Rroxscaffold_7G00206470

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002583
Physical Location & Seq
Reverse (-)
56284239 .. 56286500
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206470.1

Sequence Viewer

Length: 1005 bp
ATGATCTCCTACTTCACTCTTGCATTCTGTTTATTCTTGTTTTTGTCTCCCTCTGTTCATAGCGAGAGGTATCCCTTTCCTTATGGCCAGCAGCTTGATTACACTTTCTACGACAGAACCTGCTCCCACTTGCCGATGATTGTTAAGTACAATGTCTGGGCCGCTCTCAAGAATGACACCAGGATGGCTGCATCTCTTCTTCGGATGCATTTTCACGACTGTATTGTTGATGTGCGTGGATGTGAAGGCTCAGTGCTTCTTGATGACACACAAGACTTCAGGGGCGAGAAGAATGCTCCACCAAATCGCAATTCACTTCGAGGGTTTGAAGTCATCGACAACATTAAAACAGACTTAGAGAGATTTTGCCCATCAACTGTTTCTTGTGCTGATATTTTGACTCTTGCAGCAAGAGAAGCAGTTGTTCTGTCAGGAGGGCCTAATTGGAATGTTCCATTGGGCCGAAGAGACGGGACAACTGCGAGTGAGAAGGCAGCTATTGATCAAATACCATCACCTATTGAGTCTTTACAGAAAATCACTGCCAAGTTCACATCAAAGGGTCTTGACATCAAAGATGTCGTAGTCCTCTCAGGTGGACACACCTTAGGTTTTGCTCAGTGCTTCACCTTCAAGAGGAGACTCTTCAACTTTGACGGCTCCGGCAAGCCTGACCCTACGCTTGATTCTTCAGTCCTTGCAAACTTGCAAAGCATGTGTCCAAATAAAGATGCTGCAAACAGCAATCTAGCTCCTCTTGATTCCAGTGCTGACAGATTTGACAATGCATATTACACAAACCTTGTTTACAACGCTGGTCTTTTAGAATCTGATCAGGCATTAGTGAAGGATCCAAACACTGCTGCAATGGTTAATTCCTATAGCGGGAACCCATATCTTTTCTCTCAGGATTTTGCTGCATCTATGGTGAAGCTTGGTAATGTGGGAGTATTGACCGGGCAAAAAGGCCAGATAAGGAAGAGATGTGGATCTGTGAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

334

Amino Acids

36.71

Weight (kDa)

6.52

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 296 4.4e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 2 cut(s) 162, 885
AclWI GGATC 3 cut(s) 845, 858, 997
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 2 cut(s) 262, 675
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 636, 885
AgsI TTSAA 3 cut(s) 329, 634, 649
AjnI CCWGG 1 cut(s) 179
AjuI GAANNNNNNNTTGG 4 cut(s) 295, 327, 440, 472
AluBI AGCT 4 cut(s) 94, 497, 752, 934
AluI AGCT 4 cut(s) 94, 497, 752, 934
Alw26I GTCTC 3 cut(s) 51, 462, 634
AlwI GGATC 3 cut(s) 845, 858, 997
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 5 cut(s) 85, 159, 437, 460, 967
ApeKI GCWGC 7 cut(s) 91, 188, 407, 494, 734, 863, 917
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AspS9I GGNCC 3 cut(s) 159, 437, 460
AsuC2I CCSGG 1 cut(s) 958
AsuHPI GGTGA 3 cut(s) 507, 619, 940
AxyI CCTNAGG 1 cut(s) 607
BalI TGGCCA 1 cut(s) 87
BamHI GGATCC 1 cut(s) 850
BbvI GCAGC 7 cut(s) 103, 175, 419, 506, 721, 850, 904
BccI CCATC 3 cut(s) 178, 379, 520
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 2 cut(s) 502, 832
BcnI CCSGG 1 cut(s) 958
BcoDI GTCTC 3 cut(s) 51, 462, 634
BfaI CTAG 1 cut(s) 749
BfmI CTRYAG 1 cut(s) 880
BfuAI ACCTGC 1 cut(s) 128
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 8 cut(s) 92, 162, 189, 408, 495, 735, 864, 918
BlsI GCNGC 8 cut(s) 93, 163, 190, 409, 496, 736, 865, 919
Bme1390I CCNGG 2 cut(s) 181, 958
BmgT120I GGNCC 3 cut(s) 159, 437, 460
BmiI GGNNCC 3 cut(s) 661, 852, 890
BmrFI CCNGG 2 cut(s) 181, 958
BmsI GCATC 4 cut(s) 195, 200, 721, 929
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 958
BsaBI GATNNNNATC 1 cut(s) 988
Bsc4I CCNNNNNNNGG 2 cut(s) 636, 885
Bse1I ACTGG 1 cut(s) 765
Bse21I CCTNAGG 1 cut(s) 607
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 988
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 3 cut(s) 189, 210, 245
BseJI GATNNNNATC 1 cut(s) 988
BseLI CCNNNNNNNGG 2 cut(s) 636, 885
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 4 cut(s) 264, 606, 632, 920
BseNI ACTGG 1 cut(s) 765
BseRI GAGGAG 2 cut(s) 652, 744
BseXI GCAGC 7 cut(s) 103, 175, 419, 506, 721, 850, 904
BshFI GGCC 5 cut(s) 87, 161, 439, 462, 969
BsiSI CCGG 2 cut(s) 663, 957
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 636, 885
BsmAI GTCTC 3 cut(s) 51, 462, 634
BsmBI CGTCTC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 2 cut(s) 23, 298
BsnI GGCC 5 cut(s) 87, 161, 439, 462, 969
Bsp143I GATC 5 cut(s) 3, 502, 832, 850, 989
BspACI CCGC 2 cut(s) 162, 885
BspANI GGCC 5 cut(s) 87, 161, 439, 462, 969
BspCNI CTCAG 4 cut(s) 263, 605, 631, 919
BspLI GGNNCC 3 cut(s) 661, 852, 890
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 845, 858, 997
BsrBI CCGCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 1 cut(s) 765
BssMI GATC 5 cut(s) 3, 502, 832, 850, 989
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 221, 379
Bst6I CTCTTC 4 cut(s) 201, 460, 650, 974
BstC8I GCNNGC 2 cut(s) 89, 668
BstDEI CTNAG 6 cut(s) 250, 355, 592, 607, 618, 906
BstENI CCTNNNNNAGG 1 cut(s) 634
BstF5I GGATG 3 cut(s) 189, 210, 245
BstKTI GATC 5 cut(s) 6, 505, 835, 853, 992
BstMAI GTCTC 3 cut(s) 51, 462, 634
BstMBI GATC 5 cut(s) 3, 502, 832, 850, 989
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 2 cut(s) 179, 956
BstSFI CTRYAG 1 cut(s) 880
BstV1I GCAGC 7 cut(s) 103, 175, 419, 506, 721, 850, 904
BstX2I RGATCY 2 cut(s) 850, 989
BstYI RGATCY 2 cut(s) 850, 989
Bsu36I CCTNAGG 1 cut(s) 607
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 5 cut(s) 87, 161, 439, 462, 969
BtsCI GGATG 3 cut(s) 189, 210, 245
BtsI GCAGTG 2 cut(s) 540, 858
BtsIMutI CAGTG 5 cut(s) 258, 540, 626, 772, 858
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 89, 668
CaiI CAGNNNCTG 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 159, 437, 460
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 715
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 6 cut(s) 250, 355, 592, 607, 618, 906
DpnI GATC 5 cut(s) 5, 504, 834, 852, 991
DpnII GATC 5 cut(s) 3, 502, 832, 850, 989
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 4 cut(s) 201, 460, 650, 974
EarI CTCTTC 4 cut(s) 201, 460, 650, 974
Eco57I CTGAAG 2 cut(s) 262, 675
Eco81I CCTNAGG 1 cut(s) 607
EcoNI CCTNNNNNAGG 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 179
EcoT22I ATGCAT 2 cut(s) 210, 790
Esp3I CGTCTC 1 cut(s) 462
FaeI CATG 1 cut(s) 718
FaiI YATR 7 cut(s) 60, 84, 716, 790, 882, 895, 926
FaqI GGGAC 1 cut(s) 487
FatI CATG 1 cut(s) 714
FauI CCCGC 1 cut(s) 878
FbaI TGATCA 2 cut(s) 502, 832
Fnu4HI GCNGC 8 cut(s) 92, 162, 189, 408, 495, 735, 864, 918
FokI GGATG 3 cut(s) 196, 217, 252
Fsp4HI GCNGC 8 cut(s) 92, 162, 189, 408, 495, 735, 864, 918
FspBI CTAG 1 cut(s) 749
GluI GCNGC 8 cut(s) 92, 162, 189, 408, 495, 735, 864, 918
HaeIII GGCC 5 cut(s) 87, 161, 439, 462, 969
HapII CCGG 2 cut(s) 663, 957
Hin1II CATG 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 932
HinfI GANTC 6 cut(s) 400, 524, 642, 686, 761, 827
HpaII CCGG 2 cut(s) 663, 957
HphI GGTGA 3 cut(s) 507, 619, 940
Hpy166II GTNNAC 4 cut(s) 552, 599, 808, 997
Hpy188I TCNGA 2 cut(s) 204, 832
Hpy188III TCNNGA 8 cut(s) 169, 215, 260, 432, 566, 634, 758, 908
Hpy8I GTNNAC 4 cut(s) 552, 599, 808, 997
HpyAV CCTTC 4 cut(s) 239, 484, 640, 841
HpyCH4III ACNGT 2 cut(s) 221, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 6 cut(s) 250, 355, 592, 607, 618, 906
Hsp92II CATG 1 cut(s) 718
Ksp22I TGATCA 2 cut(s) 502, 832
Kzo9I GATC 5 cut(s) 3, 502, 832, 850, 989
LmnI GCTCC 4 cut(s) 128, 301, 665, 757
Lsp1109I GCAGC 7 cut(s) 103, 175, 419, 506, 721, 850, 904
LweI GCATC 4 cut(s) 195, 200, 721, 929
MaeI CTAG 1 cut(s) 749
MalI GATC 5 cut(s) 5, 504, 834, 852, 991
MbiI CCGCTC 1 cut(s) 164
MboI GATC 5 cut(s) 3, 502, 832, 850, 989
MboII GAAGA 7 cut(s) 188, 191, 301, 477, 637, 681, 991
MflI RGATCY 2 cut(s) 850, 989
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 3 cut(s) 310, 442, 874
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 3 cut(s) 394, 533, 636
MnlI CCTC 7 cut(s) 60, 61, 314, 428, 599, 630, 765
Mox20I TGGCCA 1 cut(s) 87
Mph1103I ATGCAT 2 cut(s) 210, 790
MscI TGGCCA 1 cut(s) 87
MseI TTAA 3 cut(s) 144, 345, 873
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 87
MspI CCGG 2 cut(s) 663, 957
MspR9I CCNGG 2 cut(s) 181, 958
Mva1269I GAATGC 2 cut(s) 23, 298
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 416
NciI CCSGG 1 cut(s) 958
NdeII GATC 5 cut(s) 3, 502, 832, 850, 989
NlaIII CATG 1 cut(s) 718
NlaIV GGNNCC 3 cut(s) 661, 852, 890
NsiI ATGCAT 2 cut(s) 210, 790
NspI RCATGY 1 cut(s) 718
PctI GAATGC 2 cut(s) 23, 298
PfeI GAWTC 3 cut(s) 686, 761, 827
PkrI GCNGC 8 cut(s) 93, 163, 190, 409, 496, 736, 865, 919
PleI GAGTC 3 cut(s) 394, 532, 636
PpsI GAGTC 3 cut(s) 394, 532, 636
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 3 cut(s) 661, 852, 890
PspPI GGNCC 3 cut(s) 159, 437, 460
PstNI CAGNNNCTG 1 cut(s) 120
PsuI RGATCY 2 cut(s) 850, 989
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 3 cut(s) 144, 345, 873
SatI GCNGC 8 cut(s) 92, 162, 189, 408, 495, 735, 864, 918
Sau3AI GATC 5 cut(s) 3, 502, 832, 850, 989
Sau96I GGNCC 3 cut(s) 159, 437, 460
SchI GAGTC 3 cut(s) 394, 533, 636
ScrFI CCNGG 2 cut(s) 181, 958
SfaNI GCATC 4 cut(s) 195, 200, 721, 929
SfcI CTRYAG 1 cut(s) 880
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 3 cut(s) 310, 442, 874
SsiI CCGC 2 cut(s) 162, 885
SspMI CTAG 1 cut(s) 749
StyD4I CCNGG 2 cut(s) 179, 956
TaaI ACNGT 2 cut(s) 221, 379
TaqI TCGA 2 cut(s) 319, 336
TasI AATT 3 cut(s) 310, 442, 874
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 686, 761, 827
Tru1I TTAA 3 cut(s) 144, 345, 873
Tru9I TTAA 3 cut(s) 144, 345, 873
TscAI CASTG 5 cut(s) 258, 547, 626, 772, 865
TseI GCWGC 7 cut(s) 91, 188, 407, 494, 734, 863, 917
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 5 cut(s) 258, 547, 626, 772, 865
XagI CCTNNNNNAGG 1 cut(s) 634
XceI RCATGY 1 cut(s) 718
XspI CTAG 1 cut(s) 749
Zsp2I ATGCAT 2 cut(s) 210, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.