RchiOBHm_Chr6g0259161

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002583
Physical Location & Seq
Reverse (-)
14468545 .. 14472438
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23237

Sequence Viewer

Length: 948 bp
ATGCTTTGGTTCGAGAGGTATCCCTTTCCTTATGGCCAGCAGCTTGATTCCAATTTCTACGACAGAACCTGCCCCCACTTGCCGATGATTGTTAAGTACAATGTCTGGGCCGCTCTCAAGAATGACACCAGGATGGCTGCATCTCTTCTTCGGATGCATTTTCACGACTGTATTGTTGATGGATGTGAAGGCTCAGTGCTTCTTGATGACACACAAGACTTCAGGGGCGAGAAGAATGCTCCACCAAATCGCAATTCACTTCGAGGGTTTGAAGTCATCGACAACATTAAAACAGACTTAGAGAGATTTTGCCCATCAACTGTTTCTTGTGCTGATATTTTGACTCTTGCAGCAAGAGAAGCAGTTGTTCTGTCAGGAGGGCCTAATTGGAATGTTCCATTGGGCCGAAGAGACGGGACAACTGCGAGTGAGAAAGCAGCTATTGATCAAATACCATCACCTATTGAGTCTTTACAGAAAATCACTGCCAAGTTCACATCGAAGGGTCTTGACATCAAAGATGTTGTAGTCCTCTCAGGTGGACACACATTAGGTTATGCTCAGTGCTTCACCTTCAAGAGGAGACTCTTCAACTTTGACGGCTCCGGCAACCCTGACCCTACGCTTGATTCTTCAGTCCTTACAAACTTGCAAAGCATGTGTCCAAATAAAGATGCTGCAAACAGCAATCTAGCTCCTCTTGATTCCAGTGCTTACAGATTCGACAATGTATATTACACAAACCTTGTTTACAACGCAGGTCTTTTAGAATCTGATCAGGCATTAGTGAAGGATCCAAACACTGCTGCAATGGTTAATTCCTATAGCGGGAGCCCATTTCTTTTCTCTCAGGATTTTGCTGCATCTATGGTGAAGCTTGGTAATGTGGGAGTATTGACTGGGCAAAAAGGCCAGATAAGGAAGAGATGTGGATCTGTGAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

315

Amino Acids

34.64

Weight (kDa)

6.1

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 31 - 276 8.5e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 77, 749
AccBSI CCGCTC 1 cut(s) 113
AciI CCGC 2 cut(s) 111, 828
AclWI GGATC 3 cut(s) 788, 801, 940
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 205, 618
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 579, 828
AgsI TTSAA 3 cut(s) 272, 577, 592
AjnI CCWGG 1 cut(s) 128
AjuI GAANNNNNNNTTGG 4 cut(s) 238, 270, 383, 415
AluBI AGCT 4 cut(s) 43, 440, 695, 877
AluI AGCT 4 cut(s) 43, 440, 695, 877
Alw26I GTCTC 2 cut(s) 405, 577
AlwI GGATC 3 cut(s) 788, 801, 940
AlwNI CAGNNNCTG 1 cut(s) 69
AoxI GGCC 5 cut(s) 34, 108, 380, 403, 910
ApeKI GCWGC 7 cut(s) 40, 137, 350, 437, 677, 806, 860
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
AspS9I GGNCC 3 cut(s) 108, 380, 403
AsuHPI GGTGA 3 cut(s) 450, 562, 883
BalI TGGCCA 1 cut(s) 36
BamHI GGATCC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 836
BbvI GCAGC 7 cut(s) 52, 124, 362, 449, 664, 793, 847
BccI CCATC 4 cut(s) 127, 173, 322, 463
BceAI ACGGC 1 cut(s) 616
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 130
BciVI GTATCC 1 cut(s) 30
BclI TGATCA 2 cut(s) 445, 775
BcoDI GTCTC 2 cut(s) 405, 577
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 1 cut(s) 823
BfuAI ACCTGC 2 cut(s) 77, 749
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 8 cut(s) 41, 111, 138, 351, 438, 678, 807, 861
BlsI GCNGC 8 cut(s) 42, 112, 139, 352, 439, 679, 808, 862
Bme1390I CCNGG 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 108, 380, 403
BmiI GGNNCC 3 cut(s) 604, 795, 833
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 909
BmsI GCATC 4 cut(s) 144, 149, 664, 872
BmuI ACTGGG 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 931
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 828
Bse1I ACTGG 2 cut(s) 708, 904
Bse3DI GCAATG 1 cut(s) 816
Bse8I GATNNNNATC 1 cut(s) 931
BseBI CCWGG 1 cut(s) 130
BseGI GGATG 3 cut(s) 138, 159, 188
BseJI GATNNNNATC 1 cut(s) 931
BseLI CCNNNNNNNGG 2 cut(s) 579, 828
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 4 cut(s) 207, 549, 575, 863
BseNI ACTGG 2 cut(s) 708, 904
BseRI GAGGAG 2 cut(s) 595, 687
BseXI GCAGC 7 cut(s) 52, 124, 362, 449, 664, 793, 847
BshFI GGCC 5 cut(s) 36, 110, 382, 405, 912
BsiSI CCGG 1 cut(s) 606
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 2 cut(s) 579, 828
BsmAI GTCTC 2 cut(s) 405, 577
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 5 cut(s) 36, 110, 382, 405, 912
Bsp1286I GDGCHC 1 cut(s) 836
Bsp143I GATC 4 cut(s) 445, 775, 793, 932
BspACI CCGC 2 cut(s) 111, 828
BspANI GGCC 5 cut(s) 36, 110, 382, 405, 912
BspCNI CTCAG 4 cut(s) 206, 548, 574, 862
BspLI GGNNCC 3 cut(s) 604, 795, 833
BspMI ACCTGC 2 cut(s) 77, 749
BspPI GGATC 3 cut(s) 788, 801, 940
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 816
BsrI ACTGG 2 cut(s) 708, 904
BssMI GATC 4 cut(s) 445, 775, 793, 932
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 170, 322
Bst6I CTCTTC 4 cut(s) 150, 403, 593, 917
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 5 cut(s) 193, 298, 535, 561, 849
BstENI CCTNNNNNAGG 1 cut(s) 577
BstF5I GGATG 3 cut(s) 138, 159, 188
BstKTI GATC 4 cut(s) 448, 778, 796, 935
BstMAI GTCTC 2 cut(s) 405, 577
BstMBI GATC 4 cut(s) 445, 775, 793, 932
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 823
BstV1I GCAGC 7 cut(s) 52, 124, 362, 449, 664, 793, 847
BstX2I RGATCY 2 cut(s) 793, 932
BstYI RGATCY 2 cut(s) 793, 932
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 5 cut(s) 36, 110, 382, 405, 912
BtsCI GGATG 3 cut(s) 138, 159, 188
BtsI GCAGTG 2 cut(s) 483, 801
BtsIMutI CAGTG 5 cut(s) 201, 483, 569, 715, 801
BveI ACCTGC 2 cut(s) 77, 749
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 108, 380, 403
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 658
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 5 cut(s) 193, 298, 535, 561, 849
DpnI GATC 4 cut(s) 447, 777, 795, 934
DpnII GATC 4 cut(s) 445, 775, 793, 932
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 4 cut(s) 150, 403, 593, 917
EarI CTCTTC 4 cut(s) 150, 403, 593, 917
Eco24I GRGCYC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 205, 618
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 836
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 1 cut(s) 661
FaiI YATR 6 cut(s) 33, 558, 659, 733, 825, 869
FaqI GGGAC 1 cut(s) 430
FatI CATG 1 cut(s) 657
FauI CCCGC 1 cut(s) 821
FbaI TGATCA 2 cut(s) 445, 775
Fnu4HI GCNGC 8 cut(s) 41, 111, 138, 351, 438, 678, 807, 861
FokI GGATG 3 cut(s) 145, 166, 195
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 8 cut(s) 41, 111, 138, 351, 438, 678, 807, 861
FspBI CTAG 1 cut(s) 692
GluI GCNGC 8 cut(s) 41, 111, 138, 351, 438, 678, 807, 861
HaeIII GGCC 5 cut(s) 36, 110, 382, 405, 912
HapII CCGG 1 cut(s) 606
Hin1II CATG 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 8 cut(s) 47, 343, 467, 585, 629, 704, 720, 770
HpaII CCGG 1 cut(s) 606
HphI GGTGA 3 cut(s) 450, 562, 883
Hpy166II GTNNAC 4 cut(s) 495, 542, 751, 940
Hpy188I TCNGA 2 cut(s) 153, 775
Hpy188III TCNNGA 9 cut(s) 13, 118, 164, 203, 375, 509, 577, 701, 851
Hpy8I GTNNAC 4 cut(s) 495, 542, 751, 940
HpyAV CCTTC 4 cut(s) 182, 496, 583, 784
HpyCH4III ACNGT 2 cut(s) 170, 322
HpyCH4V TGCA 7 cut(s) 140, 157, 350, 652, 680, 809, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 5 cut(s) 193, 298, 535, 561, 849
Hsp92II CATG 1 cut(s) 661
Ksp22I TGATCA 2 cut(s) 445, 775
Kzo9I GATC 4 cut(s) 445, 775, 793, 932
LmnI GCTCC 4 cut(s) 244, 608, 700, 831
Lsp1109I GCAGC 7 cut(s) 52, 124, 362, 449, 664, 793, 847
LweI GCATC 4 cut(s) 144, 149, 664, 872
MaeI CTAG 1 cut(s) 692
MalI GATC 4 cut(s) 447, 777, 795, 934
MbiI CCGCTC 1 cut(s) 113
MboI GATC 4 cut(s) 445, 775, 793, 932
MboII GAAGA 7 cut(s) 137, 140, 244, 420, 580, 624, 934
MflI RGATCY 2 cut(s) 793, 932
MhlI GDGCHC 1 cut(s) 836
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 4 cut(s) 52, 253, 385, 817
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 3 cut(s) 337, 476, 579
MnlI CCTC 6 cut(s) 9, 257, 371, 542, 573, 708
Mox20I TGGCCA 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 159
MscI TGGCCA 1 cut(s) 36
MseI TTAA 3 cut(s) 93, 288, 816
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 4 cut(s) 445, 775, 793, 932
NlaIII CATG 1 cut(s) 661
NlaIV GGNNCC 3 cut(s) 604, 795, 833
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 1 cut(s) 661
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 5 cut(s) 47, 629, 704, 720, 770
PkrI GCNGC 8 cut(s) 42, 112, 139, 352, 439, 679, 808, 862
PleI GAGTC 3 cut(s) 337, 475, 579
PpsI GAGTC 3 cut(s) 337, 475, 579
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 3 cut(s) 604, 795, 833
PspPI GGNCC 3 cut(s) 108, 380, 403
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 793, 932
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 3 cut(s) 93, 288, 816
SatI GCNGC 8 cut(s) 41, 111, 138, 351, 438, 678, 807, 861
Sau3AI GATC 4 cut(s) 445, 775, 793, 932
Sau96I GGNCC 3 cut(s) 108, 380, 403
SchI GAGTC 3 cut(s) 337, 476, 579
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 836
SfaNI GCATC 4 cut(s) 144, 149, 664, 872
SfcI CTRYAG 1 cut(s) 823
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 4 cut(s) 52, 253, 385, 817
SsiI CCGC 2 cut(s) 111, 828
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 170, 322
TaqI TCGA 5 cut(s) 12, 262, 279, 500, 723
TasI AATT 4 cut(s) 52, 253, 385, 817
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 5 cut(s) 47, 629, 704, 720, 770
Tru1I TTAA 3 cut(s) 93, 288, 816
Tru9I TTAA 3 cut(s) 93, 288, 816
TscAI CASTG 5 cut(s) 201, 490, 569, 715, 808
TseI GCWGC 7 cut(s) 40, 137, 350, 437, 677, 806, 860
TspRI CASTG 5 cut(s) 201, 490, 569, 715, 808
XagI CCTNNNNNAGG 1 cut(s) 577
XceI RCATGY 1 cut(s) 661
XspI CTAG 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.