AT1G49570

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002583
Physical Location & Seq
Forward (+)
18346958 .. 18349049
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49570.1

Sequence Viewer

Length: 1053 bp
ATGGACCACAAAATGTCAATGTATTTGTTTGTGTCTTACCTAGCAATCTTTACTCTTTTCTTCAAAGGCTTTGTCTCCTCGTTTCCTTCGGGATATAACAATGGTTACAACAATGGTCACGGACATGGACTAACTAGCAATCTCAACTATCGATTCTATGACCGGTCTTGTCCGCGTCTTCAAACGATTGTTAAGTCCGGAGTTTGGAGAGCTTTTAAAGATGATTCTCGAATCGCTGCATCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATGGATGTGATGGATCTATACTTCTGAACGATTCAGAGGATTTCAAAGGAGAGAAGAACGCTCAGCCAAACCGAAACTCAGTCCGTGGATTCGAAGTCATTGAAGACATTAAATCTGATATCGAAAGTTCTTGTCCCTTAACAGTTTCATGCGCTGACATAGTTGCTCTCGCGGCTAGAGAAGCTGTCGTCCTCACTGGAGGACCGTTTTGGCCCGTGCCTTTGGGACGAAGGGACTCATTAACGGCGAGTGAGCAAGCGGCGAATACAAATCTGCCATCTCCGTTTGAGGCGTTGGAGAATATAACAGCCAAGTTCGTGACCCTTGGACTCGACCTCAAGGACGTTGTTGTCCTCTCAGGAGCACATACTATAGGATTTGCTCAATGTTTCGTGATCAAGCATAGACTCTTCAACTTCAAGGGCTCAGGCCAGCCTGACCCAAACCTAGCCGCTTCCTCAGCACTTCTCTCTAAGCTAAAGGACACGTGTCCTAACGTGGACTCCTCAGACTCTAAGCTCGCTGCTCTTGACGCAGCTAGCTCAGTCAAGTTTGACAATGCTTACTACGTGAACTTAATGAACAACATAGGACTGTTGGATTCTGATCAAACCCTAATGACAGATCCTACGGCTGCCGCCTTGGTGAAGTCGTACAGCGAGAATCCGTACTTGTTCTCGAGGGATTTCGCAGTTTCAATGGTTAAAATGGGGAATATCGGAGTTATGACCGGAAGTGATGGAGTAATTCGAGGAAAATGTGGATTTCCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

350

Amino Acids

38.03

Weight (kDa)

6.17

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 64 - 314 1.5e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 626
AccII CGCG 2 cut(s) 175, 449
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 5 cut(s) 173, 449, 536, 729, 915
AclWI GGATC 2 cut(s) 298, 896
AcvI CACGTG 1 cut(s) 765
AfaI GTAC 2 cut(s) 932, 947
AfiI CCNNNNNNNGG 1 cut(s) 204
AflIII ACRYGT 2 cut(s) 762, 764
AgeI ACCGGT 1 cut(s) 162
AgsI TTSAA 7 cut(s) 64, 182, 322, 380, 691, 697, 975
AjnI CCWGG 1 cut(s) 1045
AluBI AGCT 6 cut(s) 212, 461, 754, 796, 815, 819
AluI AGCT 6 cut(s) 212, 461, 754, 796, 815, 819
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 298, 896
Ama87I CYCGRG 1 cut(s) 955
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 2 cut(s) 488, 706
ApeKI GCWGC 4 cut(s) 236, 800, 812, 911
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AsiGI ACCGGT 1 cut(s) 162
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 4, 479, 489
AsuHPI GGTGA 1 cut(s) 934
AsuII TTCGAA 1 cut(s) 369
AsuNHI GCTAGC 1 cut(s) 815
AvaI CYCGRG 1 cut(s) 955
AvaII GGWCC 2 cut(s) 4, 479
BanII GRGCYC 1 cut(s) 704
BbrPI CACGTG 1 cut(s) 765
BbsI GAAGAC 2 cut(s) 170, 387
Bbv12I GWGCWC 1 cut(s) 643
BbvCI CCTCAGC 1 cut(s) 736
BbvI GCAGC 4 cut(s) 223, 787, 824, 898
BccI CCATC 3 cut(s) 281, 562, 1010
BceAI ACGGC 2 cut(s) 537, 924
BciT130I CCWGG 1 cut(s) 1047
BclI TGATCA 2 cut(s) 672, 883
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 5 cut(s) 41, 135, 453, 725, 816
BfmI CTRYAG 1 cut(s) 648
BisI GCNGC 8 cut(s) 237, 450, 537, 729, 801, 813, 912, 915
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 8 cut(s) 238, 451, 538, 730, 802, 814, 913, 916
Bme1390I CCNGG 1 cut(s) 1047
Bme18I GGWCC 2 cut(s) 4, 479
BmeT110I CYCGRG 1 cut(s) 955
BmgT120I GGNCC 3 cut(s) 4, 479, 489
BmrFI CCNGG 1 cut(s) 1047
BmsI GCATC 1 cut(s) 248
BmtI GCTAGC 1 cut(s) 819
BoxI GACNNNNGTC 1 cut(s) 765
BpiI GAAGAC 2 cut(s) 170, 387
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 2 cut(s) 703, 736
Bpu1102I GCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 599
Bsa29I ATCGAT 1 cut(s) 151
BsaAI YACGTR 2 cut(s) 765, 847
BsaBI GATNNNNATC 1 cut(s) 882
BsaJI CCNNGG 3 cut(s) 361, 601, 918
BsaWI WCCGGW 3 cut(s) 162, 197, 1007
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 478
Bse8I GATNNNNATC 1 cut(s) 882
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 1 cut(s) 1047
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 361, 601, 918
BseGI GGATG 1 cut(s) 287
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 7 cut(s) 353, 369, 648, 717, 750, 798, 834
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 67, 772
BseXI GCAGC 4 cut(s) 223, 787, 824, 898
Bsh1236I CGCG 2 cut(s) 175, 449
BshFI GGCC 2 cut(s) 490, 708
BshTI ACCGGT 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 955
BsiSI CCGG 3 cut(s) 163, 198, 1008
BslFI GGGAC 3 cut(s) 396, 516, 524
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 3 cut(s) 396, 516, 524
BsnI GGCC 2 cut(s) 490, 708
BsoBI CYCGRG 1 cut(s) 955
Bsp119I TTCGAA 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 643, 704
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 4 cut(s) 290, 672, 883, 901
Bsp1720I GCTNAGC 1 cut(s) 339
BspACI CCGC 5 cut(s) 173, 449, 536, 729, 915
BspANI GGCC 2 cut(s) 490, 708
BspCNI CTCAG 7 cut(s) 352, 368, 647, 716, 749, 797, 833
BspDI ATCGAT 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 197
BspFNI CGCG 2 cut(s) 175, 449
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 2 cut(s) 298, 896
BspT104I TTCGAA 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 361, 601, 918
BssMI GATC 4 cut(s) 290, 672, 883, 901
BssT1I CCWWGG 2 cut(s) 601, 918
Bst2UI CCWGG 1 cut(s) 1047
Bst4CI ACNGT 3 cut(s) 421, 483, 873
Bst6I CTCTTC 2 cut(s) 249, 692
BstBAI YACGTR 2 cut(s) 765, 847
BstBI TTCGAA 1 cut(s) 369
BstC8I GCNNGC 4 cut(s) 534, 710, 798, 817
BstDEI CTNAG 9 cut(s) 339, 355, 634, 703, 736, 750, 784, 792, 820
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 2 cut(s) 175, 449
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 4 cut(s) 293, 675, 886, 904
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 290, 672, 883, 901
BstMWI GCNNNNNNNGC 4 cut(s) 449, 458, 737, 809
BstNI CCWGG 1 cut(s) 1047
BstPAI GACNNNNGTC 1 cut(s) 765
BstSCI CCNGG 1 cut(s) 1045
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 2 cut(s) 175, 449
BstV1I GCAGC 4 cut(s) 223, 787, 824, 898
BstV2I GAAGAC 2 cut(s) 170, 387
BstX2I RGATCY 2 cut(s) 290, 901
BstYI RGATCY 2 cut(s) 290, 901
Bsu15I ATCGAT 1 cut(s) 151
BsuRI GGCC 2 cut(s) 490, 708
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 4 cut(s) 534, 710, 798, 817
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 4, 479, 489
ClaI ATCGAT 1 cut(s) 151
CseI GACGC 2 cut(s) 164, 818
Csp6I GTAC 2 cut(s) 931, 946
CspAI ACCGGT 1 cut(s) 162
CviAII CATG 2 cut(s) 125, 426
CviQI GTAC 2 cut(s) 931, 946
DdeI CTNAG 9 cut(s) 339, 355, 634, 703, 736, 750, 784, 792, 820
DpnI GATC 4 cut(s) 292, 674, 885, 903
DpnII GATC 4 cut(s) 290, 672, 883, 901
DraI TTTAAA 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
Eam1104I CTCTTC 2 cut(s) 249, 692
EarI CTCTTC 2 cut(s) 249, 692
Eco130I CCWWGG 2 cut(s) 601, 918
Eco24I GRGCYC 1 cut(s) 704
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 4, 479
Eco72I CACGTG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 955
EcoRII CCWGG 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 601, 918
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 2 cut(s) 601, 918
FaeI CATG 2 cut(s) 128, 429
FaqI GGGAC 3 cut(s) 396, 516, 524
FatI CATG 2 cut(s) 124, 425
FbaI TGATCA 2 cut(s) 672, 883
Fnu4HI GCNGC 8 cut(s) 237, 450, 537, 729, 801, 813, 912, 915
FokI GGATG 1 cut(s) 294
FriOI GRGCYC 1 cut(s) 704
Fsp4HI GCNGC 8 cut(s) 237, 450, 537, 729, 801, 813, 912, 915
FspBI CTAG 5 cut(s) 41, 135, 453, 725, 816
GlaI GCGC 1 cut(s) 430
GluI GCNGC 8 cut(s) 237, 450, 537, 729, 801, 813, 912, 915
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 2 cut(s) 490, 708
HapII CCGG 3 cut(s) 163, 198, 1008
HgaI GACGC 2 cut(s) 164, 818
HhaI GCGC 1 cut(s) 431
Hin1II CATG 2 cut(s) 128, 429
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HpaII CCGG 3 cut(s) 163, 198, 1008
HphI GGTGA 1 cut(s) 934
Hpy166II GTNNAC 2 cut(s) 778, 850
Hpy188I TCNGA 6 cut(s) 303, 313, 394, 787, 883, 998
Hpy188III TCNNGA 8 cut(s) 90, 198, 228, 595, 636, 670, 806, 955
Hpy8I GTNNAC 2 cut(s) 778, 850
HpyAV CCTTC 2 cut(s) 96, 501
HpyCH4III ACNGT 3 cut(s) 421, 483, 873
HpyCH4IV ACGT 4 cut(s) 621, 764, 774, 846
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 458, 737, 809
HpyF3I CTNAG 9 cut(s) 339, 355, 634, 703, 736, 750, 784, 792, 820
HpySE526I ACGT 4 cut(s) 621, 764, 774, 846
Hsp92II CATG 2 cut(s) 128, 429
HspAI GCGC 1 cut(s) 429
Kpn2I TCCGGA 1 cut(s) 197
Ksp22I TGATCA 2 cut(s) 672, 883
Kzo9I GATC 4 cut(s) 290, 672, 883, 901
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 9 cut(s) 176, 211, 459, 621, 690, 722, 726, 1021, 1032
Lsp1109I GCAGC 4 cut(s) 223, 787, 824, 898
LweI GCATC 1 cut(s) 248
MaeI CTAG 5 cut(s) 41, 135, 453, 725, 816
MaeII ACGT 4 cut(s) 621, 764, 774, 846
MaeIII GTNAC 3 cut(s) 104, 116, 595
MalI GATC 4 cut(s) 292, 674, 885, 903
MboI GATC 4 cut(s) 290, 672, 883, 901
MboII GAAGA 7 cut(s) 52, 170, 236, 239, 343, 392, 679
MflI RGATCY 2 cut(s) 290, 901
MhlI GDGCHC 2 cut(s) 643, 704
MluCI AATT 1 cut(s) 1023
MlyI GAGTC 6 cut(s) 246, 506, 600, 678, 773, 782
MmeI TCCRAC 2 cut(s) 552, 855
MroI TCCGGA 1 cut(s) 197
MseI TTAA 8 cut(s) 192, 216, 387, 416, 518, 854, 981, 1051
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 3 cut(s) 163, 198, 1008
MspR9I CCNGG 1 cut(s) 1047
MvaI CCWGG 1 cut(s) 1047
MvnI CGCG 2 cut(s) 175, 449
MwoI GCNNNNNNNGC 4 cut(s) 449, 458, 737, 809
NdeII GATC 4 cut(s) 290, 672, 883, 901
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 2 cut(s) 128, 429
NmuCI GTSAC 2 cut(s) 116, 595
NspV TTCGAA 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 955
PfeI GAWTC 7 cut(s) 153, 224, 231, 308, 366, 878, 940
PinAI ACCGGT 1 cut(s) 162
PkrI GCNGC 8 cut(s) 238, 451, 538, 730, 802, 814, 913, 916
PleI GAGTC 6 cut(s) 246, 506, 600, 678, 773, 782
PmaCI CACGTG 1 cut(s) 765
PmlI CACGTG 1 cut(s) 765
PpsI GAGTC 6 cut(s) 246, 506, 600, 678, 773, 782
Ppu21I YACGTR 2 cut(s) 765, 847
PshAI GACNNNNGTC 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 1045
PspCI CACGTG 1 cut(s) 765
PspGI CCWGG 1 cut(s) 1045
PspPI GGNCC 3 cut(s) 4, 479, 489
PsuI RGATCY 2 cut(s) 290, 901
RsaI GTAC 2 cut(s) 932, 947
RsaNI GTAC 2 cut(s) 931, 946
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 8 cut(s) 192, 216, 387, 416, 518, 854, 981, 1051
SatI GCNGC 8 cut(s) 237, 450, 537, 729, 801, 813, 912, 915
Sau3AI GATC 4 cut(s) 290, 672, 883, 901
Sau96I GGNCC 3 cut(s) 4, 479, 489
SchI GAGTC 6 cut(s) 246, 506, 600, 678, 773, 782
ScrFI CCNGG 1 cut(s) 1047
SduI GDGCHC 2 cut(s) 643, 704
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 1 cut(s) 648
Sfr274I CTCGAG 1 cut(s) 955
SfuI TTCGAA 1 cut(s) 369
SinI GGWCC 2 cut(s) 4, 479
SlaI CTCGAG 1 cut(s) 955
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 614, 955
SmoI CTYRAG 2 cut(s) 614, 955
Sse9I AATT 1 cut(s) 1023
SsiI CCGC 5 cut(s) 173, 449, 536, 729, 915
SspMI CTAG 5 cut(s) 41, 135, 453, 725, 816
StyD4I CCNGG 1 cut(s) 1045
StyI CCWWGG 2 cut(s) 601, 918
TaaI ACNGT 3 cut(s) 421, 483, 873
TaiI ACGT 4 cut(s) 624, 767, 777, 849
TaqI TCGA 8 cut(s) 151, 229, 250, 369, 399, 609, 956, 1027
TasI AATT 1 cut(s) 1023
TauI GCSGC 4 cut(s) 452, 539, 731, 917
TfiI GAWTC 7 cut(s) 153, 224, 231, 308, 366, 878, 940
Tru1I TTAA 8 cut(s) 192, 216, 387, 416, 518, 854, 981, 1051
Tru9I TTAA 8 cut(s) 192, 216, 387, 416, 518, 854, 981, 1051
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 2 cut(s) 116, 595
TseI GCWGC 4 cut(s) 236, 800, 812, 911
Tsp45I GTSAC 2 cut(s) 116, 595
TspDTI ATGAA 2 cut(s) 414, 872
TspGWI ACGGA 4 cut(s) 135, 350, 549, 933
TspRI CASTG 1 cut(s) 478
VpaK11BI GGWCC 2 cut(s) 4, 479
XhoI CTCGAG 1 cut(s) 955
XspI CTAG 5 cut(s) 41, 135, 453, 725, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.