Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014842.1

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

59405 .. 59962

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014842.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgcatatcaggcaaccaagagaagatagcctcgaaaagttctatgagacattccatggaggaaatattaacattcagtatttagtgactgtagatatatcgagaggatacctgtataagtcgttatctacaacaatggagttcatagttgaaagtgataaagctgatgtaattgagcgaccagtttctccagagatggttgtcttttacattactcaggatacccaaagacatccgctacttcctcaactgaaatcaggtttgctggttacttccagttatatcctatctatctctagttactgttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

103

Amino Acids

11.87

Weight (kDa)

5.49

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	41
BccI	CCATC	1 cut(s)	190
BciVI	GTATCC	2 cut(s)	101, 214
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	2 cut(s)	101, 214
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	182, 276
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	182, 276
BsmAI	GTCTC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	182, 276
BssECI	CCNNGG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	91, 305
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	90
BsuI	GTATCC	2 cut(s)	101, 214
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	232
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	2 cut(s)	30, 164
CviKI_1	RGCY	2 cut(s)	30, 164
DdeI	CTNAG	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	59
FaiI	YATR	7 cut(s)	6, 45, 57, 98, 117, 146, 282
FatI	CATG	1 cut(s)	55
FokI	GGATG	1 cut(s)	219
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	59
Hpy188III	TCNNGA	3 cut(s)	102, 191, 218
HpyCH4III	ACNGT	2 cut(s)	91, 305
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	59
LpnPI	CCDG	7 cut(s)	125, 195, 203, 204, 243, 251, 289
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	85, 268, 299
MboII	GAAGA	1 cut(s)	35
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	4 cut(s)	41, 53, 98, 255
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	69, 310
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	55
NlaIII	CATG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	69, 310
SetI	ASST	3 cut(s)	114, 166, 262
SfcI	CTRYAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	236
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	91, 305
TaqI	TCGA	2 cut(s)	33, 101
TasI	AATT	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	69, 310
Tru9I	TTAA	2 cut(s)	69, 310
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	133
XspI	CTAG	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.