Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002583

Physical Location & Seq

Genomic Coordinates Reverse (-)

76924692 .. 76934504

Gene Structure 9813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGTACATTACCCACAAACTTTTCTATGTTGTCTTGCTTTGCCTCTTTTTCCTAAGCCCTCCTTTTGTTTCCTCTCAGCTCAATTATAAGTTCTATGATTCCTCTTGTCCCAACTTGAGCAAGATTGTTCAACAAGGCGGATGTGACGCGTCTACACTTCTTGACGATACTAGCACTCTTAAGGGGGAGAAAAATGCTTTGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATCAAGTTAGCGCTGGAGGAAGCTTGCCCATGCACTAGCGGAGGGCCATATTGGCCTGTAGCACTGGGTCGCCGAGATGGCACAACAGCAAGTGAAGATCCACCTAATGACGACTTGCCATCACCTTTTGAGCCCTTGGAAAACATCGCTGAAAAGTTTGCAGCAAAAGGCCTTAATTTAAGGGATGTTGTTGTCCTCTCAGGTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGGTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCAAGCTGATTCTGATACCAAATTGGCTCCACTTGATCCTGTCACTTCCAACAGACTGGCGAACAAATCTGGGCTTCTACAGTCAGACCAGGTCCTTATGGGGGACAGTACAACTGCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAATATTGGTGTGCTTACTGGACAAAATGGACAAATTAGGAAGAATTGTAGGCACCGTCGGGTGCGGTCGTCGGGGGTGTTCCTTGACCTGACTTCTTTCAAGAGATTGTGGACGAGGAGAGCACCAACCTCGTCGTGGGATTCTTTGTGCCTCGTGGCGAGGACTTTTGCTGAGCTTCTTGAAAATCACAATCGATACTTGATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

36.1

Weight (kDa)

8.31

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 92	1.3e-08	Peroxidase
peroxidase	PF00141	95 - 239	1.3e-34	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49570
fragaria_vesca	FvH4_1g15550 FvH4_1g15551 FvH4_1g15551 FvH4_2g06860
malus_domestica	MD02G1167700.v1.1 MD05G1075100.v1.1 MD15G1279900.v1.1
prunus_persica	Prupe.7G137500_v2.0.a1 Prupe.8G116400_v2.0.a1
pyrus_communis	pycom05g06820
rosa_chinensis	RchiOBHm_Chr2g0104851 RchiOBHm_Chr2g0104861 RchiOBHm_Chr6g0259161
rosa_laevigata	RLG00000014552 RLG00000017363 RLG00000017364
rosa_multiflora	Rmu_co8495059.1_g000001 Rmu_sc0003419.1_g000019 Rmu_sc0003419.1_g000021 Rmu_sc0004862.1_g000021
rosa_roxburghii	Rroxscaffold_2G00138710 Rroxscaffold_2G00138720 Rroxscaffold_7G00206470
rosa_rugosa	Rorug02G0123500 Rorug05G0585300
rosa_samantha	Rh2AG173600 Rh2AG173800 Rh2BG181200 Rh2BG181400 Rh2CG178600 Rh2CG178700 Rh2DG179800 Rh2DG180000 Rh6AG102300 Rh6CG091700 Rh6DG085700
rosa_wichuraiana	Rw2G013660 Rw2G013670 Rw6G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	822
AccI	GTMKAC	1 cut(s)	155
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	141, 285, 835
AclWI	GGATC	2 cut(s)	338, 608
AfaI	GTAC	2 cut(s)	8, 688
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	679, 906
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	2 cut(s)	150, 567
AgsI	TTSAA	7 cut(s)	134, 487, 502, 699, 736, 871, 953
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	5 cut(s)	82, 269, 584, 711, 946
AluI	AGCT	5 cut(s)	82, 269, 584, 711, 946
Alw21I	GWGCWC	2 cut(s)	454, 895
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	338, 608
Ama87I	CYCGRG	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	3 cut(s)	290, 299, 415
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	290, 670
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	360, 772
AvaI	CYCGRG	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	670
BaeGI	GKGCMC	2 cut(s)	454, 575
BanI	GGYRCC	1 cut(s)	822
BanII	GRGCYC	1 cut(s)	381
BarI	GAAGNNNNNNTAC	2 cut(s)	679, 711
BauI	CACGAG	1 cut(s)	923
Bbv12I	GWGCWC	2 cut(s)	454, 895
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	317, 373, 760
BcgI	CGANNNNNNTGC	2 cut(s)	882, 916
BciT130I	CCWGG	1 cut(s)	668
BcnI	CCSGG	1 cut(s)	530
BfaI	CTAG	2 cut(s)	174, 282
BfmI	CTRYAG	3 cut(s)	303, 656, 712
BfoI	RGCGCY	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	182
BglI	GCCNNNNNGGC	2 cut(s)	298, 324
BisI	GCNGC	1 cut(s)	408
BlpI	GCTNAGC	1 cut(s)	942
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	2 cut(s)	530, 668
Bme18I	GGWCC	1 cut(s)	670
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	290, 670
BmiI	GGNNCC	2 cut(s)	606, 824
BmrFI	CCNGG	2 cut(s)	530, 668
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	761
BmuI	ACTGGG	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	530
Bsa29I	ATCGAT	1 cut(s)	964
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	679, 906
Bse1I	ACTGG	3 cut(s)	315, 639, 793
BseBI	CCWGG	1 cut(s)	668
BseCI	ATCGAT	1 cut(s)	964
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	149, 436
BseLI	CCNNNNNNNGG	2 cut(s)	679, 906
BseMII	CTCAG	4 cut(s)	92, 459, 485, 933
BseNI	ACTGG	3 cut(s)	315, 639, 793
BseRI	GAGGAG	1 cut(s)	901
BseSI	GKGCMC	2 cut(s)	454, 575
BseXI	GCAGC	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	839
BshFI	GGCC	3 cut(s)	292, 301, 417
BshNI	GGYRCC	1 cut(s)	822
BshVI	ATCGAT	1 cut(s)	964
BsiEI	CGRYCG	1 cut(s)	839
BsiHKAI	GWGCWC	2 cut(s)	454, 895
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	2 cut(s)	96, 695
BslI	CCNNNNNNNGG	2 cut(s)	679, 906
BsmFI	GGGAC	2 cut(s)	96, 695
BsnI	GGCC	3 cut(s)	292, 301, 417
BsoBI	CYCGRG	1 cut(s)	514
Bsp1286I	GDGCHC	4 cut(s)	381, 454, 575, 895
Bsp143I	GATC	2 cut(s)	343, 613
Bsp1720I	GCTNAGC	1 cut(s)	942
BspACI	CCGC	3 cut(s)	141, 285, 835
BspANI	GGCC	3 cut(s)	292, 301, 417
BspCNI	CTCAG	4 cut(s)	91, 458, 484, 934
BspDI	ATCGAT	1 cut(s)	964
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	606, 824
BspPI	GGATC	2 cut(s)	338, 608
BspT107I	GGYRCC	1 cut(s)	822
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	315, 639, 793
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	343, 613
BssSI	CACGAG	1 cut(s)	923
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	4 cut(s)	498, 660, 686, 827
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	271, 521
BstDEI	CTNAG	5 cut(s)	56, 78, 445, 471, 942
BstF5I	GGATG	2 cut(s)	149, 436
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	346, 616
BstMBI	GATC	2 cut(s)	343, 613
BstMCI	CGRYCG	1 cut(s)	839
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 324
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	528, 666
BstSFI	CTRYAG	3 cut(s)	303, 656, 712
BstSLI	GKGCMC	2 cut(s)	454, 575
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	964
BsuRI	GGCC	3 cut(s)	292, 301, 417
BsuTUI	ATCGAT	1 cut(s)	964
BtgZI	GCGATG	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	149, 436
BtsIMutI	CAGTG	2 cut(s)	308, 479
Cac8I	GCNNGC	2 cut(s)	271, 521
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	290, 670
ClaI	ATCGAT	1 cut(s)	964
CseI	GACGC	2 cut(s)	141, 158
CsiI	ACCWGGT	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	7, 687
CviAII	CATG	1 cut(s)	276
CviQI	GTAC	2 cut(s)	7, 687
DdeI	CTNAG	5 cut(s)	56, 78, 445, 471, 942
DpnI	GATC	2 cut(s)	345, 615
DpnII	GATC	2 cut(s)	343, 613
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	670
Eco47III	AGCGCT	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	279
FaiI	YATR	9 cut(s)	30, 90, 99, 231, 277, 295, 461, 677, 714
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	2 cut(s)	96, 695
FatI	CATG	1 cut(s)	275
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	2 cut(s)	156, 443
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	174, 282
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	292, 301, 417
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	2 cut(s)	141, 158
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	5 cut(s)	101, 215, 512, 587, 911
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	2 cut(s)	360, 772
Hpy166II	GTNNAC	3 cut(s)	156, 452, 882
Hpy188I	TCNGA	3 cut(s)	224, 592, 664
Hpy188III	TCNNGA	4 cut(s)	164, 487, 871, 950
Hpy8I	GTNNAC	3 cut(s)	156, 452, 882
Hpy99I	CGWCG	3 cut(s)	831, 844, 907
HpyCH4III	ACNGT	4 cut(s)	498, 660, 686, 827
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	3 cut(s)	279, 407, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 324
HpyF3I	CTNAG	5 cut(s)	56, 78, 445, 471, 942
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	343, 613
LmnI	GCTCC	2 cut(s)	610, 749
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	761
MabI	ACCWGGT	1 cut(s)	666
MaeI	CTAG	2 cut(s)	174, 282
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	3 cut(s)	146, 509, 619
MalI	GATC	2 cut(s)	345, 615
MboI	GATC	2 cut(s)	343, 613
MboII	GAAGA	3 cut(s)	353, 775, 823
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	4 cut(s)	381, 454, 575, 895
MluCI	AATT	5 cut(s)	85, 421, 599, 804, 814
MluI	ACGCGT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	651
MseI	TTAA	3 cut(s)	183, 420, 425
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	530, 668
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	298, 324
NciI	CCSGG	1 cut(s)	530
NdeII	GATC	2 cut(s)	343, 613
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	2 cut(s)	606, 824
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	3 cut(s)	146, 509, 619
PceI	AGGCCT	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	101, 215, 587, 911
PflFI	GACNNNGTC	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	670
PsiI	TTATAA	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	2 cut(s)	606, 824
PspPI	GGNCC	2 cut(s)	290, 670
PspPPI	RGGWCCY	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	668
RsaI	GTAC	2 cut(s)	8, 688
RsaNI	GTAC	2 cut(s)	7, 687
SaqAI	TTAA	3 cut(s)	183, 420, 425
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	343, 613
Sau96I	GGNCC	2 cut(s)	290, 670
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	530, 668
SduI	GDGCHC	4 cut(s)	381, 454, 575, 895
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	3 cut(s)	303, 656, 712
SfiI	GGCCNNNNNGGCC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	670
SmlI	CTYRAG	2 cut(s)	118, 182
SmoI	CTYRAG	2 cut(s)	118, 182
Sse9I	AATT	5 cut(s)	85, 421, 599, 804, 814
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	3 cut(s)	141, 285, 835
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	2 cut(s)	174, 282
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	528, 666
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	4 cut(s)	498, 660, 686, 827
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	1 cut(s)	964
TasI	AATT	5 cut(s)	85, 421, 599, 804, 814
TatI	WGTACW	2 cut(s)	6, 686
TfiI	GAWTC	4 cut(s)	101, 215, 587, 911
Tru1I	TTAA	3 cut(s)	183, 420, 425
Tru9I	TTAA	3 cut(s)	183, 420, 425
TscAI	CASTG	2 cut(s)	315, 479
TseFI	GTSAC	3 cut(s)	146, 509, 619
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	3 cut(s)	146, 509, 619
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	315, 479
Tth111I	GACNNNGTC	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	903
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	2 cut(s)	174, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.