FvH4_1g15551

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002583
Physical Location & Seq
Forward (+)
8832073 .. 8833906
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15551.t1

Sequence Viewer

Length: 993 bp
ATGGAGCATACTTGCTATACACTTCTTACTTGTGTTACCTTGTTTTGCTTCTTGTTCATAAGCCCTCCTCTTGTATCCTCTCAGCAGCTTAATTATAAGTTCTATGATTCCTCTTGTCCCAACTTGACCAAGATTGTTCAACAAGGCGTTTGGTCAGCTATCGCCAACGATTCTAGGATTGCAGCCTCACTCTTGCGGCTTCACTTCCATGACTGCTTTGTTAATGGATGTGATGCATCTGTATTACTTGATGATACTAGCACTCTTCAAGGGGAGAAAAATGCATTTCCCAACAAAGATTCAGCCAGAGGCTTTGAGGTGATCGACAAAATCAAGTCAAATTTGGAGGAAGCTTGCCCATCCACCGTTTCTTGTACTGATATTCTCACCCTTGCAGCAACTTCAGCTGTTTACTTTAGCGGAGGGCCATATTGGCCTGTAGCCCTGGGTCGCCGGGACGGCACTACCGCAAGTAAAGATGCAGCTAACAATGATCTGCCATCACCATTTGAGCCCTTGGAGAACATCACAGCAAAGTTCACGGCAAAAGGCCTTGATATGAAGGATGTTGTTGTTCTCTCAGGTGCACACACTATTGGCTTTGCTCAATGCTTCACATTCAAGCCAAGACTGTTCAACTTTGATGACTCTGGCAAACCAGACCCGACATTAGACACATCACTTCTTACAAATCTACAAAGCGTTTGCCCAAATCAAGCTGATTCTGACACCAAACTGGCTCCATTGGATCCTGTCACTTCAACCAAGTTTGATAATGTTTACTTCAAGAGACTGGTGAACAATTCTGGGCTTCTCCAATCGGACCAGGTTCTTATGGGAGACAATAGGACTGCATCAATGGTCATCAGCTATAGCAGATTTCCTTATCTGTTTAACAAGGACTTTGGAGCATCCATGGTGAAGATGGCAAATATAGGTGTGCTCACCGGACAAAGTGGTCAAATCAGGAAGAATTGTAGGGTGGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

331

Amino Acids

36.09

Weight (kDa)

5.82

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 292 1.1e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AasI GACNNNNNNGTC 1 cut(s) 957
AciI CCGC 3 cut(s) 196, 420, 468
AclWI GGATC 2 cut(s) 743, 756
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 6 cut(s) 140, 269, 622, 637, 762, 787
AjnI CCWGG 2 cut(s) 444, 825
AluBI AGCT 7 cut(s) 88, 158, 353, 407, 485, 719, 870
AluI AGCT 7 cut(s) 88, 158, 353, 407, 485, 719, 870
Alw21I GWGCWC 2 cut(s) 589, 945
Alw26I GTCTC 2 cut(s) 784, 834
Alw44I GTGCAC 1 cut(s) 585
AlwI GGATC 2 cut(s) 743, 756
AoxI GGCC 3 cut(s) 425, 434, 550
ApaLI GTGCAC 1 cut(s) 585
ApeKI GCWGC 4 cut(s) 85, 182, 395, 482
ApoI RAATTY 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 425, 823
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 6 cut(s) 331, 379, 495, 808, 931, 937
AvaII GGWCC 1 cut(s) 823
BaeGI GKGCMC 1 cut(s) 589
BamHI GGATCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 589, 945
BbvI GCAGC 4 cut(s) 97, 194, 407, 494
BccI CCATC 3 cut(s) 367, 508, 919
BceAI ACGGC 2 cut(s) 475, 558
BciT130I CCWGG 2 cut(s) 446, 827
BciVI GTATCC 1 cut(s) 85
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 784, 834
BfaI CTAG 3 cut(s) 174, 258, 991
BfmI CTRYAG 2 cut(s) 438, 871
BfuI GTATCC 1 cut(s) 85
BglI GCCNNNNNGGC 2 cut(s) 433, 459
BisI GCNGC 5 cut(s) 86, 183, 197, 396, 483
BlsI GCNGC 5 cut(s) 87, 184, 198, 397, 484
Bme1390I CCNGG 3 cut(s) 446, 455, 827
Bme18I GGWCC 1 cut(s) 823
BmgT120I GGNCC 2 cut(s) 425, 823
BmiI GGNNCC 2 cut(s) 741, 750
BmrFI CCNGG 3 cut(s) 446, 455, 827
BmsI GCATC 5 cut(s) 223, 245, 469, 863, 920
BpuMI CCSGG 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 444, 445, 516, 915
BsaWI WCCGGW 1 cut(s) 947
Bse1I ACTGG 2 cut(s) 741, 798
BseBI CCWGG 2 cut(s) 446, 827
BseDI CCNNGG 4 cut(s) 444, 445, 516, 915
BseGI GGATG 4 cut(s) 233, 359, 571, 911
BseMII CTCAG 2 cut(s) 95, 594
BseNI ACTGG 2 cut(s) 741, 798
BseRI GAGGAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 4 cut(s) 97, 194, 407, 494
BshFI GGCC 3 cut(s) 427, 436, 552
BsiHKAI GWGCWC 2 cut(s) 589, 945
BsiSI CCGG 2 cut(s) 454, 948
BslFI GGGAC 2 cut(s) 102, 470
BsmAI GTCTC 2 cut(s) 784, 834
BsmFI GGGAC 2 cut(s) 102, 470
BsnI GGCC 3 cut(s) 427, 436, 552
Bsp1286I GDGCHC 3 cut(s) 516, 589, 945
Bsp143I GATC 3 cut(s) 321, 493, 748
Bsp19I CCATGG 1 cut(s) 915
BspACI CCGC 3 cut(s) 196, 420, 468
BspANI GGCC 3 cut(s) 427, 436, 552
BspCNI CTCAG 2 cut(s) 94, 593
BspLI GGNNCC 2 cut(s) 741, 750
BspPI GGATC 2 cut(s) 743, 756
BsrI ACTGG 2 cut(s) 741, 798
BssECI CCNNGG 4 cut(s) 444, 445, 516, 915
BssMI GATC 3 cut(s) 321, 493, 748
BssT1I CCWWGG 2 cut(s) 516, 915
Bst2UI CCWGG 2 cut(s) 446, 827
Bst4CI ACNGT 2 cut(s) 367, 633
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 81, 580
BstDSI CCRYGG 1 cut(s) 915
BstF5I GGATG 4 cut(s) 233, 359, 571, 911
BstKTI GATC 3 cut(s) 324, 496, 751
BstMAI GTCTC 2 cut(s) 784, 834
BstMBI GATC 3 cut(s) 321, 493, 748
BstMWI GCNNNNNNNGC 3 cut(s) 404, 433, 459
BstNI CCWGG 2 cut(s) 446, 827
BstSCI CCNGG 3 cut(s) 444, 453, 825
BstSFI CTRYAG 2 cut(s) 438, 871
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 4 cut(s) 97, 194, 407, 494
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 3 cut(s) 427, 436, 552
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 4 cut(s) 233, 359, 571, 911
Cac8I GCNNGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 425, 823
CsiI ACCWGGT 1 cut(s) 825
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 209, 916
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 2 cut(s) 81, 580
DpnI GATC 3 cut(s) 323, 495, 750
DpnII GATC 3 cut(s) 321, 493, 748
DrdI GACNNNNNNGTC 1 cut(s) 957
DseDI GACNNNNNNGTC 1 cut(s) 957
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 2 cut(s) 516, 915
Eco147I AGGCCT 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 444, 825
EcoT14I CCWWGG 2 cut(s) 516, 915
EcoT22I ATGCAT 2 cut(s) 238, 286
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 2 cut(s) 516, 915
FaeI CATG 2 cut(s) 212, 919
FaqI GGGAC 2 cut(s) 102, 470
FatI CATG 2 cut(s) 208, 915
Fnu4HI GCNGC 5 cut(s) 86, 183, 197, 396, 483
FokI GGATG 4 cut(s) 240, 346, 578, 898
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 5 cut(s) 86, 183, 197, 396, 483
FspBI CTAG 3 cut(s) 174, 258, 991
GluI GCNGC 5 cut(s) 86, 183, 197, 396, 483
HaeIII GGCC 3 cut(s) 427, 436, 552
HapII CCGG 2 cut(s) 454, 948
Hin1II CATG 2 cut(s) 212, 919
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 5 cut(s) 107, 170, 299, 647, 722
HpaII CCGG 2 cut(s) 454, 948
HphI GGTGA 6 cut(s) 331, 379, 495, 808, 931, 937
Hpy166II GTNNAC 6 cut(s) 412, 540, 587, 781, 799, 988
Hpy188I TCNGA 2 cut(s) 727, 823
Hpy188III TCNNGA 2 cut(s) 787, 967
Hpy8I GTNNAC 6 cut(s) 412, 540, 587, 781, 799, 988
HpyAV CCTTC 1 cut(s) 556
HpyCH4III ACNGT 2 cut(s) 367, 633
HpyCH4V TGCA 7 cut(s) 182, 236, 284, 395, 482, 587, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 433, 459
HpyF3I CTNAG 2 cut(s) 81, 580
Hsp92II CATG 2 cut(s) 212, 919
Kzo9I GATC 3 cut(s) 321, 493, 748
LmnI GCTCC 3 cut(s) 4, 745, 908
Lsp1109I GCAGC 4 cut(s) 97, 194, 407, 494
LweI GCATC 5 cut(s) 223, 245, 469, 863, 920
MabI ACCWGGT 1 cut(s) 825
MaeI CTAG 3 cut(s) 174, 258, 991
MaeIII GTNAC 2 cut(s) 34, 754
MalI GATC 3 cut(s) 323, 495, 750
MboI GATC 3 cut(s) 321, 493, 748
MboII GAAGA 3 cut(s) 257, 934, 982
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 3 cut(s) 516, 589, 945
MluCI AATT 4 cut(s) 91, 340, 802, 973
MlyI GAGTC 1 cut(s) 641
MnlI CCTC 9 cut(s) 75, 78, 88, 121, 196, 302, 310, 340, 416
Mph1103I ATGCAT 2 cut(s) 238, 286
MseI TTAA 3 cut(s) 90, 222, 894
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 454, 948
MspR9I CCNGG 3 cut(s) 446, 455, 827
MvaI CCWGG 2 cut(s) 446, 827
MwoI GCNNNNNNNGC 3 cut(s) 404, 433, 459
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 1 cut(s) 915
NdeII GATC 3 cut(s) 321, 493, 748
NlaIII CATG 2 cut(s) 212, 919
NlaIV GGNNCC 2 cut(s) 741, 750
NmuCI GTSAC 1 cut(s) 754
NsiI ATGCAT 2 cut(s) 238, 286
PasI CCCWGGG 1 cut(s) 445
PceI AGGCCT 1 cut(s) 552
PfeI GAWTC 4 cut(s) 107, 170, 299, 722
PkrI GCNGC 5 cut(s) 87, 184, 198, 397, 484
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 444, 825
PspGI CCWGG 2 cut(s) 444, 825
PspN4I GGNNCC 2 cut(s) 741, 750
PspPI GGNCC 2 cut(s) 425, 823
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 3 cut(s) 90, 222, 894
SatI GCNGC 5 cut(s) 86, 183, 197, 396, 483
Sau3AI GATC 3 cut(s) 321, 493, 748
Sau96I GGNCC 2 cut(s) 425, 823
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 446, 455, 827
SduI GDGCHC 3 cut(s) 516, 589, 945
SexAI ACCWGGT 1 cut(s) 825
SfaNI GCATC 5 cut(s) 223, 245, 469, 863, 920
SfcI CTRYAG 2 cut(s) 438, 871
SfiI GGCCNNNNNGGCC 1 cut(s) 433
SinI GGWCC 1 cut(s) 823
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 4 cut(s) 91, 340, 802, 973
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 3 cut(s) 196, 420, 468
SspMI CTAG 3 cut(s) 174, 258, 991
StuI AGGCCT 1 cut(s) 552
StyD4I CCNGG 3 cut(s) 444, 453, 825
StyI CCWWGG 2 cut(s) 516, 915
TaaI ACNGT 2 cut(s) 367, 633
TaqI TCGA 1 cut(s) 324
TasI AATT 4 cut(s) 91, 340, 802, 973
TatI WGTACW 1 cut(s) 374
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 4 cut(s) 107, 170, 299, 722
Tru1I TTAA 3 cut(s) 90, 222, 894
Tru9I TTAA 3 cut(s) 90, 222, 894
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 4 cut(s) 85, 182, 395, 482
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 2 cut(s) 46, 575
VneI GTGCAC 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 823
XapI RAATTY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XspI CTAG 3 cut(s) 174, 258, 991
Zsp2I ATGCAT 2 cut(s) 238, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.