RLG00000017363

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002583
Physical Location & Seq
Forward (+)
15674056 .. 15678010
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017363

Sequence Viewer

Length: 987 bp
ATGGAGTACATTACCCACAAGCTTTTCTATATTGTCTTGCTTTGCCTCTTTTTCCTAAGCCCTCCTTTTGTTTCCTCTCAGCTCAATTATAAGTTCTATGATTCCTCTTGTCCCAACTTGAGCAAGATTGTTCAACAAGGCGTTCGGTCTGCTATTGCAAATGATTCTAGGATTGCAGCCTCACTCTTGCGGCTTCACTTCCATGATTGCTTTGTTAATGGATGTGACGCATCTATACTTCTTGACGATACTAGCACTGTTAAGGGGGAGAAAAATGCTTCGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATAAAGTTAGCACTGGAGGAAGCTTGCCCATGCACTGTTTCCTGTACTGACATACTCACTCTTGCTGCAACCTCAGCTGTTTATTTTAGCGGAGGGCCATATTGGCCTGTAGTACTGGGTCGCCGAGATGGCACAACAGCAAGTGAAGATGCAGCTAATGACGACTTGCCATCACCTTTTGAGCCCTTAGAAAACATCACTGCAAAGTTTTCAGCAAAAGGCCTTAATTTAAGGGATGTTGTTGTCCTCTCAGGTGCACACACCATCGGCTTTGCTCAGTGCTTCACGTTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGGTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCACGCTGATTCTGATACCAAATTGGCTCCACTTGATCCTGTTACTTCCAACAGGTTTGACAACGTTTACTTCAAAAAACTGGTGAACAAATCTGGGCTTCTACAGTCAGACCAGCTCCTTATGGGGGACAGTAGGACTTCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGATGAAGGTGGCAAATATTGGTGTGCTTACTGGACAAAATGGACAAATTAGGAAGAATTGTAGGATGGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

36.03

Weight (kDa)

7.5

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 290 8.4e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AciI CCGC 2 cut(s) 190, 414
AclI AACGTT 1 cut(s) 771
AclWI GGATC 1 cut(s) 737
AfaI GTAC 3 cut(s) 8, 370, 438
AfiI CCNNNNNNNGG 1 cut(s) 832
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 6 cut(s) 134, 616, 631, 781, 852, 889
AluBI AGCT 7 cut(s) 22, 82, 347, 401, 479, 823, 864
AluI AGCT 7 cut(s) 22, 82, 347, 401, 479, 823, 864
Alw21I GWGCWC 1 cut(s) 583
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 3 cut(s) 419, 428, 544
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 3 cut(s) 176, 389, 476
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 2 cut(s) 489, 802
AvaI CYCGRG 1 cut(s) 643
BaeGI GKGCMC 2 cut(s) 583, 704
BanII GRGCYC 1 cut(s) 510
BarI GAAGNNNNNNTAC 2 cut(s) 832, 864
Bbv12I GWGCWC 1 cut(s) 583
BbvCI CCTCAGC 1 cut(s) 397
BbvI GCAGC 3 cut(s) 188, 376, 488
BccI CCATC 4 cut(s) 446, 502, 596, 970
BcnI CCSGG 1 cut(s) 659
BfaI CTAG 2 cut(s) 168, 252
BfmI CTRYAG 3 cut(s) 432, 809, 865
BglI GCCNNNNNGGC 2 cut(s) 427, 453
BisI GCNGC 4 cut(s) 177, 191, 390, 477
BlsI GCNGC 4 cut(s) 178, 192, 391, 478
BmcAI AGTACT 1 cut(s) 438
Bme1390I CCNGG 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 643
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 1 cut(s) 659
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 3 cut(s) 239, 463, 914
BmuI ACTGGG 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 359
Bpu10I CCTNAGC 2 cut(s) 56, 397
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 659
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse1I ACTGG 4 cut(s) 342, 444, 792, 946
BseGI GGATG 3 cut(s) 227, 565, 981
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMII CTCAG 4 cut(s) 92, 411, 588, 614
BseNI ACTGG 4 cut(s) 342, 444, 792, 946
BseSI GKGCMC 2 cut(s) 583, 704
BseXI GCAGC 3 cut(s) 188, 376, 488
BshFI GGCC 3 cut(s) 421, 430, 546
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 643
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 2 cut(s) 96, 848
BslI CCNNNNNNNGG 1 cut(s) 832
BsmFI GGGAC 2 cut(s) 96, 848
BsnI GGCC 3 cut(s) 421, 430, 546
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 3 cut(s) 510, 583, 704
Bsp143I GATC 1 cut(s) 742
BspACI CCGC 2 cut(s) 190, 414
BspANI GGCC 3 cut(s) 421, 430, 546
BspCNI CTCAG 4 cut(s) 91, 410, 587, 613
BspLI GGNNCC 1 cut(s) 735
BspPI GGATC 1 cut(s) 737
BsrI ACTGG 4 cut(s) 342, 444, 792, 946
BssMI GATC 1 cut(s) 742
Bst4CI ACNGT 5 cut(s) 259, 361, 627, 813, 839
BstC8I GCNNGC 2 cut(s) 349, 650
BstDEI CTNAG 6 cut(s) 56, 78, 397, 511, 574, 600
BstF5I GGATG 3 cut(s) 227, 565, 981
BstKTI GATC 1 cut(s) 745
BstMBI GATC 1 cut(s) 742
BstMWI GCNNNNNNNGC 3 cut(s) 398, 427, 453
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 3 cut(s) 432, 809, 865
BstSLI GKGCMC 2 cut(s) 583, 704
BstV1I GCAGC 3 cut(s) 188, 376, 488
BsuRI GGCC 3 cut(s) 421, 430, 546
BtsCI GGATG 3 cut(s) 227, 565, 981
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 5 cut(s) 255, 335, 357, 522, 608
Cac8I GCNNGC 2 cut(s) 349, 650
Cfr13I GGNCC 1 cut(s) 419
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 7, 369, 437
CviAII CATG 2 cut(s) 203, 354
CviQI GTAC 3 cut(s) 7, 369, 437
DdeI CTNAG 6 cut(s) 56, 78, 397, 511, 574, 600
DpnI GATC 1 cut(s) 744
DpnII GATC 1 cut(s) 742
Eco147I AGGCCT 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 510
FaeI CATG 2 cut(s) 206, 357
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 2 cut(s) 96, 848
FatI CATG 2 cut(s) 202, 353
Fnu4HI GCNGC 4 cut(s) 177, 191, 390, 477
FokI GGATG 2 cut(s) 234, 572
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 4 cut(s) 177, 191, 390, 477
FspBI CTAG 2 cut(s) 168, 252
GluI GCNGC 4 cut(s) 177, 191, 390, 477
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 3 cut(s) 421, 430, 546
HapII CCGG 1 cut(s) 659
HgaI GACGC 1 cut(s) 236
Hin1II CATG 2 cut(s) 206, 357
HindIII AAGCTT 2 cut(s) 20, 345
HinfI GANTC 5 cut(s) 101, 164, 293, 641, 716
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 489, 802
Hpy166II GTNNAC 3 cut(s) 581, 775, 793
Hpy188I TCNGA 3 cut(s) 302, 721, 817
Hpy188III TCNNGA 2 cut(s) 242, 616
Hpy8I GTNNAC 3 cut(s) 581, 775, 793
HpyAV CCTTC 1 cut(s) 910
HpyCH4III ACNGT 5 cut(s) 259, 361, 627, 813, 839
HpyCH4IV ACGT 3 cut(s) 611, 696, 771
HpyCH4V TGCA 7 cut(s) 158, 176, 357, 392, 476, 527, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 427, 453
HpyF3I CTNAG 6 cut(s) 56, 78, 397, 511, 574, 600
HpySE526I ACGT 3 cut(s) 611, 696, 771
Hsp92II CATG 2 cut(s) 206, 357
Kzo9I GATC 1 cut(s) 742
LmnI GCTCC 3 cut(s) 739, 828, 902
Lsp1109I GCAGC 3 cut(s) 188, 376, 488
LweI GCATC 3 cut(s) 239, 463, 914
MaeI CTAG 2 cut(s) 168, 252
MaeII ACGT 3 cut(s) 611, 696, 771
MaeIII GTNAC 3 cut(s) 224, 638, 748
MalI GATC 1 cut(s) 744
MboI GATC 1 cut(s) 742
MboII GAAGA 3 cut(s) 482, 840, 976
MhlI GDGCHC 3 cut(s) 510, 583, 704
MluCI AATT 6 cut(s) 85, 550, 728, 957, 967, 982
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 780
MseI TTAA 4 cut(s) 216, 261, 549, 554
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 659
MwoI GCNNNNNNNGC 3 cut(s) 398, 427, 453
NciI CCSGG 1 cut(s) 659
NdeII GATC 1 cut(s) 742
NlaIII CATG 2 cut(s) 206, 357
NlaIV GGNNCC 1 cut(s) 735
NmeAIII GCCGAG 1 cut(s) 473
NmuCI GTSAC 2 cut(s) 224, 638
PceI AGGCCT 1 cut(s) 546
PfeI GAWTC 4 cut(s) 101, 164, 293, 716
PkrI GCNGC 4 cut(s) 178, 192, 391, 478
PleI GAGTC 1 cut(s) 635
PpsI GAGTC 1 cut(s) 635
PsiI TTATAA 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 771
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 8, 370, 438
RsaNI GTAC 3 cut(s) 7, 369, 437
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 4 cut(s) 216, 261, 549, 554
SatI GCNGC 4 cut(s) 177, 191, 390, 477
Sau3AI GATC 1 cut(s) 742
Sau96I GGNCC 1 cut(s) 419
ScaI AGTACT 1 cut(s) 438
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 3 cut(s) 510, 583, 704
SfaNI GCATC 3 cut(s) 239, 463, 914
SfcI CTRYAG 3 cut(s) 432, 809, 865
SfiI GGCCNNNNNGGCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 6 cut(s) 85, 550, 728, 957, 967, 982
SseBI AGGCCT 1 cut(s) 546
SsiI CCGC 2 cut(s) 190, 414
SspI AATATT 1 cut(s) 928
SspMI CTAG 2 cut(s) 168, 252
StuI AGGCCT 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 657
TaaI ACNGT 5 cut(s) 259, 361, 627, 813, 839
TaiI ACGT 3 cut(s) 614, 699, 774
TaqII GACCGA 1 cut(s) 135
TasI AATT 6 cut(s) 85, 550, 728, 957, 967, 982
TatI WGTACW 3 cut(s) 6, 368, 436
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 4 cut(s) 101, 164, 293, 716
Tru1I TTAA 4 cut(s) 216, 261, 549, 554
Tru9I TTAA 4 cut(s) 216, 261, 549, 554
TscAI CASTG 5 cut(s) 262, 342, 364, 529, 608
TseFI GTSAC 2 cut(s) 224, 638
TseI GCWGC 3 cut(s) 176, 389, 476
Tsp45I GTSAC 2 cut(s) 224, 638
TspDTI ATGAA 2 cut(s) 324, 929
TspRI CASTG 5 cut(s) 262, 342, 364, 529, 608
VneI GTGCAC 1 cut(s) 579
XspI CTAG 2 cut(s) 168, 252
ZrmI AGTACT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.