Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

37357333 .. 37359415

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG209700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGAATGGGTACCCCAAGTTGTATAAGAAGCCGACGAAATCCCTACCTATGGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTGCGTCTTCAATCTCGCACTATGGAATTCGCATCGTGGTTTATGGATCTGTCAACTTGCAGGTTCGAATTTCACCGTCCGTGTTCGGGGAGGGAAGGCCGGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

63

Amino Acids

6.96

Weight (kDa)

9.82

Isoelectric Point (pI)

24.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	108, 150
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	49, 168
AgsI	TTSAA	1 cut(s)	93
AlwI	GGATC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	108, 150
Asp718I	GGTACC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	147
AsuII	TTCGAA	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	11
BmsI	GCATC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 168
Bse1I	ACTGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	49, 168
BseNI	ACTGG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	49, 168
BsnI	GGCC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	69, 128
BspANI	GGCC	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	11
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	136
BspT104I	TTCGAA	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	69, 128
Bst4CI	ACNGT	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	148
BstKTI	GATC	2 cut(s)	72, 131
BstMBI	GATC	2 cut(s)	69, 128
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	133
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	2 cut(s)	31, 181
CviKI_1	RGCY	2 cut(s)	31, 181
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	2 cut(s)	71, 130
DpnII	GATC	2 cut(s)	69, 128
EcoRI	GAATTC	1 cut(s)	108
FaiI	YATR	6 cut(s)	24, 50, 74, 105, 126, 190
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	69, 128
LpnPI	CCDG	2 cut(s)	41, 128
LweI	GCATC	1 cut(s)	123
MalI	GATC	2 cut(s)	71, 130
MboI	GATC	2 cut(s)	69, 128
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	2 cut(s)	108, 150
MnlI	CCTC	2 cut(s)	55, 166
MspI	CCGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	69, 128
NlaIV	GGNNCC	1 cut(s)	11
NspV	TTCGAA	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
Sau3AI	GATC	2 cut(s)	69, 128
SetI	ASST	2 cut(s)	49, 147
SfaNI	GCATC	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	148
SgeI	CNNG	9 cut(s)	28, 68, 79, 109, 130, 151, 155, 175, 181
Sse9I	AATT	2 cut(s)	108, 150
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	108, 150
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	151
XapI	RAATTY	2 cut(s)	108, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.