Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002255

Physical Location & Seq

Genomic Coordinates Forward (+)

19290823 .. 19298455

Gene Structure 7633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG111500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCGATTGAGCTCAAGCTTTCCCGGATTAATCGAGTTTATCGTCCTTCTGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTGCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGTTTGATGGATCTGTCAACTTGCAGGTTCGGGGAGGGACGGCCGGAGTTATAGAGACTTTGGTTGGTGCTGCCAAGCCTATTTCGATTCTGACACTATCTGGCGGCACCATCTCCAGAGGTCTGGTGGTGGAAGTAGCTATTGATTCATTAGTCACTCCTGAAGCATCTTACAAGGTAGTGAAGATAGTTTCCAGTGCTGATGCCCCAAGCATTAAGCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps26

Protein Analysis

114

Amino Acids

11.91

Weight (kDa)

9.63

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48550 AT1G48550
fragaria_vesca	FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430 FvH4_5g17430
malus_domestica	MD06G1227700.v1.1
prunus_persica	Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1 Prupe.5G234100_v2.0.a1
pyrus_communis	pycom06g20400
rosa_chinensis	RchiOBHm_Chr5g0035741 RchiOBHm_Chr7g0178261 RchiOBHm_Chr7g0212051 RchiOBHm_Chr7g0224581
rosa_laevigata	RLG00000005458
rosa_multiflora	Rmu_co8410883.1_g000001 Rmu_sc0000607.1_g000038 Rmu_sc0004642.1_g000025 Rmu_sc0014842.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275030 Rroxscaffold_5G00359350
rosa_rugosa	Rorug05G0210300 Rorug06G0415700 Rorug06G0415800
rosa_samantha	Rh1AG111500 Rh3AG217900 Rh5AG337300 Rh5CG416100 Rh5DG280200 Rh6AG209700 Rh7AG014500 Rh7BG014100 Rh7CG014000 Rh7CG014100 Rh7DG014300 Rh7DG014400
rosa_wichuraiana	Rw1G006280 Rw4G000530 Rw7G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	1 cut(s)	119
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	93
AluBI	AGCT	3 cut(s)	13, 19, 257
AluI	AGCT	3 cut(s)	13, 19, 257
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	108
AseI	ATTAAT	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	119, 236
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	2 cut(s)	189, 223
BlsI	GCNGC	2 cut(s)	190, 224
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	3 cut(s)	123, 293, 310
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	60, 312
BseNI	ACTGG	2 cut(s)	60, 312
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	25, 162
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	69, 128
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	60, 312
BssMI	GATC	2 cut(s)	69, 128
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	72, 131
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	69, 128
BstMCI	CGRYCG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	128
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	133
CseI	GACGC	1 cut(s)	75
CviJI	RGCY	5 cut(s)	13, 19, 161, 196, 257
CviKI_1	RGCY	5 cut(s)	13, 19, 161, 196, 257
DpnI	GATC	2 cut(s)	71, 130
DpnII	GATC	2 cut(s)	69, 128
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	15
FaiI	YATR	3 cut(s)	74, 105, 170
FaqI	GGGAC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	189, 223
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	189, 223
GluI	GCNGC	2 cut(s)	189, 223
GsuI	CTGGAG	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	25, 162
HgaI	GACGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	205, 263
HpaII	CCGG	2 cut(s)	25, 162
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	52, 210
Hpy188III	TCNNGA	2 cut(s)	234, 278
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	69, 128
LpnPI	CCDG	9 cut(s)	38, 41, 128, 175, 204, 227, 247, 291, 325
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	3 cut(s)	123, 293, 310
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	71, 130
MboI	GATC	2 cut(s)	69, 128
MboII	GAAGA	2 cut(s)	81, 313
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	3 cut(s)	55, 146, 230
MseI	TTAA	2 cut(s)	30, 333
MspI	CCGG	2 cut(s)	25, 162
MspR9I	CCNGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	119
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	69, 128
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	205, 263
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	190, 224
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	30, 333
SatI	GCNGC	2 cut(s)	189, 223
Sau3AI	GATC	2 cut(s)	69, 128
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	15, 21, 147, 241, 259, 297
SfaNI	GCATC	3 cut(s)	123, 293, 310
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	23
TaqI	TCGA	3 cut(s)	5, 34, 203
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	205, 263
Tru1I	TTAA	2 cut(s)	30, 333
Tru9I	TTAA	2 cut(s)	30, 333
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	319
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.