MD05G1075100.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002583
Physical Location & Seq
Forward (+)
15957716 .. 15959760
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1075100.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGACTCACAAAATCATCTCCTGCTTCACCATTGCTTTATGCTTGTTCTTGTTTTTGTGTCCTTTTGTTCATATGTATCCCTTTTCTTATACTAGCCAGCTCGATTACAATTTCTACGACAGAGCGTGTCCTCGCTTGTCAATGATTGTCCGGTACAATATTTGGGCAGCTCTCAAGAACGACACCAGGATGGCTGCATCCCTTCTTCGGATGCACTTTCATGATTGTATTGTCAATGGATGTGACGGATCAGTGCTTCTTGATGACACAGATGAATTCAAGGGCGAGAAGAATGCTCCAGCAAATCGCAATTCTCTTCGAGGGTTCGAAGTGATCGACAGTATAAAAGCAGATGTCGAAAAATTCTGCCCATCAACTGTTTCGTGTGCCGATATTTTGACTCTTGCAGCAAGAGAAGCTGTTGTTCTGGCAGGAGGGCCTTTTTGGCCTGTTCCATTGGGCAGAAGAGATGCAACAACAGCAAGTGTGAAGGCAGTTAATGAACAAATACCATCACCTTTTGAGCCTTTAGCGAATATCACTGCCAAGTTCACATCAAAGGGTCTTGACATTAAAGATGTTGTAGTACTCTCAGGTGGACATACCCTAGGGTTTGCTCAATGCTTCACCTTCAAGAGAAGGCTCTTCAACTTCGACGGCTTGGGCAACCCTGACCCAACACTTGATTCTTCGGCCCTATCAAGCTTGAGAAGAATATGTCCAAAGAAAGATGAAGCAAACAGCAATGTTGCTCCTCTTGATTCCACAAATGTCAAATTTGACAATACCTATTACACAAACCTGGTTCAAAACACAGGTCTTCTAGAATCTGATCAGGCATTGGTGAATGATCCAAATACTGCTGCAATGGTGAACTCTTACAGTGGGAACCCATTCCTTTTCAATAACGATTTTGCAGCATCAATGGTGAAGCTTGGTAATGTTGGAGTACTGACTGGGAAAAACGGGCAAATAAGGAAGAAATGCGGATCTGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

334

Amino Acids

36.55

Weight (kDa)

7.49

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 50 - 296 1.2e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 987
AclWI GGATC 3 cut(s) 256, 845, 997
AcsI RAATTY 3 cut(s) 275, 362, 776
AfaI GTAC 3 cut(s) 155, 588, 951
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 5 cut(s) 280, 634, 649, 809, 904
AjnI CCWGG 2 cut(s) 185, 801
AjuI GAANNNNNNNTTGG 2 cut(s) 670, 702
AluBI AGCT 5 cut(s) 100, 170, 419, 705, 934
AluI AGCT 5 cut(s) 100, 170, 419, 705, 934
AlwI GGATC 3 cut(s) 256, 845, 997
AoxI GGCC 3 cut(s) 437, 446, 693
ApeKI GCWGC 5 cut(s) 167, 194, 407, 863, 917
ApoI RAATTY 3 cut(s) 275, 362, 776
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
Asp700I GAANNNNTTC 1 cut(s) 893
AspA2I CCTAGG 1 cut(s) 607
AspS9I GGNCC 2 cut(s) 437, 694
AsuHPI GGTGA 6 cut(s) 19, 507, 619, 856, 883, 940
AsuII TTCGAA 1 cut(s) 327
AvrII CCTAGG 1 cut(s) 607
BbsI GAAGAC 1 cut(s) 812
BbvI GCAGC 5 cut(s) 179, 181, 419, 850, 929
BccI CCATC 3 cut(s) 184, 379, 520
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 2 cut(s) 187, 803
BciVI GTATCC 1 cut(s) 87
BclI TGATCA 1 cut(s) 832
BfaI CTAG 3 cut(s) 93, 608, 824
BfuI GTATCC 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 445
BisI GCNGC 5 cut(s) 168, 195, 408, 864, 918
BlnI CCTAGG 1 cut(s) 607
BlsI GCNGC 5 cut(s) 169, 196, 409, 865, 919
BmcAI AGTACT 2 cut(s) 588, 951
Bme1390I CCNGG 2 cut(s) 187, 803
BmgT120I GGNCC 2 cut(s) 437, 694
BmiI GGNNCC 1 cut(s) 890
BmrFI CCNGG 2 cut(s) 187, 803
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 4 cut(s) 201, 206, 460, 929
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 812
BpmI CTGGAG 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 158, 727
BsaJI CCNNGG 1 cut(s) 607
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 961
Bse3DI GCAATG 3 cut(s) 30, 751, 873
BseBI CCWGG 2 cut(s) 187, 803
BseDI CCNNGG 1 cut(s) 607
BseGI GGATG 4 cut(s) 195, 197, 216, 245
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 3 cut(s) 30, 751, 873
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 1 cut(s) 744
BseXI GCAGC 5 cut(s) 179, 181, 419, 850, 929
BshFI GGCC 3 cut(s) 439, 448, 695
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 207
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 3 cut(s) 439, 448, 695
Bsp119I TTCGAA 1 cut(s) 327
Bsp143I GATC 5 cut(s) 248, 333, 832, 850, 989
BspACI CCGC 1 cut(s) 987
BspANI GGCC 3 cut(s) 439, 448, 695
BspCNI CTCAG 1 cut(s) 605
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 890
BspPI GGATC 3 cut(s) 256, 845, 997
BspQI GCTCTTC 1 cut(s) 650
BspT104I TTCGAA 1 cut(s) 327
BsrDI GCAATG 3 cut(s) 30, 751, 873
BsrI ACTGG 1 cut(s) 961
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 5 cut(s) 248, 333, 832, 850, 989
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 2 cut(s) 187, 803
Bst4CI ACNGT 3 cut(s) 341, 379, 884
Bst6I CTCTTC 3 cut(s) 321, 460, 650
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 592
BstF5I GGATG 4 cut(s) 195, 197, 216, 245
BstKTI GATC 5 cut(s) 251, 336, 835, 853, 992
BstMBI GATC 5 cut(s) 248, 333, 832, 850, 989
BstMWI GCNNNNNNNGC 3 cut(s) 416, 445, 479
BstNI CCWGG 2 cut(s) 187, 803
BstSCI CCNGG 2 cut(s) 185, 801
BstV1I GCAGC 5 cut(s) 179, 181, 419, 850, 929
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 1 cut(s) 989
BstYI RGATCY 1 cut(s) 989
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 3 cut(s) 439, 448, 695
BtsCI GGATG 4 cut(s) 195, 197, 216, 245
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 3 cut(s) 258, 540, 889
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 437, 694
CsiI ACCWGGT 1 cut(s) 801
Csp6I GTAC 3 cut(s) 154, 587, 950
CviAII CATG 1 cut(s) 221
CviQI GTAC 3 cut(s) 154, 587, 950
DdeI CTNAG 1 cut(s) 592
DpnI GATC 5 cut(s) 250, 335, 834, 852, 991
DpnII GATC 5 cut(s) 248, 333, 832, 850, 989
Eam1104I CTCTTC 3 cut(s) 321, 460, 650
EarI CTCTTC 3 cut(s) 321, 460, 650
Eco130I CCWWGG 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 185, 801
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 1 cut(s) 224
FaiI YATR 8 cut(s) 40, 72, 74, 90, 222, 344, 603, 718
FatI CATG 1 cut(s) 220
FauNDI CATATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 5 cut(s) 168, 195, 408, 864, 918
FokI GGATG 4 cut(s) 184, 202, 223, 252
Fsp4HI GCNGC 5 cut(s) 168, 195, 408, 864, 918
FspBI CTAG 3 cut(s) 93, 608, 824
GluI GCNGC 5 cut(s) 168, 195, 408, 864, 918
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 3 cut(s) 439, 448, 695
HapII CCGG 1 cut(s) 151
Hin1II CATG 1 cut(s) 224
HindIII AAGCTT 2 cut(s) 703, 932
HinfI GANTC 5 cut(s) 4, 400, 686, 761, 827
HpaII CCGG 1 cut(s) 151
HphI GGTGA 6 cut(s) 19, 507, 619, 856, 883, 940
Hpy166II GTNNAC 4 cut(s) 552, 599, 874, 997
Hpy188I TCNGA 2 cut(s) 210, 832
Hpy188III TCNNGA 7 cut(s) 175, 221, 260, 566, 634, 758, 824
Hpy8I GTNNAC 4 cut(s) 552, 599, 874, 997
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 4 cut(s) 212, 484, 633, 640
HpyCH4III ACNGT 3 cut(s) 341, 379, 884
HpyCH4V TGCA 6 cut(s) 197, 214, 407, 473, 866, 917
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 445, 479
HpyF3I CTNAG 1 cut(s) 592
Hsp92II CATG 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 5 cut(s) 248, 333, 832, 850, 989
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 2 cut(s) 301, 757
Lsp1109I GCAGC 5 cut(s) 179, 181, 419, 850, 929
LweI GCATC 4 cut(s) 201, 206, 460, 929
MabI ACCWGGT 1 cut(s) 801
MaeI CTAG 3 cut(s) 93, 608, 824
MaeIII GTNAC 1 cut(s) 242
MalI GATC 5 cut(s) 250, 335, 834, 852, 991
MboI GATC 5 cut(s) 248, 333, 832, 850, 989
MboII GAAGA 9 cut(s) 197, 301, 308, 477, 637, 681, 723, 812, 991
MflI RGATCY 1 cut(s) 989
MluCI AATT 5 cut(s) 109, 275, 310, 362, 776
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 925
MnlI CCTC 4 cut(s) 141, 314, 428, 765
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 2 cut(s) 498, 573
MslI CAYNNNNRTG 2 cut(s) 188, 219
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 187, 803
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 2 cut(s) 187, 803
MwoI GCNNNNNNNGC 3 cut(s) 416, 445, 479
NdeI CATATG 1 cut(s) 72
NdeII GATC 5 cut(s) 248, 333, 832, 850, 989
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 890
NmuCI GTSAC 1 cut(s) 242
NspV TTCGAA 1 cut(s) 327
PagI TCATGA 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 3 cut(s) 686, 761, 827
PkrI GCNGC 5 cut(s) 169, 196, 409, 865, 919
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 185, 801
PspGI CCWGG 2 cut(s) 185, 801
PspN4I GGNNCC 1 cut(s) 890
PspPI GGNCC 2 cut(s) 437, 694
PsuI RGATCY 1 cut(s) 989
RsaI GTAC 3 cut(s) 155, 588, 951
RsaNI GTAC 3 cut(s) 154, 587, 950
RseI CAYNNNNRTG 2 cut(s) 188, 219
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 498, 573
SatI GCNGC 5 cut(s) 168, 195, 408, 864, 918
Sau3AI GATC 5 cut(s) 248, 333, 832, 850, 989
Sau96I GGNCC 2 cut(s) 437, 694
ScaI AGTACT 2 cut(s) 588, 951
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 187, 803
SexAI ACCWGGT 1 cut(s) 801
SfaNI GCATC 4 cut(s) 201, 206, 460, 929
SfiI GGCCNNNNNGGCC 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 188, 219
SmlI CTYRAG 2 cut(s) 173, 706
SmoI CTYRAG 2 cut(s) 173, 706
Sse9I AATT 5 cut(s) 109, 275, 310, 362, 776
SsiI CCGC 1 cut(s) 987
SspI AATATT 1 cut(s) 160
SspMI CTAG 3 cut(s) 93, 608, 824
StyD4I CCNGG 2 cut(s) 185, 801
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 3 cut(s) 341, 379, 884
TaqI TCGA 6 cut(s) 102, 319, 327, 336, 357, 654
TasI AATT 5 cut(s) 109, 275, 310, 362, 776
TatI WGTACW 2 cut(s) 586, 949
TfiI GAWTC 3 cut(s) 686, 761, 827
Tru1I TTAA 2 cut(s) 498, 573
Tru9I TTAA 2 cut(s) 498, 573
TscAI CASTG 3 cut(s) 258, 547, 889
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 5 cut(s) 167, 194, 407, 863, 917
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 5 cut(s) 59, 209, 288, 516, 747
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 3 cut(s) 258, 547, 889
XapI RAATTY 3 cut(s) 275, 362, 776
XbaI TCTAGA 1 cut(s) 823
XmaJI CCTAGG 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 3 cut(s) 93, 608, 824
ZrmI AGTACT 2 cut(s) 588, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.