FvH4_2g06860

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002583
Physical Location & Seq
Reverse (-)
5660756 .. 5663011
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06860.t1

Sequence Viewer

Length: 999 bp
ATGGTCTCCTACCTCACCTTTCCTTTCTGCTTATTCTTGTTTTTGTCTCCCTATGTTCATGGCCAGATGTATCCCTTTCCTTATGGCCAGCAGCTTGATTACAATTTTTACGACAGAACCTGCCCCCGCTTGCCTATGATTGTTAAGTACAATGTCTGGGCTGCTGTAAAGAACGACACCAGGATGGCTGCATCTCTTCTTCGGATGCACTTTCACGACTGTATTGTTGATGGATGTGAAGGCTCAGTGCTTCTTGATGACACAGAAGACTTCAGGGGCGAGAAGAATGCTCCACCAAATCGTAACTCACTTCGAGGGTTTGAAGTCATCGACAACATTAAAATAGACTTGGAAAGATTTTGCCCATCAACTGTTTCTTGTGCTGATATTTTGACTCTTGCAGCAAGAGAAGCAGTTGTTCTGGCAGGAGGGCCTTATTGGAATGTTCCATTGGGCCGCAGAGACGGAACAACTGCCAGTGAGAAGTCGGCTAATGAACAAATACCATCACCTATTGAGTCTTTACAGAAAATCACTGCCAAGTTCACATCAAAGGGTCTTGACATCAAAGATGTTGTAGTCCTCTCAGGCGGACACACCATAGGTTTTGCTCAGTGCTTCACCTTCAAGAGGAGACTCTTTAACTTTGACGGCTCCGGCAACCCTGACCCAACACTTGATTCTTCAGTCCTTACAAACTTGCAAAGCATGTGTCCAAACAAAGATACTGCAAACAGCAATCTAGCTCCTCTTGATTCCAGTACTTACAAGTTTGACAATGTCTATTACACAAGCCTTGTTAACAATGCAGGTCTTCTAGAATCTGATCAGGCATTAGTGAAGGATCCAAACACTGCTGCAATGGTTAATTCCTATAGTGGGAATCCATTTCTTTTCTCTCAGGATTTTGCTGCATCGATGGTGAAGCTTGGTAATGTGGGAGTATTGACTGGGCAAAAAGGCCACATAAGGAAGAGATGTGGATCTGTGAACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

36.71

Weight (kDa)

6.22

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 294 1.1e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 128, 800
AciI CCGC 3 cut(s) 127, 457, 591
AclWI GGATC 3 cut(s) 839, 852, 991
AcoI YGGCCR 2 cut(s) 61, 85
AcuI CTGAAG 2 cut(s) 256, 669
AfaI GTAC 2 cut(s) 149, 763
AfiI CCNNNNNNNGG 2 cut(s) 630, 879
AgsI TTSAA 2 cut(s) 323, 628
AjnI CCWGG 1 cut(s) 179
AjuI GAANNNNNNNTTGG 4 cut(s) 434, 466, 664, 696
AluBI AGCT 3 cut(s) 94, 746, 928
AluI AGCT 3 cut(s) 94, 746, 928
Alw26I GTCTC 4 cut(s) 10, 51, 456, 628
AlwI GGATC 3 cut(s) 839, 852, 991
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 5 cut(s) 61, 85, 431, 454, 961
ApeKI GCWGC 6 cut(s) 91, 161, 188, 401, 857, 911
ArsI GACNNNNNNTTYG 2 cut(s) 697, 729
AspS9I GGNCC 2 cut(s) 431, 454
AsuHPI GGTGA 4 cut(s) 7, 501, 613, 934
BalI TGGCCA 2 cut(s) 63, 87
BamHI GGATCC 1 cut(s) 844
BbsI GAAGAC 2 cut(s) 273, 806
BbvI GCAGC 6 cut(s) 103, 148, 175, 413, 844, 898
BccI CCATC 5 cut(s) 178, 224, 373, 514, 913
BceAI ACGGC 1 cut(s) 667
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 4 cut(s) 10, 51, 456, 628
BfaI CTAG 2 cut(s) 743, 818
BfmI CTRYAG 1 cut(s) 874
BfuAI ACCTGC 2 cut(s) 128, 800
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 7 cut(s) 92, 162, 189, 402, 457, 858, 912
BlsI GCNGC 7 cut(s) 93, 163, 190, 403, 458, 859, 913
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 431, 454
BmiI GGNNCC 2 cut(s) 655, 846
BmrFI CCNGG 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 3 cut(s) 195, 200, 923
BmuI ACTGGG 1 cut(s) 960
BpiI GAAGAC 2 cut(s) 273, 806
Bsa29I ATCGAT 1 cut(s) 917
BsaBI GATNNNNATC 1 cut(s) 982
BsaI GGTCTC 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 879
Bse1I ACTGG 3 cut(s) 477, 759, 955
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 1 cut(s) 982
BseBI CCWGG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 917
BseGI GGATG 3 cut(s) 189, 210, 239
BseJI GATNNNNATC 1 cut(s) 982
BseLI CCNNNNNNNGG 2 cut(s) 630, 879
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 4 cut(s) 258, 600, 626, 914
BseNI ACTGG 3 cut(s) 477, 759, 955
BseRI GAGGAG 2 cut(s) 646, 738
BseXI GCAGC 6 cut(s) 103, 148, 175, 413, 844, 898
BshFI GGCC 5 cut(s) 63, 87, 433, 456, 963
BshVI ATCGAT 1 cut(s) 917
BsiSI CCGG 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 630, 879
BsmAI GTCTC 4 cut(s) 10, 51, 456, 628
BsmBI CGTCTC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 5 cut(s) 63, 87, 433, 456, 963
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 826, 844, 983
BspACI CCGC 3 cut(s) 127, 457, 591
BspANI GGCC 5 cut(s) 63, 87, 433, 456, 963
BspCNI CTCAG 4 cut(s) 257, 599, 625, 913
BspDI ATCGAT 1 cut(s) 917
BspLI GGNNCC 2 cut(s) 655, 846
BspMI ACCTGC 2 cut(s) 128, 800
BspPI GGATC 3 cut(s) 839, 852, 991
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 867
BsrI ACTGG 3 cut(s) 477, 759, 955
BssMI GATC 3 cut(s) 826, 844, 983
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 221, 373
Bst6I CTCTTC 2 cut(s) 201, 968
BstC8I GCNNGC 2 cut(s) 89, 131
BstDEI CTNAG 4 cut(s) 244, 586, 612, 900
BstENI CCTNNNNNAGG 1 cut(s) 628
BstF5I GGATG 3 cut(s) 189, 210, 239
BstKTI GATC 3 cut(s) 829, 847, 986
BstMAI GTCTC 4 cut(s) 10, 51, 456, 628
BstMBI GATC 3 cut(s) 826, 844, 983
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 874
BstV1I GCAGC 6 cut(s) 103, 148, 175, 413, 844, 898
BstV2I GAAGAC 2 cut(s) 273, 806
BstX2I RGATCY 2 cut(s) 844, 983
BstYI RGATCY 2 cut(s) 844, 983
Bsu15I ATCGAT 1 cut(s) 917
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 5 cut(s) 63, 87, 433, 456, 963
BsuTUI ATCGAT 1 cut(s) 917
BtsCI GGATG 3 cut(s) 189, 210, 239
BtsI GCAGTG 2 cut(s) 534, 852
BtsIMutI CAGTG 5 cut(s) 252, 484, 534, 620, 852
BveI ACCTGC 2 cut(s) 128, 800
Cac8I GCNNGC 2 cut(s) 89, 131
CaiI CAGNNNCTG 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 431, 454
ClaI ATCGAT 1 cut(s) 917
Csp6I GTAC 2 cut(s) 148, 762
CviAII CATG 2 cut(s) 59, 709
CviQI GTAC 2 cut(s) 148, 762
DdeI CTNAG 4 cut(s) 244, 586, 612, 900
DpnI GATC 3 cut(s) 828, 846, 985
DpnII GATC 3 cut(s) 826, 844, 983
EaeI YGGCCR 2 cut(s) 61, 85
Eam1104I CTCTTC 2 cut(s) 201, 968
EarI CTCTTC 2 cut(s) 201, 968
EciI GGCGGA 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 256, 669
EcoNI CCTNNNNNAGG 1 cut(s) 628
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 2 cut(s) 62, 712
FaiI YATR 8 cut(s) 54, 60, 84, 137, 602, 710, 876, 968
FatI CATG 2 cut(s) 58, 708
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 7 cut(s) 92, 162, 189, 402, 457, 858, 912
FokI GGATG 3 cut(s) 196, 217, 246
Fsp4HI GCNGC 7 cut(s) 92, 162, 189, 402, 457, 858, 912
FspBI CTAG 2 cut(s) 743, 818
GluI GCNGC 7 cut(s) 92, 162, 189, 402, 457, 858, 912
HaeIII GGCC 5 cut(s) 63, 87, 433, 456, 963
HapII CCGG 1 cut(s) 657
Hin1II CATG 2 cut(s) 62, 712
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 7 cut(s) 394, 518, 636, 680, 755, 821, 883
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 1 cut(s) 657
HphI GGTGA 4 cut(s) 7, 501, 613, 934
Hpy166II GTNNAC 3 cut(s) 546, 802, 991
Hpy188I TCNGA 2 cut(s) 204, 826
Hpy188III TCNNGA 7 cut(s) 215, 254, 560, 628, 752, 818, 902
Hpy8I GTNNAC 3 cut(s) 546, 802, 991
HpyAV CCTTC 3 cut(s) 233, 634, 835
HpyCH4III ACNGT 2 cut(s) 221, 373
HpyCH4V TGCA 8 cut(s) 191, 208, 401, 703, 731, 809, 860, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 4 cut(s) 244, 586, 612, 900
Hsp92II CATG 2 cut(s) 62, 712
Ksp22I TGATCA 1 cut(s) 826
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 3 cut(s) 826, 844, 983
LmnI GCTCC 3 cut(s) 295, 659, 751
Lsp1109I GCAGC 6 cut(s) 103, 148, 175, 413, 844, 898
LweI GCATC 3 cut(s) 195, 200, 923
MaeI CTAG 2 cut(s) 743, 818
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 828, 846, 985
MboI GATC 3 cut(s) 826, 844, 983
MboII GAAGA 7 cut(s) 188, 191, 278, 295, 675, 806, 985
MflI RGATCY 2 cut(s) 844, 983
MlsI TGGCCA 2 cut(s) 63, 87
MluCI AATT 2 cut(s) 103, 868
MluNI TGGCCA 2 cut(s) 63, 87
MlyI GAGTC 3 cut(s) 388, 527, 630
MnlI CCTC 6 cut(s) 23, 308, 422, 593, 624, 759
Mox20I TGGCCA 2 cut(s) 63, 87
MscI TGGCCA 2 cut(s) 63, 87
MseI TTAA 5 cut(s) 144, 339, 642, 801, 867
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 2 cut(s) 63, 87
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeII GATC 3 cut(s) 826, 844, 983
NlaIII CATG 2 cut(s) 62, 712
NlaIV GGNNCC 2 cut(s) 655, 846
NspI RCATGY 1 cut(s) 712
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 4 cut(s) 680, 755, 821, 883
PflFI GACNNNGTC 1 cut(s) 779
PkrI GCNGC 7 cut(s) 93, 163, 190, 403, 458, 859, 913
PleI GAGTC 3 cut(s) 388, 526, 630
PpsI GAGTC 3 cut(s) 388, 526, 630
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 655, 846
PspPI GGNCC 2 cut(s) 431, 454
PstNI CAGNNNCTG 1 cut(s) 120
PsuI RGATCY 2 cut(s) 844, 983
PsyI GACNNNGTC 1 cut(s) 779
RsaI GTAC 2 cut(s) 149, 763
RsaNI GTAC 2 cut(s) 148, 762
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 5 cut(s) 144, 339, 642, 801, 867
SatI GCNGC 7 cut(s) 92, 162, 189, 402, 457, 858, 912
Sau3AI GATC 3 cut(s) 826, 844, 983
Sau96I GGNCC 2 cut(s) 431, 454
ScaI AGTACT 1 cut(s) 763
SchI GAGTC 3 cut(s) 388, 527, 630
ScrFI CCNGG 1 cut(s) 181
SfaNI GCATC 3 cut(s) 195, 200, 923
SfcI CTRYAG 1 cut(s) 874
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 2 cut(s) 103, 868
SsiI CCGC 3 cut(s) 127, 457, 591
SspMI CTAG 2 cut(s) 743, 818
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 221, 373
TaqI TCGA 3 cut(s) 313, 330, 917
TasI AATT 2 cut(s) 103, 868
TatI WGTACW 2 cut(s) 147, 761
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 4 cut(s) 680, 755, 821, 883
Tru1I TTAA 5 cut(s) 144, 339, 642, 801, 867
Tru9I TTAA 5 cut(s) 144, 339, 642, 801, 867
TscAI CASTG 5 cut(s) 252, 484, 541, 620, 859
TseI GCWGC 6 cut(s) 91, 161, 188, 401, 857, 911
TspDTI ATGAA 2 cut(s) 47, 510
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 5 cut(s) 252, 484, 541, 620, 859
Tth111I GACNNNGTC 1 cut(s) 779
XagI CCTNNNNNAGG 1 cut(s) 628
XbaI TCTAGA 1 cut(s) 817
XceI RCATGY 1 cut(s) 712
XspI CTAG 2 cut(s) 743, 818
ZrmI AGTACT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.