Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495059.1

Orthogroup ID

OG0002583

Physical Location & Seq

Genomic Coordinates Forward (+)

163 .. 2323

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgatctcctacttcactcttgcattctgtttattcttgtttttgtctccctatgttcatagcgagaggtatccctttccttatggccagcagcttgattacaatttctacgacagaacctgcccccacttgccgaggattgttaagtacaatgtctgggccgctctcaagaatgacaccaggatggctgcatctcttcttcggatgcattttcacgactgtattgttgatggatgtgaaggctcagtgcttcttgatgacacacaagacttcaggggcgagaagaatgctccaccaaatcgcaattcacttcgagggtttgaagtcatcgacaacattaaaacagacttagagagattttgcccatcaactgtttcttgtgctgatattttgactcttgcagcaagagaagcagttgttctgtcaggagggcctaattggaatgttccattgggccgaagagacgggacaactgcgagtgagaaagcagctattgatcaaataccatcacctattgagtctttacagaaaatcactgccaagttcacatcgaagggtcttgacatcaaagatgttgtagtcctctcaggtggacacacattaggttatgctcagtgcttcaccttcaagaggagactctttaactttgacggctccggcaaccctgaccctacgcttgattcttcagtccttacaaacttgcaaagcatgtgtccaaataaagatgctgcaaacagcaatctagctcctcttgattccagtgcttacagattcgacaatgtatattacacaaaccttgtttacaacgcaggtcttttagaatctgatcaggcattagtgaaggatccaaacactgctgcaatggttaattcctatagcgggagcccatttcttttctctcaggattttgctgcatctatggtgaagcttggtaatgtgggagtattgactgggcaaagaggccagataaggaagagatgtggatctgtgaactcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

332

Amino Acids

36.67

Weight (kDa)

6.52

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49570
fragaria_vesca	FvH4_1g15550 FvH4_1g15551 FvH4_1g15551 FvH4_2g06860
malus_domestica	MD02G1167700.v1.1 MD05G1075100.v1.1 MD15G1279900.v1.1
prunus_persica	Prupe.7G137500_v2.0.a1 Prupe.8G116400_v2.0.a1
pyrus_communis	pycom05g06820
rosa_chinensis	RchiOBHm_Chr2g0104851 RchiOBHm_Chr2g0104861 RchiOBHm_Chr6g0259161
rosa_laevigata	RLG00000014552 RLG00000017363 RLG00000017364
rosa_multiflora	Rmu_co8495059.1_g000001 Rmu_sc0003419.1_g000019 Rmu_sc0003419.1_g000021 Rmu_sc0004862.1_g000021
rosa_roxburghii	Rroxscaffold_2G00138710 Rroxscaffold_2G00138720 Rroxscaffold_7G00206470
rosa_rugosa	Rorug02G0123500 Rorug05G0585300
rosa_samantha	Rh2AG173600 Rh2AG173800 Rh2BG181200 Rh2BG181400 Rh2CG178600 Rh2CG178700 Rh2DG179800 Rh2DG180000 Rh6AG102300 Rh6CG091700 Rh6DG085700
rosa_wichuraiana	Rw2G013660 Rw2G013670 Rw6G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	128, 800
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	2 cut(s)	162, 879
AclWI	GGATC	3 cut(s)	839, 852, 991
AcoI	YGGCCR	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	256, 669
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	630, 879
AgsI	TTSAA	2 cut(s)	323, 628
AjnI	CCWGG	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	4 cut(s)	289, 321, 434, 466
AluBI	AGCT	4 cut(s)	94, 491, 746, 928
AluI	AGCT	4 cut(s)	94, 491, 746, 928
Alw26I	GTCTC	3 cut(s)	51, 456, 628
AlwI	GGATC	3 cut(s)	839, 852, 991
AlwNI	CAGNNNCTG	1 cut(s)	120
AoxI	GGCC	5 cut(s)	85, 159, 431, 454, 961
ApeKI	GCWGC	7 cut(s)	91, 188, 401, 488, 728, 857, 911
ArsI	GACNNNNNNTTYG	2 cut(s)	697, 729
AspS9I	GGNCC	3 cut(s)	159, 431, 454
AsuHPI	GGTGA	3 cut(s)	501, 613, 934
BalI	TGGCCA	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	887
BbvI	GCAGC	7 cut(s)	103, 175, 413, 500, 715, 844, 898
BccI	CCATC	4 cut(s)	178, 224, 373, 514
BceAI	ACGGC	1 cut(s)	667
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	181
BciVI	GTATCC	1 cut(s)	81
BclI	TGATCA	2 cut(s)	496, 826
BcoDI	GTCTC	3 cut(s)	51, 456, 628
BfaI	CTAG	1 cut(s)	743
BfmI	CTRYAG	1 cut(s)	874
BfuAI	ACCTGC	2 cut(s)	128, 800
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	8 cut(s)	92, 162, 189, 402, 489, 729, 858, 912
BlsI	GCNGC	8 cut(s)	93, 163, 190, 403, 490, 730, 859, 913
Bme1390I	CCNGG	1 cut(s)	181
BmgT120I	GGNCC	3 cut(s)	159, 431, 454
BmiI	GGNNCC	3 cut(s)	655, 846, 884
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	960
BmsI	GCATC	4 cut(s)	195, 200, 715, 923
BmuI	ACTGGG	1 cut(s)	960
BpuEI	CTTGAG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	982
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	630, 879
Bse1I	ACTGG	2 cut(s)	759, 955
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	982
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	3 cut(s)	189, 210, 239
BseJI	GATNNNNATC	1 cut(s)	982
BseLI	CCNNNNNNNGG	2 cut(s)	630, 879
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	4 cut(s)	258, 600, 626, 914
BseNI	ACTGG	2 cut(s)	759, 955
BseRI	GAGGAG	2 cut(s)	646, 738
BseXI	GCAGC	7 cut(s)	103, 175, 413, 500, 715, 844, 898
BshFI	GGCC	5 cut(s)	87, 161, 433, 456, 963
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	2 cut(s)	630, 879
BsmAI	GTCTC	3 cut(s)	51, 456, 628
BsmBI	CGTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	2 cut(s)	23, 292
BsnI	GGCC	5 cut(s)	87, 161, 433, 456, 963
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp143I	GATC	5 cut(s)	3, 496, 826, 844, 983
BspACI	CCGC	2 cut(s)	162, 879
BspANI	GGCC	5 cut(s)	87, 161, 433, 456, 963
BspCNI	CTCAG	4 cut(s)	257, 599, 625, 913
BspLI	GGNNCC	3 cut(s)	655, 846, 884
BspMI	ACCTGC	2 cut(s)	128, 800
BspPI	GGATC	3 cut(s)	839, 852, 991
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	759, 955
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	5 cut(s)	3, 496, 826, 844, 983
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	221, 373
Bst6I	CTCTTC	3 cut(s)	201, 454, 968
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	5 cut(s)	244, 349, 586, 612, 900
BstENI	CCTNNNNNAGG	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	189, 210, 239
BstKTI	GATC	5 cut(s)	6, 499, 829, 847, 986
BstMAI	GTCTC	3 cut(s)	51, 456, 628
BstMBI	GATC	5 cut(s)	3, 496, 826, 844, 983
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	874
BstV1I	GCAGC	7 cut(s)	103, 175, 413, 500, 715, 844, 898
BstX2I	RGATCY	2 cut(s)	844, 983
BstYI	RGATCY	2 cut(s)	844, 983
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	5 cut(s)	87, 161, 433, 456, 963
BtsCI	GGATG	3 cut(s)	189, 210, 239
BtsI	GCAGTG	2 cut(s)	534, 852
BtsIMutI	CAGTG	5 cut(s)	252, 534, 620, 766, 852
BveI	ACCTGC	2 cut(s)	128, 800
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	159, 431, 454
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	709
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	5 cut(s)	244, 349, 586, 612, 900
DpnI	GATC	5 cut(s)	5, 498, 828, 846, 985
DpnII	GATC	5 cut(s)	3, 496, 826, 844, 983
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	3 cut(s)	201, 454, 968
EarI	CTCTTC	3 cut(s)	201, 454, 968
Eco24I	GRGCYC	1 cut(s)	887
Eco57I	CTGAAG	2 cut(s)	256, 669
EcoNI	CCTNNNNNAGG	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	887
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	1 cut(s)	712
FaiI	YATR	8 cut(s)	54, 60, 84, 609, 710, 784, 876, 920
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	708
FauI	CCCGC	1 cut(s)	872
FbaI	TGATCA	2 cut(s)	496, 826
Fnu4HI	GCNGC	8 cut(s)	92, 162, 189, 402, 489, 729, 858, 912
FokI	GGATG	3 cut(s)	196, 217, 246
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	8 cut(s)	92, 162, 189, 402, 489, 729, 858, 912
FspBI	CTAG	1 cut(s)	743
GluI	GCNGC	8 cut(s)	92, 162, 189, 402, 489, 729, 858, 912
HaeIII	GGCC	5 cut(s)	87, 161, 433, 456, 963
HapII	CCGG	1 cut(s)	657
Hin1II	CATG	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	7 cut(s)	394, 518, 636, 680, 755, 771, 821
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	3 cut(s)	501, 613, 934
Hpy166II	GTNNAC	4 cut(s)	546, 593, 802, 991
Hpy188I	TCNGA	2 cut(s)	204, 826
Hpy188III	TCNNGA	8 cut(s)	169, 215, 254, 426, 560, 628, 752, 902
Hpy8I	GTNNAC	4 cut(s)	546, 593, 802, 991
HpyAV	CCTTC	4 cut(s)	233, 547, 634, 835
HpyCH4III	ACNGT	2 cut(s)	221, 373
HpyCH4V	TGCA	8 cut(s)	23, 191, 208, 401, 703, 731, 860, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	5 cut(s)	244, 349, 586, 612, 900
Hsp92II	CATG	1 cut(s)	712
Ksp22I	TGATCA	2 cut(s)	496, 826
Kzo9I	GATC	5 cut(s)	3, 496, 826, 844, 983
LmnI	GCTCC	4 cut(s)	295, 659, 751, 882
Lsp1109I	GCAGC	7 cut(s)	103, 175, 413, 500, 715, 844, 898
LweI	GCATC	4 cut(s)	195, 200, 715, 923
MaeI	CTAG	1 cut(s)	743
MalI	GATC	5 cut(s)	5, 498, 828, 846, 985
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	5 cut(s)	3, 496, 826, 844, 983
MboII	GAAGA	6 cut(s)	188, 191, 295, 471, 675, 985
MflI	RGATCY	2 cut(s)	844, 983
MhlI	GDGCHC	1 cut(s)	887
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	4 cut(s)	103, 304, 436, 868
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	3 cut(s)	388, 527, 630
MnlI	CCTC	8 cut(s)	60, 129, 308, 422, 593, 624, 759, 953
Mox20I	TGGCCA	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	4 cut(s)	144, 339, 642, 867
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	87
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	2 cut(s)	23, 292
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	5 cut(s)	3, 496, 826, 844, 983
NlaIII	CATG	1 cut(s)	712
NlaIV	GGNNCC	3 cut(s)	655, 846, 884
NmeAIII	GCCGAG	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	210
NspI	RCATGY	1 cut(s)	712
PctI	GAATGC	2 cut(s)	23, 292
PfeI	GAWTC	4 cut(s)	680, 755, 771, 821
PkrI	GCNGC	8 cut(s)	93, 163, 190, 403, 490, 730, 859, 913
PleI	GAGTC	3 cut(s)	388, 526, 630
PpsI	GAGTC	3 cut(s)	388, 526, 630
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	655, 846, 884
PspPI	GGNCC	3 cut(s)	159, 431, 454
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	844, 983
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	144, 339, 642, 867
SatI	GCNGC	8 cut(s)	92, 162, 189, 402, 489, 729, 858, 912
Sau3AI	GATC	5 cut(s)	3, 496, 826, 844, 983
Sau96I	GGNCC	3 cut(s)	159, 431, 454
SchI	GAGTC	3 cut(s)	388, 527, 630
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	887
SfaNI	GCATC	4 cut(s)	195, 200, 715, 923
SfcI	CTRYAG	1 cut(s)	874
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	103, 304, 436, 868
SsiI	CCGC	2 cut(s)	162, 879
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	221, 373
TaqI	TCGA	4 cut(s)	313, 330, 551, 774
TasI	AATT	4 cut(s)	103, 304, 436, 868
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	4 cut(s)	680, 755, 771, 821
Tru1I	TTAA	4 cut(s)	144, 339, 642, 867
Tru9I	TTAA	4 cut(s)	144, 339, 642, 867
TscAI	CASTG	5 cut(s)	252, 541, 620, 766, 859
TseI	GCWGC	7 cut(s)	91, 188, 401, 488, 728, 857, 911
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	5 cut(s)	252, 541, 620, 766, 859
XagI	CCTNNNNNAGG	1 cut(s)	628
XceI	RCATGY	1 cut(s)	712
XspI	CTAG	1 cut(s)	743
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.