Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Reverse (-)

1068125 .. 1068952

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCACTCAATGTTCTTTATCGGATCCCGTTAGTGGTGAACTAACAGTAGAAGCATCTGCAGTTCCAATTTCTTCCATTGATATACACTTGTTTCGTGTAGAGTCAATCCTTCTAGGGGAGAAAATTGTGACTGAGAAGTCTGTGGTTCAGACTACACAGATAGCAGATGGAGACGTCTGTCATAATATGACTCTGCCCATTCATGTTATACTTCCCCGTCTTTTGACATGTCCTACAGTCTCAGCAGGGCCATTCTCGATTGAATTTAAAGCTGTCATAGTCATAACATTTCAGTCAGAGGTAGCGAAATTGCATTCAAAATCTGATCCTACAACTCCCAGACTATGGCTTGCAATGGAGACTCTACCGCTTGAACTTGTTAGAACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

131

Amino Acids

14.28

Weight (kDa)

5.47

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	6 - 96	7.3e-12	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AatII	GACGTC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	348
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	3 cut(s)	20, 33, 323
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	35, 118, 348
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	266, 321, 377
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	168, 247, 356
AlwI	GGATC	3 cut(s)	20, 33, 323
AoxI	GGCC	2 cut(s)	3, 251
ApoI	RAATTY	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	25
BccI	CCATC	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	168, 247, 356
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	60, 237
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	65
BoxI	GACNNNNGTC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 118, 348
Bse3DI	GCAATG	1 cut(s)	363
BseLI	CCNNNNNNNGG	3 cut(s)	35, 118, 348
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	126, 258
BshFI	GGCC	2 cut(s)	5, 253
BslI	CCNNNNNNNGG	3 cut(s)	35, 118, 348
BsmAI	GTCTC	3 cut(s)	168, 247, 356
BsmBI	CGTCTC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	5, 253
Bsp143I	GATC	2 cut(s)	25, 328
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	5, 253
BspCNI	CTCAG	2 cut(s)	127, 257
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	3 cut(s)	20, 33, 323
BsrDI	GCAATG	1 cut(s)	363
BssMI	GATC	2 cut(s)	25, 328
BssNI	GRCGYC	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	49, 241
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	135, 244
BstKTI	GATC	2 cut(s)	28, 331
BstMAI	GTCTC	3 cut(s)	168, 247, 356
BstMBI	GATC	2 cut(s)	25, 328
BstNSI	RCATGY	1 cut(s)	234
BstPAI	GACNNNNGTC	1 cut(s)	180
BstSFI	CTRYAG	2 cut(s)	60, 237
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	5, 253
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	2 cut(s)	206, 231
CviJI	RGCY	4 cut(s)	5, 253, 275, 352
CviKI_1	RGCY	4 cut(s)	5, 253, 275, 352
DdeI	CTNAG	2 cut(s)	135, 244
DpnI	GATC	2 cut(s)	27, 330
DpnII	GATC	2 cut(s)	25, 328
DraI	TTTAAA	1 cut(s)	271
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	3
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	209, 234
FaiI	YATR	9 cut(s)	86, 186, 191, 207, 212, 232, 281, 287, 349
FatI	CATG	2 cut(s)	205, 230
FspBI	CTAG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	5, 253
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	209, 234
HinfI	GANTC	3 cut(s)	104, 193, 364
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	4 cut(s)	25, 153, 301, 328
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	49, 241
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	62, 316, 356
HpyF3I	CTNAG	2 cut(s)	135, 244
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	209, 234
Kzo9I	GATC	2 cut(s)	25, 328
LpnPI	CCDG	2 cut(s)	234, 355
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	27, 330
MboI	GATC	2 cut(s)	25, 328
MboII	GAAGA	1 cut(s)	66
MflI	RGATCY	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	69, 126, 266, 311
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	113, 187, 358
MnlI	CCTC	1 cut(s)	295
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	316
NdeII	GATC	2 cut(s)	25, 328
NlaIII	CATG	2 cut(s)	209, 234
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	234
PciI	ACATGT	1 cut(s)	230
PctI	GAATGC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	348
PleI	GAGTC	3 cut(s)	112, 187, 358
PpsI	GAGTC	3 cut(s)	112, 187, 358
PscI	ACATGT	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	25, 328
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	3 cut(s)	113, 187, 358
SetI	ASST	4 cut(s)	180, 277, 306, 395
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	2 cut(s)	60, 237
Sse9I	AATT	4 cut(s)	69, 126, 266, 311
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	49, 241
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	260
TasI	AATT	4 cut(s)	69, 126, 266, 311
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	234
XspI	CTAG	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.