FvH4_1g15550

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002583
Physical Location & Seq
Forward (+)
8829058 .. 8830926
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15550.t1

Sequence Viewer

Length: 999 bp
ATGGATCACATTACCTACAAGCTTTCCTATGTTGCCTTGCTCTGCCTCTTGTTCCTAAGCCCTCCTTTTGTTTCCTCTGAGCTCAGTTATAAGTTCTATGATTCCTCTTGTCCCAACTTGAGCAAAATTGTTCAAGATGGCGTTCGGTCTGCTATTGCAAATGATTCTAGGATTGCAGCCTCACTATTGCGGCTTCACTTCCATGATTGCTTTGTTAGTGGGTGTGATGCATCTATACTACTTGATGATACAAGCACTCTTAAGGGGGAGAAAAATGCCCTGCCCAACAAAGATTCAGCAAGAGGCTATGAAGTGATTGACAAAATCAAGTTAGCCCTGGAGGAAGCTTGCCCATGCACTGTTTCTTGTACTGACATACTCACTCTTGCAGCAACCTCAGCAGTTTATTTTAGCGGAGGTCCATATTGGCCAGTAGCATTGGGTCGCCGAGACGGCTTAACGGCAAGCATAGATGCAGCAAACAACGACTTGCCATCACCTTTTGAGCCCTTGGAAAATATTACTGCAAAGTTTGCTGCAAAAGGCCTTGATTTACAAGATGTTGTTGTCCTCTCAGGTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTGGTGACTCAGGCAAACCTGACCCTGTATTAGACACATCAACTTTAACAAAATTACAAAGAGTCTGCCCAAATCAAGCTGATTCTGATACCAAATTGGCTCCACTTGATTCTGTCACTTCCACCAAATTTGACAACTTTTACTTCAAACGACTCGTGAACAAATCTGGGCTTCTACAGTCAGACCAGCTTCTCATGGGGGACAATAGGACTGCTTCAATGGTGATCAGCTATAGCAGATTTGCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAACATAGGTGTTCTCACTGGACAAAATGGACAGATCAGGAGGAATTGTAGGGTGGTGAATTCGAATAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

36.24

Weight (kDa)

7.48

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 290 2.5e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AciI CCGC 2 cut(s) 190, 414
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 2 cut(s) 761, 982
AfaI GTAC 1 cut(s) 370
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 6 cut(s) 134, 616, 631, 781, 852, 889
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 6 cut(s) 22, 82, 347, 713, 823, 864
AluI AGCT 6 cut(s) 22, 82, 347, 713, 823, 864
Alw21I GWGCWC 2 cut(s) 84, 583
Alw26I GTCTC 1 cut(s) 444
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 428, 544
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 4 cut(s) 176, 389, 476, 536
ApoI RAATTY 2 cut(s) 761, 982
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 5 cut(s) 489, 650, 868, 925, 991
AsuII TTCGAA 1 cut(s) 986
AvaII GGWCC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 583
BalI TGGCCA 1 cut(s) 430
BanII GRGCYC 2 cut(s) 84, 510
BauI CACGAG 1 cut(s) 788
Bbv12I GWGCWC 2 cut(s) 84, 583
BbvCI CCTCAGC 1 cut(s) 397
BbvI GCAGC 4 cut(s) 188, 401, 488, 523
BccI CCATC 3 cut(s) 131, 502, 913
BceAI ACGGC 2 cut(s) 469, 477
BciT130I CCWGG 1 cut(s) 338
BclI TGATCA 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 2 cut(s) 809, 865
BfrI CTTAAG 1 cut(s) 260
BglI GCCNNNNNGGC 1 cut(s) 453
BisI GCNGC 5 cut(s) 177, 191, 390, 477, 537
BlsI GCNGC 5 cut(s) 178, 192, 391, 478, 538
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 4 cut(s) 217, 239, 463, 914
BpmI CTGGAG 1 cut(s) 359
Bpu10I CCTNAGC 2 cut(s) 56, 397
Bpu14I TTCGAA 1 cut(s) 986
BpuEI CTTGAG 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 336, 510
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bse1I ACTGG 2 cut(s) 431, 946
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 336, 510
BseMII CTCAG 6 cut(s) 69, 97, 411, 588, 614, 657
BseNI ACTGG 2 cut(s) 431, 946
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 4 cut(s) 188, 401, 488, 523
BshFI GGCC 2 cut(s) 430, 546
BsiHKAI GWGCWC 2 cut(s) 84, 583
BslFI GGGAC 2 cut(s) 96, 848
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 2 cut(s) 96, 848
BsnI GGCC 2 cut(s) 430, 546
Bsp119I TTCGAA 1 cut(s) 986
Bsp1286I GDGCHC 3 cut(s) 84, 510, 583
Bsp143I GATC 3 cut(s) 4, 858, 957
BspACI CCGC 2 cut(s) 190, 414
BspANI GGCC 2 cut(s) 430, 546
BspCNI CTCAG 6 cut(s) 70, 96, 410, 587, 613, 656
BspLI GGNNCC 1 cut(s) 735
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 986
BspTI CTTAAG 1 cut(s) 260
BsrI ACTGG 2 cut(s) 431, 946
BssECI CCNNGG 2 cut(s) 336, 510
BssMI GATC 3 cut(s) 4, 858, 957
BssSI CACGAG 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 788
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 361, 627, 813
BstAFI CTTAAG 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 533
BstBI TTCGAA 1 cut(s) 986
BstC8I GCNNGC 2 cut(s) 349, 466
BstDEI CTNAG 7 cut(s) 56, 78, 83, 397, 574, 600, 643
BstKTI GATC 3 cut(s) 7, 861, 960
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 4, 858, 957
BstMWI GCNNNNNNNGC 3 cut(s) 398, 453, 533
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 2 cut(s) 809, 865
BstSLI GKGCMC 1 cut(s) 583
BstV1I GCAGC 4 cut(s) 188, 401, 488, 523
BsuRI GGCC 2 cut(s) 430, 546
BtsIMutI CAGTG 3 cut(s) 357, 608, 939
Cac8I GCNNGC 2 cut(s) 349, 466
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 369
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 3 cut(s) 203, 354, 829
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 7 cut(s) 56, 78, 83, 397, 574, 600, 643
DpnI GATC 3 cut(s) 6, 860, 959
DpnII GATC 3 cut(s) 4, 858, 957
EaeI YGGCCR 1 cut(s) 428
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 510
Eco147I AGGCCT 1 cut(s) 546
Eco24I GRGCYC 2 cut(s) 84, 510
Eco47I GGWCC 1 cut(s) 419
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 84, 510
ErhI CCWWGG 1 cut(s) 510
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 206, 357, 832
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 2 cut(s) 96, 848
FatI CATG 3 cut(s) 202, 353, 828
FbaI TGATCA 1 cut(s) 858
Fnu4HI GCNGC 5 cut(s) 177, 191, 390, 477, 537
FriOI GRGCYC 2 cut(s) 84, 510
Fsp4HI GCNGC 5 cut(s) 177, 191, 390, 477, 537
FspBI CTAG 1 cut(s) 168
GluI GCNGC 5 cut(s) 177, 191, 390, 477, 537
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 2 cut(s) 430, 546
Hin1II CATG 3 cut(s) 206, 357, 832
HindIII AAGCTT 2 cut(s) 20, 345
HinfI GANTC 8 cut(s) 101, 164, 293, 641, 696, 716, 743, 786
HphI GGTGA 5 cut(s) 489, 650, 868, 925, 991
Hpy166II GTNNAC 2 cut(s) 581, 793
Hpy188I TCNGA 3 cut(s) 79, 721, 817
Hpy188III TCNNGA 4 cut(s) 134, 616, 790, 961
Hpy8I GTNNAC 2 cut(s) 581, 793
HpyCH4III ACNGT 3 cut(s) 361, 627, 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 453, 533
HpyF3I CTNAG 7 cut(s) 56, 78, 83, 397, 574, 600, 643
Hsp92II CATG 3 cut(s) 206, 357, 832
Ksp22I TGATCA 1 cut(s) 858
Kzo9I GATC 3 cut(s) 4, 858, 957
LmnI GCTCC 2 cut(s) 739, 902
Lsp1109I GCAGC 4 cut(s) 188, 401, 488, 523
LweI GCATC 4 cut(s) 217, 239, 463, 914
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 638, 748
MalI GATC 3 cut(s) 6, 860, 959
MboI GATC 3 cut(s) 4, 858, 957
MboII GAAGA 1 cut(s) 928
MhlI GDGCHC 3 cut(s) 84, 510, 583
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 6 cut(s) 126, 686, 728, 761, 967, 982
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 3 cut(s) 635, 705, 780
Mox20I TGGCCA 1 cut(s) 430
Mph1103I ATGCAT 1 cut(s) 232
MscI TGGCCA 1 cut(s) 430
MseI TTAA 3 cut(s) 261, 458, 680
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 430
MspCI CTTAAG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 398, 453, 533
NdeII GATC 3 cut(s) 4, 858, 957
NlaIII CATG 3 cut(s) 206, 357, 832
NlaIV GGNNCC 1 cut(s) 735
NmeAIII GCCGAG 1 cut(s) 473
NmuCI GTSAC 2 cut(s) 638, 748
NsiI ATGCAT 1 cut(s) 232
NspV TTCGAA 1 cut(s) 986
PceI AGGCCT 1 cut(s) 546
PfeI GAWTC 5 cut(s) 101, 164, 293, 716, 743
PkrI GCNGC 5 cut(s) 178, 192, 391, 478, 538
PleI GAGTC 3 cut(s) 635, 704, 780
PpsI GAGTC 3 cut(s) 635, 704, 780
PsiI TTATAA 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 1 cut(s) 419
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 261, 458, 680
SatI GCNGC 5 cut(s) 177, 191, 390, 477, 537
Sau3AI GATC 3 cut(s) 4, 858, 957
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 3 cut(s) 635, 705, 780
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 3 cut(s) 84, 510, 583
SfaNI GCATC 4 cut(s) 217, 239, 463, 914
SfcI CTRYAG 2 cut(s) 809, 865
SfuI TTCGAA 1 cut(s) 986
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 118, 260
SmoI CTYRAG 2 cut(s) 118, 260
Sse9I AATT 6 cut(s) 126, 686, 728, 761, 967, 982
SseBI AGGCCT 1 cut(s) 546
SsiI CCGC 2 cut(s) 190, 414
SspI AATATT 2 cut(s) 520, 995
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 3 cut(s) 361, 627, 813
TaqI TCGA 1 cut(s) 986
TaqII GACCGA 1 cut(s) 135
TasI AATT 6 cut(s) 126, 686, 728, 761, 967, 982
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 5 cut(s) 101, 164, 293, 716, 743
Tru1I TTAA 3 cut(s) 261, 458, 680
Tru9I TTAA 3 cut(s) 261, 458, 680
TscAI CASTG 3 cut(s) 364, 608, 946
TseFI GTSAC 2 cut(s) 638, 748
TseI GCWGC 4 cut(s) 176, 389, 476, 536
Tsp45I GTSAC 2 cut(s) 638, 748
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 3 cut(s) 364, 608, 946
Vha464I CTTAAG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 761, 982
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.