Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

17771684 .. 17775131

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G234100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGATAGAGCTCAAACTTTCACGAATTAATCGCGTCTATCGCCCTTCTGAAGTTGTTGAGGGTAAAATCATAGTGAGGTCTTCTTCTTCAATCTCCCACTATGGAATTCGCCTCGCTGTTAACGGATCTGTCAACTTGCAGGTTCGTGGAGGATCGGCGGGAGTTATCGAGACTTTGGTTGGTGTTGCCAAGCCTATTTCCATTGTGAATAAAATTGTTGAGGTTAGACCTTCTGGAAAGATTGCTTCAGGCACATCAGAGATTCCATTTTCCATGAATATCAAGCAGCCGGGAGAAAAGAAGCTGGAAAGGTTCTATGAGACCTTCCATGGAGCAAATATTAACATTCAGTATTTATTAACTGTAGATATATCGAGAGGATACCTGCATAAATCATTATCTACAACAATGGAGTTCATAGTTGAAAGTGATAAAGCTGATCTTCTTGAGCGACCAGTTTCTCCGGAGATGGTTATCTTTTACCTTACTCAGGATACTCAAAGGCATCCGCTACTTCCTGAACTAAAGTCAGGTGGATTCCGGGTTATTGGGAAAATGTCCACTCAATGTTGTTTATCAGATCCCATTGTTGGTGAACTAACAGTAGAAGCGTCTGCAGTTCCGATTTGTTCGATTGACATGCACTTGCTTCGTGTAGAGTCAATCCTTCTTGGGGAGAAAATAGTAACTGAACAGTCTCTGATTCAGACTACACAGATAGCAGATGGAGATGTCTGCCGTAATATGACTCTACCCATTTATGTTATACTTCCCCGTCTTTTGACTTGTCCTACTGTCTTAGCTGGTCCATTTTCCATAGAATTTAAAGTTGCCATAGTCATAACCTTTCAATCAGATGTAGCGAAAGTGCATTCAAAATCTGATCCTACAACTCCCAGACTATGGCTTGCAATGGAAAGTTTACCGCTTGAACTTGTTCGAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

318

Amino Acids

34.99

Weight (kDa)

8.22

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	133, 396
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccII	CGCG	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	3 cut(s)	161, 512, 929
AclWI	GGATC	4 cut(s)	136, 163, 578, 881
AcsI	RAATTY	2 cut(s)	108, 824
AcuI	CTGAAG	2 cut(s)	72, 234
AfiI	CCNNNNNNNGG	4 cut(s)	493, 593, 676, 906
AgsI	TTSAA	5 cut(s)	93, 428, 854, 879, 935
AluBI	AGCT	4 cut(s)	13, 307, 440, 806
AluI	AGCT	4 cut(s)	13, 307, 440, 806
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	167, 317, 705
AlwI	GGATC	4 cut(s)	136, 163, 578, 881
AlwNI	CAGNNNCTG	1 cut(s)	703
Aor13HI	TCCGGA	1 cut(s)	466
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	2 cut(s)	108, 824
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	2 cut(s)	294, 545
AsuHPI	GGTGA	1 cut(s)	608
AsuII	TTCGAA	1 cut(s)	943
AvaII	GGWCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	466, 722
BceAI	ACGGC	1 cut(s)	726
BcgI	CGANNNNNNTGC	4 cut(s)	625, 635, 659, 669
BciVI	GTATCC	2 cut(s)	377, 490
BcnI	CCSGG	2 cut(s)	294, 545
BcoDI	GTCTC	3 cut(s)	167, 317, 705
BfmI	CTRYAG	2 cut(s)	366, 618
BfuAI	ACCTGC	2 cut(s)	133, 396
BfuI	GTATCC	2 cut(s)	377, 490
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	294, 545
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	809
BmrFI	CCNGG	2 cut(s)	294, 545
BmsI	GCATC	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	943
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	294, 545
BsaBI	GATNNNNATC	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	4 cut(s)	493, 593, 676, 906
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	921
Bse8I	GATNNNNATC	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	493, 593, 676, 906
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	293, 467, 544
BslI	CCNNNNNNNGG	4 cut(s)	493, 593, 676, 906
BsmAI	GTCTC	3 cut(s)	167, 317, 705
BsmI	GAATGC	1 cut(s)	874
Bso31I	GGTCTC	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	943
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	128, 155, 442, 583, 886
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	3 cut(s)	161, 512, 929
BspCNI	CTCAG	1 cut(s)	505
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	2 cut(s)	133, 396
BspPI	GGATC	4 cut(s)	136, 163, 578, 881
BspT104I	TTCGAA	1 cut(s)	943
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	5 cut(s)	128, 155, 442, 583, 886
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	4 cut(s)	367, 607, 699, 799
BstBI	TTCGAA	1 cut(s)	943
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	2 cut(s)	492, 802
BstDSI	CCRYGG	1 cut(s)	331
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	5 cut(s)	131, 158, 445, 586, 889
BstMAI	GTCTC	3 cut(s)	167, 317, 705
BstMBI	GATC	5 cut(s)	128, 155, 442, 583, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	292, 543
BstSFI	CTRYAG	2 cut(s)	366, 618
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	128, 583
BstYI	RGATCY	2 cut(s)	128, 583
BsuI	GTATCC	2 cut(s)	377, 490
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	508
BveI	ACCTGC	2 cut(s)	133, 396
Cac8I	GCNNGC	1 cut(s)	912
CaiI	CAGNNNCTG	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	809
CseI	GACGC	2 cut(s)	25, 603
CviAII	CATG	3 cut(s)	277, 332, 643
CviJI	RGCY	7 cut(s)	13, 196, 292, 307, 440, 806, 910
CviKI_1	RGCY	7 cut(s)	13, 196, 292, 307, 440, 806, 910
DdeI	CTNAG	2 cut(s)	492, 802
DpnI	GATC	5 cut(s)	130, 157, 444, 585, 888
DpnII	GATC	5 cut(s)	128, 155, 442, 583, 886
DraI	TTTAAA	1 cut(s)	829
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	2 cut(s)	72, 234
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	3 cut(s)	280, 335, 646
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	3 cut(s)	276, 331, 642
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	290
HapII	CCGG	3 cut(s)	293, 467, 544
HgaI	GACGC	2 cut(s)	25, 603
Hin1II	CATG	3 cut(s)	280, 335, 646
HincII	GTYRAC	2 cut(s)	124, 136
HindII	GTYRAC	2 cut(s)	124, 136
HinfI	GANTC	5 cut(s)	265, 540, 662, 706, 751
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	3 cut(s)	293, 467, 544
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	5 cut(s)	124, 136, 564, 599, 926
Hpy188I	TCNGA	8 cut(s)	52, 262, 583, 627, 705, 711, 859, 886
Hpy188III	TCNNGA	8 cut(s)	24, 172, 237, 378, 449, 467, 494, 521
Hpy8I	GTNNAC	5 cut(s)	124, 136, 564, 599, 926
HpyAV	CCTTC	4 cut(s)	57, 243, 337, 680
HpyCH4III	ACNGT	4 cut(s)	367, 607, 699, 799
HpyCH4V	TGCA	6 cut(s)	142, 391, 620, 646, 874, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	492, 802
Hsp92II	CATG	3 cut(s)	280, 335, 646
Kpn2I	TCCGGA	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	128, 155, 442, 583, 886
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	5 cut(s)	130, 157, 444, 585, 888
MboI	GATC	5 cut(s)	128, 155, 442, 583, 886
MboII	GAAGA	4 cut(s)	75, 78, 81, 437
MflI	RGATCY	2 cut(s)	128, 583
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	27, 108, 216, 824
MlyI	GAGTC	2 cut(s)	671, 745
MnlI	CCTC	6 cut(s)	55, 72, 125, 146, 217, 374
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	5 cut(s)	30, 123, 345, 362, 828
MspI	CCGG	3 cut(s)	293, 467, 544
MspR9I	CCNGG	2 cut(s)	294, 545
Mva1269I	GAATGC	1 cut(s)	874
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	2 cut(s)	294, 545
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	5 cut(s)	128, 155, 442, 583, 886
NlaIII	CATG	3 cut(s)	280, 335, 646
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	943
PctI	GAATGC	1 cut(s)	874
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	3 cut(s)	265, 540, 706
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	1 cut(s)	291
PleI	GAGTC	2 cut(s)	670, 745
PpsI	GAGTC	2 cut(s)	670, 745
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	809
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	2 cut(s)	128, 583
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	5 cut(s)	30, 123, 345, 362, 828
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	5 cut(s)	128, 155, 442, 583, 886
Sau96I	GGNCC	1 cut(s)	809
SchI	GAGTC	2 cut(s)	671, 745
ScrFI	CCNGG	2 cut(s)	294, 545
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	2 cut(s)	366, 618
SfuI	TTCGAA	1 cut(s)	943
SinI	GGWCC	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	4 cut(s)	27, 108, 216, 824
SsiI	CCGC	3 cut(s)	161, 512, 929
SspI	AATATT	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	292, 543
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	367, 607, 699, 799
TaqI	TCGA	5 cut(s)	5, 171, 377, 635, 943
TasI	AATT	4 cut(s)	27, 108, 216, 824
TfiI	GAWTC	3 cut(s)	265, 540, 706
Tru1I	TTAA	5 cut(s)	30, 123, 345, 362, 828
Tru9I	TTAA	5 cut(s)	30, 123, 345, 362, 828
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	293, 409
TspGWI	ACGGA	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	906
VpaK11BI	GGWCC	1 cut(s)	809
VspI	ATTAAT	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	491
XapI	RAATTY	2 cut(s)	108, 824
XceI	RCATGY	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.