Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

1183747 .. 1185937

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCTAATTAATCTAAGTGAAAGCACAAAGACTAATCCTATCAAACATGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTGCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCTGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTGCCAAGCCTATTTCGATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

65

Amino Acids

6.74

Weight (kDa)

9.3

Isoelectric Point (pI)

17.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	116
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	105
AseI	ATTAAT	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	57
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	66, 125
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	116
BspPI	GGATC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	66, 125
BstDEI	CTNAG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	2 cut(s)	69, 128
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	2 cut(s)	66, 125
BstMCI	CGRYCG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	97
CseI	GACGC	1 cut(s)	72
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	2 cut(s)	146, 181
CviKI_1	RGCY	2 cut(s)	146, 181
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	68, 127
DpnII	GATC	2 cut(s)	66, 125
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
EclXI	CGGCCG	1 cut(s)	144
Eco52I	CGGCCG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	105
FaeI	CATG	1 cut(s)	50
FaiI	YATR	4 cut(s)	48, 71, 102, 155
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	66, 125
LpnPI	CCDG	2 cut(s)	38, 160
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	120
MalI	GATC	2 cut(s)	68, 127
MboI	GATC	2 cut(s)	66, 125
MboII	GAAGA	1 cut(s)	78
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	2 cut(s)	6, 105
MnlI	CCTC	2 cut(s)	52, 131
MseI	TTAA	1 cut(s)	9
MspI	CCGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	116
NdeII	GATC	2 cut(s)	66, 125
NlaIII	CATG	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	175
PshBI	ATTAAT	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	66, 125
SfaNI	GCATC	1 cut(s)	120
SgeI	CNNG	8 cut(s)	59, 65, 76, 106, 127, 146, 159, 190
Sse9I	AATT	2 cut(s)	6, 105
SsiI	CCGC	1 cut(s)	116
TaqI	TCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	6, 105
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	63
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.