Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003419.1

Orthogroup ID

OG0002583

Physical Location & Seq

Genomic Coordinates Reverse (-)

65976 .. 67604

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003419.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggagtacattacccacaagcttttctatgttgtcttgcgttgcctcttgttcctaagccctccttttgtttcctctcagctcaattataagttctatgattcctcttgtcccaacttgagcaagattgttcaacaaggcgttcggtctgctattgcaaatgattctaggattgcagcctcactcttacggcttcacttccatgattgctttgttaatggatgtgacgcatctatacttcttgacgatactagcacacttaagggggagaaaaatgctttgcccaacaaagattcagtcagaggctatgaagtgattgacaaaataaagttagcactggaggaagcttgcccatgcactgtttcctgtactgacatactcactcttgctgcaacctcagctgtttattttagcggagggccatattggcctgtagcactgggacgccgagatggcacaacagcaagtgaagatgcagctaatgacgacttgccatcaccttttgagcccttggaaaacatcactgcaaagtttgcagcaaaaggccttaatttaagggatgttgttgtcctctcaggtgcacacaccataggctttgctcagtgcttcacattcaagacaagactgttcaactttagtgactcgggcaagcctgacccggtattagacacatcacttctaacaaaactacaaaacgtgtgcccaaatcaagctgattctgataccaaattggctccacttgatcctgtcacttccaacaggtttgataacgtttacttcaaaagactggtgaacaaatcagggcttctacagtcagaccaggtccttatgggggacagtacaactgcttcaatggtcatcagctatagcagatttccaaatctgttcaacaaggactttggagcatcaatggtgaagatggcaaatataggtgtgcttactggacaaaatggacaaatcaggaagaattgtagggtggtgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

328

Amino Acids

35.93

Weight (kDa)

7.49

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49570
fragaria_vesca	FvH4_1g15550 FvH4_1g15551 FvH4_1g15551 FvH4_2g06860
malus_domestica	MD02G1167700.v1.1 MD05G1075100.v1.1 MD15G1279900.v1.1
prunus_persica	Prupe.7G137500_v2.0.a1 Prupe.8G116400_v2.0.a1
pyrus_communis	pycom05g06820
rosa_chinensis	RchiOBHm_Chr2g0104851 RchiOBHm_Chr2g0104861 RchiOBHm_Chr6g0259161
rosa_laevigata	RLG00000014552 RLG00000017363 RLG00000017364
rosa_multiflora	Rmu_co8495059.1_g000001 Rmu_sc0003419.1_g000019 Rmu_sc0003419.1_g000021 Rmu_sc0004862.1_g000021
rosa_roxburghii	Rroxscaffold_2G00138710 Rroxscaffold_2G00138720 Rroxscaffold_7G00206470
rosa_rugosa	Rorug02G0123500 Rorug05G0585300
rosa_samantha	Rh2AG173600 Rh2AG173800 Rh2BG181200 Rh2BG181400 Rh2CG178600 Rh2CG178700 Rh2DG179800 Rh2DG180000 Rh6AG102300 Rh6CG091700 Rh6DG085700
rosa_wichuraiana	Rw2G013660 Rw2G013670 Rw6G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AciI	CCGC	1 cut(s)	414
AclI	AACGTT	1 cut(s)	771
AclWI	GGATC	1 cut(s)	737
AcyI	GRCGYC	1 cut(s)	445
AfaI	GTAC	3 cut(s)	8, 370, 841
AfiI	CCNNNNNNNGG	1 cut(s)	832
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	6 cut(s)	134, 616, 631, 781, 852, 889
AjnI	CCWGG	1 cut(s)	819
AluBI	AGCT	7 cut(s)	22, 82, 347, 401, 479, 713, 864
AluI	AGCT	7 cut(s)	22, 82, 347, 401, 479, 713, 864
Alw21I	GWGCWC	1 cut(s)	583
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	737
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	3 cut(s)	419, 428, 544
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	4 cut(s)	176, 389, 476, 536
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspS9I	GGNCC	2 cut(s)	419, 823
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	489, 802, 925
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	823
BaeGI	GKGCMC	2 cut(s)	583, 704
BanII	GRGCYC	1 cut(s)	510
BarI	GAAGNNNNNNTAC	2 cut(s)	832, 864
Bbv12I	GWGCWC	1 cut(s)	583
BbvCI	CCTCAGC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	188, 376, 488, 548
BccI	CCATC	3 cut(s)	446, 502, 913
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	821
BcnI	CCSGG	1 cut(s)	659
BfaI	CTAG	2 cut(s)	168, 252
BfmI	CTRYAG	3 cut(s)	432, 809, 865
BfrI	CTTAAG	1 cut(s)	260
BglI	GCCNNNNNGGC	2 cut(s)	427, 453
BisI	GCNGC	4 cut(s)	177, 390, 477, 537
BlsI	GCNGC	4 cut(s)	178, 391, 478, 538
Bme1390I	CCNGG	2 cut(s)	659, 821
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	419, 823
BmiI	GGNNCC	1 cut(s)	735
BmrFI	CCNGG	2 cut(s)	659, 821
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	3 cut(s)	239, 463, 914
BmuI	ACTGGG	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	359
Bpu10I	CCTNAGC	2 cut(s)	56, 397
BpuEI	CTTGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	659
BsaHI	GRCGYC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	832
Bse1I	ACTGG	4 cut(s)	342, 444, 792, 946
BseBI	CCWGG	1 cut(s)	821
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	227, 565
BseLI	CCNNNNNNNGG	1 cut(s)	832
BseMII	CTCAG	4 cut(s)	92, 411, 588, 614
BseNI	ACTGG	4 cut(s)	342, 444, 792, 946
BseSI	GKGCMC	2 cut(s)	583, 704
BseXI	GCAGC	4 cut(s)	188, 376, 488, 548
BshFI	GGCC	3 cut(s)	421, 430, 546
BsiHKAI	GWGCWC	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	3 cut(s)	96, 456, 848
BslI	CCNNNNNNNGG	1 cut(s)	832
BsmFI	GGGAC	3 cut(s)	96, 456, 848
BsnI	GGCC	3 cut(s)	421, 430, 546
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	3 cut(s)	510, 583, 704
Bsp143I	GATC	1 cut(s)	742
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	3 cut(s)	421, 430, 546
BspCNI	CTCAG	4 cut(s)	91, 410, 587, 613
BspLI	GGNNCC	1 cut(s)	735
BspPI	GGATC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	260
BsrI	ACTGG	4 cut(s)	342, 444, 792, 946
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	1 cut(s)	742
BssNI	GRCGYC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	821
Bst4CI	ACNGT	4 cut(s)	361, 627, 813, 839
BstACI	GRCGYC	1 cut(s)	445
BstAFI	CTTAAG	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	349, 650
BstDEI	CTNAG	5 cut(s)	56, 78, 397, 574, 600
BstF5I	GGATG	2 cut(s)	227, 565
BstKTI	GATC	1 cut(s)	745
BstMBI	GATC	1 cut(s)	742
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 427, 453, 533
BstNI	CCWGG	1 cut(s)	821
BstSCI	CCNGG	2 cut(s)	657, 819
BstSFI	CTRYAG	3 cut(s)	432, 809, 865
BstSLI	GKGCMC	2 cut(s)	583, 704
BstV1I	GCAGC	4 cut(s)	188, 376, 488, 548
BsuRI	GGCC	3 cut(s)	421, 430, 546
BtsCI	GGATG	2 cut(s)	227, 565
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	5 cut(s)	335, 357, 437, 522, 608
Cac8I	GCNNGC	2 cut(s)	349, 650
Cfr13I	GGNCC	2 cut(s)	419, 823
CseI	GACGC	2 cut(s)	236, 453
CsiI	ACCWGGT	1 cut(s)	819
Csp6I	GTAC	3 cut(s)	7, 369, 840
CviAII	CATG	2 cut(s)	203, 354
CviQI	GTAC	3 cut(s)	7, 369, 840
DdeI	CTNAG	5 cut(s)	56, 78, 397, 574, 600
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	510
Eco147I	AGGCCT	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	823
Eco88I	CYCGRG	1 cut(s)	643
EcoO109I	RGGNCCY	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	2 cut(s)	206, 357
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	3 cut(s)	96, 456, 848
FatI	CATG	2 cut(s)	202, 353
Fnu4HI	GCNGC	4 cut(s)	177, 390, 477, 537
FokI	GGATG	2 cut(s)	234, 572
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	4 cut(s)	177, 390, 477, 537
FspBI	CTAG	2 cut(s)	168, 252
GluI	GCNGC	4 cut(s)	177, 390, 477, 537
GsuI	CTGGAG	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	421, 430, 546
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	2 cut(s)	236, 453
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	2 cut(s)	206, 357
HindIII	AAGCTT	2 cut(s)	20, 345
HinfI	GANTC	5 cut(s)	101, 164, 293, 641, 716
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	3 cut(s)	489, 802, 925
Hpy166II	GTNNAC	3 cut(s)	581, 775, 793
Hpy188I	TCNGA	3 cut(s)	302, 721, 817
Hpy188III	TCNNGA	3 cut(s)	242, 616, 961
Hpy8I	GTNNAC	3 cut(s)	581, 775, 793
HpyCH4III	ACNGT	4 cut(s)	361, 627, 813, 839
HpyCH4IV	ACGT	2 cut(s)	696, 771
HpyCH4V	TGCA	8 cut(s)	158, 176, 357, 392, 476, 527, 536, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 427, 453, 533
HpyF3I	CTNAG	5 cut(s)	56, 78, 397, 574, 600
HpySE526I	ACGT	2 cut(s)	696, 771
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	2 cut(s)	206, 357
Kzo9I	GATC	1 cut(s)	742
LmnI	GCTCC	2 cut(s)	739, 902
Lsp1109I	GCAGC	4 cut(s)	188, 376, 488, 548
LweI	GCATC	3 cut(s)	239, 463, 914
MabI	ACCWGGT	1 cut(s)	819
MaeI	CTAG	2 cut(s)	168, 252
MaeII	ACGT	2 cut(s)	696, 771
MaeIII	GTNAC	3 cut(s)	224, 638, 748
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MboII	GAAGA	3 cut(s)	482, 928, 976
MhlI	GDGCHC	3 cut(s)	510, 583, 704
MluCI	AATT	5 cut(s)	85, 550, 728, 967, 982
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	780
MseI	TTAA	4 cut(s)	216, 261, 549, 554
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	659, 821
MvaI	CCWGG	1 cut(s)	821
MwoI	GCNNNNNNNGC	4 cut(s)	398, 427, 453, 533
NciI	CCSGG	1 cut(s)	659
NdeII	GATC	1 cut(s)	742
NlaIII	CATG	2 cut(s)	206, 357
NlaIV	GGNNCC	1 cut(s)	735
NmeAIII	GCCGAG	1 cut(s)	473
NmuCI	GTSAC	3 cut(s)	224, 638, 748
PceI	AGGCCT	1 cut(s)	546
PfeI	GAWTC	4 cut(s)	101, 164, 293, 716
PflFI	GACNNNGTC	1 cut(s)	821
PkrI	GCNGC	4 cut(s)	178, 391, 478, 538
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	823
PsiI	TTATAA	1 cut(s)	90
Psp1406I	AACGTT	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	819
PspGI	CCWGG	1 cut(s)	819
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	2 cut(s)	419, 823
PspPPI	RGGWCCY	1 cut(s)	823
PsyI	GACNNNGTC	1 cut(s)	821
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	8, 370, 841
RsaNI	GTAC	3 cut(s)	7, 369, 840
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	4 cut(s)	216, 261, 549, 554
SatI	GCNGC	4 cut(s)	177, 390, 477, 537
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	2 cut(s)	419, 823
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	2 cut(s)	659, 821
SduI	GDGCHC	3 cut(s)	510, 583, 704
SexAI	ACCWGGT	1 cut(s)	819
SfaNI	GCATC	3 cut(s)	239, 463, 914
SfcI	CTRYAG	3 cut(s)	432, 809, 865
SfiI	GGCCNNNNNGGCC	1 cut(s)	427
SinI	GGWCC	1 cut(s)	823
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	118, 260
SmoI	CTYRAG	2 cut(s)	118, 260
Sse9I	AATT	5 cut(s)	85, 550, 728, 967, 982
SseBI	AGGCCT	1 cut(s)	546
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	2 cut(s)	168, 252
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	657, 819
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	4 cut(s)	361, 627, 813, 839
TaiI	ACGT	2 cut(s)	699, 774
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	85, 550, 728, 967, 982
TatI	WGTACW	3 cut(s)	6, 368, 839
TfiI	GAWTC	4 cut(s)	101, 164, 293, 716
Tru1I	TTAA	4 cut(s)	216, 261, 549, 554
Tru9I	TTAA	4 cut(s)	216, 261, 549, 554
TscAI	CASTG	5 cut(s)	342, 364, 444, 529, 608
TseFI	GTSAC	3 cut(s)	224, 638, 748
TseI	GCWGC	4 cut(s)	176, 389, 476, 536
Tsp45I	GTSAC	3 cut(s)	224, 638, 748
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	5 cut(s)	342, 364, 444, 529, 608
Tth111I	GACNNNGTC	1 cut(s)	821
Vha464I	CTTAAG	1 cut(s)	260
VneI	GTGCAC	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	823
XspI	CTAG	2 cut(s)	168, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.