Rorug02G0123500

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002583
Physical Location & Seq
Reverse (-)
10622325 .. 10626960
4636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0123500.1

Sequence Viewer

Length: 1218 bp
ATGGTGCTCGAGGCGACAATGATCTGCATTGATAATTCGGAGTGGATGCGGAACGGCGACTACGCTCCCTCGAGATTTCAAGCTCAGGCCGACGCCGTCAATCTGATTTGTGGAGCTAAAACCCAGTCTAATCCGGAGAATACAGTAGGAGTTCTCACCATGGCAGGAAAAGGTGTTCGCGTTTTGGTAACTCCTACTAGTGATCTTGGCAAGATTTTGGCTTGCATGCACGGTTTAGAAATAGGTGGTGAGATGAACCTGGCTGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAGCAACAAAGGATTATAGTCTTTGCTGGAAGTGTTGTTAAACATGAAAAGAAGACTTTGGAGATGATTGGAAGAAAGTTAAAGAAGAACAGTGTAGCCCTCGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTCAGAGAAGCTAGAAGCGCTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTCCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACCGGAGATGGAGAAGGTGGGAGTGGTTTTGCAGCAGCAGCAGCAGCTGCTGCAGCTGGAGGTGTCTCTGGTTTTGATTTCGGTGTGGATCCAAACCTGGATCCTGAACTTGCCCTTGCTCTTAGAGTATCAATGGAGGAGGAGAGGGCCAGACAAGAAGCAGCTGCTAAAAAGGCTGCTGAGGATTCTTCCAAACAGGAGAAAGGAGGGGAAGAACAATCCAGCTCACAAGATGCAACTATGACAGAGCGTGCCAGTGCTGTAACTTCTGAAGCTGAGAATAAGAGTGTTGATTTCATGGATGATGACAACGCTCTGCTACAGCAGGCCCTTGCGATGTCGATGGATGAGCCTGCCTCCAGCCATGATATGCGAGACACTGACATGTCTGAGGCAGTTGCAGATGATCCCGAGTTGGCTCTAGCTCTTCAAATGTCTGTGCAGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGCTGATCAGTCTTTCGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTAAGAGACTTGCTTGCTTCTATGCAAAACCAGTCAGAGCCTGAACAAAAGAAGAATGAAGAGAACAAGCCAACAAATGAGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

405

Amino Acids

43.13

Weight (kDa)

4.54

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 6 - 115 2e-32 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 49
AclWI GGATC 6 cut(s) 653, 665, 666, 678, 971, 1115
AcuI CTGAAG 2 cut(s) 861, 1110
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 549, 559
AfeI AGCGCT 1 cut(s) 471
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 2 cut(s) 80, 1001
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 3 cut(s) 258, 666, 1102
AjuI GAANNNNNNNTTGG 4 cut(s) 523, 555, 1108, 1140
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 9 cut(s) 83, 116, 463, 617, 626, 734, 795, 845, 995
AluI AGCT 9 cut(s) 83, 116, 463, 617, 626, 734, 795, 845, 995
Alw21I GWGCWC 2 cut(s) 9, 538
Alw26I GTCTC 3 cut(s) 640, 939, 1128
AlwI GGATC 6 cut(s) 653, 665, 666, 678, 971, 1115
AlwNI CAGNNNCTG 3 cut(s) 617, 620, 1169
Ama87I CYCGRG 3 cut(s) 8, 70, 980
Aor13HI TCCGGA 1 cut(s) 133
Aor51HI AGCGCT 1 cut(s) 471
AoxI GGCC 4 cut(s) 87, 288, 717, 897
AseI ATTAAT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 4 cut(s) 289, 527, 717, 898
AsuHPI GGTGA 5 cut(s) 148, 260, 446, 562, 1031
AsuNHI GCTAGC 1 cut(s) 1034
AvaI CYCGRG 3 cut(s) 8, 70, 980
AvaII GGWCC 1 cut(s) 527
BamHI GGATCC 2 cut(s) 658, 670
BbsI GAAGAC 2 cut(s) 374, 1074
Bbv12I GWGCWC 2 cut(s) 9, 538
BbvCI CCTCAGC 1 cut(s) 750
BccI CCATC 2 cut(s) 572, 907
BceAI ACGGC 2 cut(s) 70, 80
BciT130I CCWGG 3 cut(s) 260, 668, 1104
BclI TGATCA 1 cut(s) 1066
BcoDI GTCTC 3 cut(s) 640, 939, 1128
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 4 cut(s) 198, 464, 992, 1035
BfmI CTRYAG 2 cut(s) 621, 890
BfoI RGCGCY 1 cut(s) 473
Bme1390I CCNGG 3 cut(s) 260, 668, 1104
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 3 cut(s) 8, 70, 980
BmgT120I GGNCC 4 cut(s) 289, 527, 717, 898
BmiI GGNNCC 2 cut(s) 660, 672
BmrFI CCNGG 3 cut(s) 260, 668, 1104
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 36, 793
BmtI GCTAGC 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 374, 1074
BplI GAGNNNNNCTC 2 cut(s) 911, 943
BpmI CTGGAG 2 cut(s) 648, 913
Bpu10I CCTNAGC 2 cut(s) 84, 750
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 159, 1103
BsaWI WCCGGW 2 cut(s) 133, 572
Bse1I ACTGG 3 cut(s) 124, 825, 1159
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 3 cut(s) 260, 668, 1104
BseDI CCNNGG 2 cut(s) 159, 1103
BseGI GGATG 3 cut(s) 51, 877, 922
BseMII CTCAG 4 cut(s) 98, 741, 837, 951
BseNI ACTGG 3 cut(s) 124, 825, 1159
BseRI GAGGAG 2 cut(s) 722, 725
BsgI GTGCAG 1 cut(s) 1031
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 4 cut(s) 89, 290, 719, 899
BsiHKAI GWGCWC 2 cut(s) 9, 538
BsiHKCI CYCGRG 3 cut(s) 8, 70, 980
BsiSI CCGG 3 cut(s) 134, 521, 573
BsmAI GTCTC 3 cut(s) 640, 939, 1128
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 4 cut(s) 89, 290, 719, 899
BsoBI CYCGRG 3 cut(s) 8, 70, 980
Bsp1286I GDGCHC 2 cut(s) 9, 538
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 49
BspANI GGCC 4 cut(s) 89, 290, 719, 899
BspCNI CTCAG 4 cut(s) 97, 742, 838, 952
BspEI TCCGGA 1 cut(s) 133
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 660, 672
BspMAI CTGCAG 1 cut(s) 625
BspOI GCTAGC 1 cut(s) 1038
BspPI GGATC 6 cut(s) 653, 665, 666, 678, 971, 1115
BspQI GCTCTTC 1 cut(s) 1002
BsrI ACTGG 3 cut(s) 124, 825, 1159
BssECI CCNNGG 2 cut(s) 159, 1103
BssMI GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 3 cut(s) 260, 668, 1104
Bst4CI ACNGT 3 cut(s) 145, 233, 407
Bst6I CTCTTC 2 cut(s) 1002, 1182
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 2 cut(s) 617, 620
BstC8I GCNNGC 8 cut(s) 223, 227, 268, 822, 897, 924, 1036, 1143
BstDEI CTNAG 5 cut(s) 84, 692, 750, 846, 960
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 51, 877, 922
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 7 cut(s) 24, 205, 661, 673, 979, 1069, 1123
BstMAI GTCTC 3 cut(s) 640, 939, 1128
BstMBI GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
BstNI CCWGG 3 cut(s) 260, 668, 1104
BstNSI RCATGY 2 cut(s) 229, 958
BstSCI CCNGG 3 cut(s) 258, 666, 1102
BstSFI CTRYAG 2 cut(s) 621, 890
BstUI CGCG 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 374, 1074
BstX2I RGATCY 2 cut(s) 658, 670
BstYI RGATCY 2 cut(s) 658, 670
BsuRI GGCC 4 cut(s) 89, 290, 719, 899
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 2 cut(s) 284, 920
BtsCI GGATG 3 cut(s) 51, 877, 922
BtsIMutI CAGTG 3 cut(s) 412, 832, 948
Cac8I GCNNGC 8 cut(s) 223, 227, 268, 822, 897, 924, 1036, 1143
CaiI CAGNNNCTG 3 cut(s) 617, 620, 1169
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 4 cut(s) 289, 527, 717, 898
CseI GACGC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 548, 558
CviAII CATG 7 cut(s) 160, 226, 359, 515, 868, 935, 955
CviQI GTAC 2 cut(s) 548, 558
DdeI CTNAG 5 cut(s) 84, 692, 750, 846, 960
DpnI GATC 7 cut(s) 23, 204, 660, 672, 978, 1068, 1122
DpnII GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
Eam1104I CTCTTC 2 cut(s) 1002, 1182
EarI CTCTTC 2 cut(s) 1002, 1182
Eco130I CCWWGG 1 cut(s) 159
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 527
Eco47III AGCGCT 1 cut(s) 471
Eco57I CTGAAG 2 cut(s) 861, 1110
Eco88I CYCGRG 3 cut(s) 8, 70, 980
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 3 cut(s) 258, 666, 1102
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 7 cut(s) 159, 225, 358, 514, 867, 934, 954
FbaI TGATCA 1 cut(s) 1066
FokI GGATG 3 cut(s) 58, 884, 929
FspBI CTAG 4 cut(s) 198, 464, 992, 1035
GlaI GCGC 1 cut(s) 471
GsuI CTGGAG 2 cut(s) 648, 913
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 4 cut(s) 89, 290, 719, 899
HapII CCGG 3 cut(s) 134, 521, 573
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HinfI GANTC 2 cut(s) 755, 1028
HpaII CCGG 3 cut(s) 134, 521, 573
HphI GGTGA 5 cut(s) 148, 260, 446, 562, 1031
Hpy166II GTNNAC 3 cut(s) 487, 560, 1111
Hpy188I TCNGA 7 cut(s) 40, 105, 457, 544, 841, 961, 1165
Hpy188III TCNNGA 4 cut(s) 72, 134, 674, 980
Hpy8I GTNNAC 3 cut(s) 487, 560, 1111
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 578, 1010, 1134
HpyCH4III ACNGT 3 cut(s) 145, 233, 407
HpyCH4V TGCA 9 cut(s) 27, 225, 229, 602, 623, 806, 971, 1012, 1153
HpyF3I CTNAG 5 cut(s) 84, 692, 750, 846, 960
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
HspAI GCGC 1 cut(s) 470
Kpn2I TCCGGA 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 1066
Kzo9I GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 2 cut(s) 70, 113
LweI GCATC 2 cut(s) 36, 793
MaeI CTAG 4 cut(s) 198, 464, 992, 1035
MaeIII GTNAC 2 cut(s) 187, 832
MalI GATC 7 cut(s) 23, 204, 660, 672, 978, 1068, 1122
MboI GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 2 cut(s) 658, 670
MhlI GDGCHC 2 cut(s) 9, 538
MluCI AATT 4 cut(s) 34, 284, 427, 1055
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 3 cut(s) 354, 395, 426
MslI CAYNNNNRTG 2 cut(s) 275, 953
MspA1I CMGCKG 3 cut(s) 617, 626, 734
MspI CCGG 3 cut(s) 134, 521, 573
MspR9I CCNGG 3 cut(s) 260, 668, 1104
MunI CAATTG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 3 cut(s) 260, 668, 1104
MvnI CGCG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 159
NdeII GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
NheI GCTAGC 1 cut(s) 1034
NlaIII CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
NlaIV GGNNCC 2 cut(s) 660, 672
NspI RCATGY 2 cut(s) 229, 958
PaeI GCATGC 1 cut(s) 229
PaeR7I CTCGAG 2 cut(s) 8, 70
PciI ACATGT 1 cut(s) 954
PciSI GCTCTTC 1 cut(s) 1002
PctI GAATGC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 2 cut(s) 755, 1028
PflFI GACNNNGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 954
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 258, 666, 1102
PspGI CCWGG 3 cut(s) 258, 666, 1102
PspN4I GGNNCC 2 cut(s) 660, 672
PspPI GGNCC 4 cut(s) 289, 527, 717, 898
PspXI VCTCGAGB 1 cut(s) 8
PsrI GAACNNNNNNTAC 2 cut(s) 44, 76
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 3 cut(s) 617, 620, 1169
PsuI RGATCY 2 cut(s) 658, 670
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 3 cut(s) 617, 626, 734
RsaI GTAC 2 cut(s) 549, 559
RsaNI GTAC 2 cut(s) 548, 558
RseI CAYNNNNRTG 2 cut(s) 275, 953
SapI GCTCTTC 1 cut(s) 1002
SaqAI TTAA 3 cut(s) 354, 395, 426
Sau3AI GATC 7 cut(s) 21, 202, 658, 670, 976, 1066, 1120
Sau96I GGNCC 4 cut(s) 289, 527, 717, 898
ScrFI CCNGG 3 cut(s) 260, 668, 1104
SduI GDGCHC 2 cut(s) 9, 538
SfaNI GCATC 2 cut(s) 36, 793
SfcI CTRYAG 2 cut(s) 621, 890
Sfr274I CTCGAG 2 cut(s) 8, 70
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 2 cut(s) 8, 70
SmiMI CAYNNNNRTG 2 cut(s) 275, 953
SmlI CTYRAG 2 cut(s) 8, 70
SmoI CTYRAG 2 cut(s) 8, 70
SpeI ACTAGT 1 cut(s) 197
SphI GCATGC 1 cut(s) 229
Sse9I AATT 4 cut(s) 34, 284, 427, 1055
SsiI CCGC 1 cut(s) 49
SspMI CTAG 4 cut(s) 198, 464, 992, 1035
StyD4I CCNGG 3 cut(s) 258, 666, 1102
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 145, 233, 407
TaqI TCGA 4 cut(s) 9, 71, 417, 911
TasI AATT 4 cut(s) 34, 284, 427, 1055
TatI WGTACW 2 cut(s) 547, 557
TfiI GAWTC 2 cut(s) 755, 1028
Tru1I TTAA 3 cut(s) 354, 395, 426
Tru9I TTAA 3 cut(s) 354, 395, 426
TscAI CASTG 3 cut(s) 412, 832, 955
TspDTI ATGAA 6 cut(s) 269, 375, 459, 503, 856, 1200
TspRI CASTG 3 cut(s) 412, 832, 955
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 527
VspI ATTAAT 1 cut(s) 426
XceI RCATGY 2 cut(s) 229, 958
XhoI CTCGAG 2 cut(s) 8, 70
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 4 cut(s) 198, 464, 992, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.