, 578, 591
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	3 cut(s)	159, 561, 809
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	108, 824
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	608
AsuII	TTCGAA	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	75, 81
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	3 cut(s)	119, 466, 722
BceAI	ACGGC	1 cut(s)	174
BciVI	GTATCC	2 cut(s)	377, 490
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	4 cut(s)	167, 317, 805, 914
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	3 cut(s)	366, 618, 795
BfuAI	ACCTGC	2 cut(s)	133, 241
BfuI	GTATCC	2 cut(s)	377, 490
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	123, 623
BpiI	GAAGAC	2 cut(s)	75, 81
Bpu14I	TTCGAA	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	593, 676, 906
Bse1I	ACTGG	2 cut(s)	60, 458
Bse3DI	GCAATG	1 cut(s)	921
BseAI	TCCGGA	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	593, 676, 906
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	3 cut(s)	506, 684, 816
BseNI	ACTGG	2 cut(s)	60, 458
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	161, 563, 811
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	25, 162, 467
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	593, 676, 906
BsmAI	GTCTC	4 cut(s)	167, 317, 805, 914
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	3 cut(s)	161, 563, 811
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	3 cut(s)	69, 128, 583
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	3 cut(s)	119, 512, 929
BspANI	GGCC	3 cut(s)	161, 563, 811
BspCNI	CTCAG	3 cut(s)	505, 685, 815
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	585
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	2 cut(s)	133, 241
BspPI	GGATC	3 cut(s)	136, 578, 591
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	2 cut(s)	60, 458
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	69, 128, 583
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	4 cut(s)	270, 367, 607, 799
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	4 cut(s)	227, 492, 693, 802
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	72, 131, 586
BstMAI	GTCTC	4 cut(s)	167, 317, 805, 914
BstMBI	GATC	3 cut(s)	69, 128, 583
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	3 cut(s)	366, 618, 795
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	2 cut(s)	75, 81
BstX2I	RGATCY	2 cut(s)	128, 583
BstYI	RGATCY	2 cut(s)	128, 583
BstZI	CGGCCG	1 cut(s)	159
BsuI	GTATCC	2 cut(s)	377, 490
BsuRI	GGCC	3 cut(s)	161, 563, 811
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	508
BveI	ACCTGC	2 cut(s)	133, 241
Cac8I	GCNNGC	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	809
CviAII	CATG	3 cut(s)	332, 764, 789
DdeI	CTNAG	4 cut(s)	227, 492, 693, 802
DpnI	GATC	3 cut(s)	71, 130, 585
DpnII	GATC	3 cut(s)	69, 128, 583
DraI	TTTAAA	1 cut(s)	829
DrdI	GACNNNNNNGTC	1 cut(s)	697
DseDI	GACNNNNNNGTC	1 cut(s)	697
EaeI	YGGCCR	2 cut(s)	159, 561
EagI	CGGCCG	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	3 cut(s)	335, 767, 792
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	331, 763, 788
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	674
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	161, 563, 811
HapII	CCGG	3 cut(s)	25, 162, 467
Hin1II	CATG	3 cut(s)	335, 767, 792
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	205, 546, 662, 751, 922
HpaII	CCGG	3 cut(s)	25, 162, 467
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	136, 599
Hpy188I	TCNGA	4 cut(s)	52, 210, 583, 886
Hpy188III	TCNNGA	4 cut(s)	378, 467, 494, 817
Hpy8I	GTNNAC	2 cut(s)	136, 599
HpyAV	CCTTC	2 cut(s)	57, 680
HpyCH4III	ACNGT	4 cut(s)	270, 367, 607, 799
HpyCH4V	TGCA	5 cut(s)	142, 280, 620, 874, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	4 cut(s)	227, 492, 693, 802
Hsp92II	CATG	3 cut(s)	335, 767, 792
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	69, 128, 583
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	2 cut(s)	123, 623
MaeI	CTAG	1 cut(s)	674
MaeIII	GTNAC	3 cut(s)	361, 688, 855
MalI	GATC	3 cut(s)	71, 130, 585
MboI	GATC	3 cut(s)	69, 128, 583
MboII	GAAGA	4 cut(s)	75, 81, 311, 624
MflI	RGATCY	2 cut(s)	128, 583
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	6 cut(s)	108, 216, 447, 684, 824, 869
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	3 cut(s)	671, 745, 916
MnlI	CCTC	6 cut(s)	55, 146, 317, 329, 374, 531
Mox20I	TGGCCA	1 cut(s)	563
Mph1103I	ATGCAT	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	3 cut(s)	30, 345, 828
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	3 cut(s)	25, 162, 467
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	874
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	3 cut(s)	69, 128, 583
NlaIII	CATG	3 cut(s)	335, 767, 792
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	3 cut(s)	361, 688, 855
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	792
NspV	TTCGAA	1 cut(s)	544
PciI	ACATGT	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	874
PfeI	GAWTC	2 cut(s)	205, 546
PflMI	CCANNNNNTGG	1 cut(s)	906
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	3 cut(s)	670, 745, 916
PpsI	GAGTC	3 cut(s)	670, 745, 916
PscI	ACATGT	1 cut(s)	788
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	809
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	2 cut(s)	128, 583
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	30, 345, 828
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	69, 128, 583
Sau96I	GGNCC	1 cut(s)	809
SchI	GAGTC	3 cut(s)	671, 745, 916
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	123, 623
SfcI	CTRYAG	3 cut(s)	366, 618, 795
SfuI	TTCGAA	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	108, 216, 447, 684, 824, 869
SsiI	CCGC	3 cut(s)	119, 512, 929
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	270, 367, 607, 799
TaqI	TCGA	7 cut(s)	5, 34, 203, 309, 377, 544, 818
TasI	AATT	6 cut(s)	108, 216, 447, 684, 824, 869
TfiI	GAWTC	2 cut(s)	205, 546
Tru1I	TTAA	3 cut(s)	30, 345, 828
Tru9I	TTAA	3 cut(s)	30, 345, 828
TseFI	GTSAC	3 cut(s)	361, 688, 855
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	3 cut(s)	361, 688, 855
TspDTI	ATGAA	2 cut(s)	409, 752
Van91I	CCANNNNNTGG	1 cut(s)	906
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	2 cut(s)	108, 824
XceI	RCATGY	1 cut(s)	792
XspI	CTAG	1 cut(s)	674
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.