Rh2BG181200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002583
Physical Location & Seq
Forward (+)
16146293 .. 16149561
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG181200.1

Sequence Viewer

Length: 1053 bp
ATGAACAGGACAAAGTCATCAACGACTGTTGCTCTTGCTGCTTTGACTGCACCGAGACCATTCTTGATTACTTGTTCTGCGGTTTCTGTTAGACATGTGGATTCGATTGACTACAAGCTTAAATTAACTTGTTCCTCTTTCACTGTTCATATTAGTAAGTTCTATGATTCCTCTTGTCCCAACTTGAGCAAGATTGTTCAACAAGGCGTTCGGTCTGCTATTGCAAATGATTCTAGGATTGCAGCCTCACTCTTGCGGCTTCACTTCCATGATTGCTTTGTTAATGGATGTGACGCATCTATACTTCTTGACGATACTAGCACACTTAAGGGGGAGAAAAATGCTTTGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATCAAGTTAGCACTGGAGGAAGCTTGCCCATGCACTGTTTCCTGTACTGACATACTCACTCTTGCTGCAACCTCAGCTGTTTATTTTAGCGGAGGGCCATATTGGCCTGTAGCACTGGGTCGCCGAGATGGCACAACAGCAAGTGAAGATGCAGCTAATGACGACTTGCCATCACCTTTTGAGCCCTTGGAAAACATCACTGCAAAGTTTGCAGCAAAAGGCCTTAATTTAAGGGATGTTGTTGTCCTCTCAGGTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGGTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCAAGCTGATTCTGATACCAAATTGGCTCCACTTGATCTTGTCACTTCCAACAGGTTTGATAACGTTTACTTCAAAAGACTGGTGAACAAATCAGGGCTTCTACAGTCAGACCAGGTCCTTATGGGGGACAGTACAACTGCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAATATAGGTGTGCTTACTGGACAAAATGGACAAATTAGGAAGAATTGTAGGGTGGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

350

Amino Acids

37.96

Weight (kDa)

8.43

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 66 - 312 5.4e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 80, 256, 480
AclI AACGTT 1 cut(s) 837
AfaI GTAC 2 cut(s) 436, 907
AfiI CCNNNNNNNGG 1 cut(s) 898
AflII CTTAAG 1 cut(s) 326
AflIII ACRYGT 2 cut(s) 94, 762
AgsI TTSAA 6 cut(s) 200, 682, 697, 847, 918, 955
AjnI CCWGG 1 cut(s) 885
AluBI AGCT 6 cut(s) 118, 413, 467, 545, 779, 930
AluI AGCT 6 cut(s) 118, 413, 467, 545, 779, 930
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 1 cut(s) 49
Alw44I GTGCAC 1 cut(s) 645
Ama87I CYCGRG 1 cut(s) 709
AoxI GGCC 3 cut(s) 485, 494, 610
ApaLI GTGCAC 1 cut(s) 645
ApeKI GCWGC 5 cut(s) 38, 242, 455, 542, 602
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspS9I GGNCC 2 cut(s) 485, 889
AsuC2I CCSGG 1 cut(s) 725
AsuHPI GGTGA 3 cut(s) 555, 868, 991
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 1 cut(s) 889
BaeGI GKGCMC 2 cut(s) 649, 770
BanII GRGCYC 1 cut(s) 576
BarI GAAGNNNNNNTAC 2 cut(s) 898, 930
Bbv12I GWGCWC 1 cut(s) 649
BbvCI CCTCAGC 1 cut(s) 463
BbvI GCAGC 5 cut(s) 25, 254, 442, 554, 614
BccI CCATC 3 cut(s) 512, 568, 979
BciT130I CCWGG 1 cut(s) 887
BcnI CCSGG 1 cut(s) 725
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 2 cut(s) 234, 318
BfmI CTRYAG 3 cut(s) 498, 875, 931
BfrI CTTAAG 1 cut(s) 326
BglI GCCNNNNNGGC 2 cut(s) 493, 519
BisI GCNGC 6 cut(s) 39, 243, 257, 456, 543, 603
BlsI GCNGC 6 cut(s) 40, 244, 258, 457, 544, 604
Bme1390I CCNGG 2 cut(s) 725, 887
Bme18I GGWCC 1 cut(s) 889
BmeT110I CYCGRG 1 cut(s) 709
BmgT120I GGNCC 2 cut(s) 485, 889
BmiI GGNNCC 1 cut(s) 801
BmrFI CCNGG 2 cut(s) 725, 887
BmrI ACTGGG 1 cut(s) 515
BmsI GCATC 3 cut(s) 305, 529, 980
BmuI ACTGGG 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 725
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 576
Bsc4I CCNNNNNNNGG 1 cut(s) 898
Bse1I ACTGG 4 cut(s) 408, 510, 858, 1012
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 2 cut(s) 293, 631
BseLI CCNNNNNNNGG 1 cut(s) 898
BseMII CTCAG 3 cut(s) 477, 654, 680
BseNI ACTGG 4 cut(s) 408, 510, 858, 1012
BseSI GKGCMC 2 cut(s) 649, 770
BseXI GCAGC 5 cut(s) 25, 254, 442, 554, 614
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 3 cut(s) 487, 496, 612
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 709
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 2 cut(s) 162, 914
BslI CCNNNNNNNGG 1 cut(s) 898
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 2 cut(s) 162, 914
BsnI GGCC 3 cut(s) 487, 496, 612
Bso31I GGTCTC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 3 cut(s) 576, 649, 770
Bsp143I GATC 1 cut(s) 808
BspACI CCGC 3 cut(s) 80, 256, 480
BspANI GGCC 3 cut(s) 487, 496, 612
BspCNI CTCAG 3 cut(s) 476, 653, 679
BspLI GGNNCC 1 cut(s) 801
BspTI CTTAAG 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 49
BsrI ACTGG 4 cut(s) 408, 510, 858, 1012
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 1 cut(s) 808
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 887
Bst4CI ACNGT 6 cut(s) 28, 145, 427, 693, 879, 905
BstAFI CTTAAG 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 415, 716
BstDEI CTNAG 3 cut(s) 463, 640, 666
BstF5I GGATG 2 cut(s) 293, 631
BstKTI GATC 1 cut(s) 811
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 808
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 464, 493, 519, 599
BstNI CCWGG 1 cut(s) 887
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 723, 885
BstSFI CTRYAG 3 cut(s) 498, 875, 931
BstSLI GKGCMC 2 cut(s) 649, 770
BstV1I GCAGC 5 cut(s) 25, 254, 442, 554, 614
BsuRI GGCC 3 cut(s) 487, 496, 612
BtsCI GGATG 2 cut(s) 293, 631
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 6 cut(s) 141, 401, 423, 503, 588, 674
Cac8I GCNNGC 2 cut(s) 415, 716
Cfr13I GGNCC 2 cut(s) 485, 889
CseI GACGC 1 cut(s) 302
CsiI ACCWGGT 1 cut(s) 885
Csp6I GTAC 2 cut(s) 435, 906
CviAII CATG 3 cut(s) 95, 269, 420
CviQI GTAC 2 cut(s) 435, 906
DdeI CTNAG 3 cut(s) 463, 640, 666
DpnI GATC 1 cut(s) 810
DpnII GATC 1 cut(s) 808
Eco130I CCWWGG 1 cut(s) 576
Eco147I AGGCCT 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 889
Eco88I CYCGRG 1 cut(s) 709
EcoO109I RGGNCCY 1 cut(s) 889
EcoRII CCWGG 1 cut(s) 885
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 3 cut(s) 98, 272, 423
FaqI GGGAC 2 cut(s) 162, 914
FatI CATG 3 cut(s) 94, 268, 419
Fnu4HI GCNGC 6 cut(s) 39, 243, 257, 456, 543, 603
FokI GGATG 2 cut(s) 300, 638
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 6 cut(s) 39, 243, 257, 456, 543, 603
FspBI CTAG 2 cut(s) 234, 318
GluI GCNGC 6 cut(s) 39, 243, 257, 456, 543, 603
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 3 cut(s) 487, 496, 612
HapII CCGG 1 cut(s) 725
HgaI GACGC 1 cut(s) 302
Hin1II CATG 3 cut(s) 98, 272, 423
HindIII AAGCTT 2 cut(s) 116, 411
HinfI GANTC 6 cut(s) 101, 167, 230, 359, 707, 782
HpaII CCGG 1 cut(s) 725
HphI GGTGA 3 cut(s) 555, 868, 991
Hpy166II GTNNAC 3 cut(s) 647, 841, 859
Hpy188I TCNGA 3 cut(s) 368, 787, 883
Hpy188III TCNNGA 3 cut(s) 64, 308, 682
Hpy8I GTNNAC 3 cut(s) 647, 841, 859
HpyCH4III ACNGT 6 cut(s) 28, 145, 427, 693, 879, 905
HpyCH4IV ACGT 2 cut(s) 762, 837
HpyCH4V TGCA 9 cut(s) 50, 224, 242, 423, 458, 542, 593, 602, 647
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 464, 493, 519, 599
HpyF3I CTNAG 3 cut(s) 463, 640, 666
HpySE526I ACGT 2 cut(s) 762, 837
Hsp92II CATG 3 cut(s) 98, 272, 423
Kzo9I GATC 1 cut(s) 808
LmnI GCTCC 2 cut(s) 805, 968
Lsp1109I GCAGC 5 cut(s) 25, 254, 442, 554, 614
LweI GCATC 3 cut(s) 305, 529, 980
MabI ACCWGGT 1 cut(s) 885
MaeI CTAG 2 cut(s) 234, 318
MaeII ACGT 2 cut(s) 762, 837
MaeIII GTNAC 3 cut(s) 290, 704, 814
MalI GATC 1 cut(s) 810
MboI GATC 1 cut(s) 808
MboII GAAGA 3 cut(s) 548, 994, 1042
MhlI GDGCHC 3 cut(s) 576, 649, 770
MluCI AATT 6 cut(s) 122, 616, 794, 1023, 1033, 1048
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 846
MnlI CCTC 8 cut(s) 145, 181, 256, 362, 400, 472, 476, 647
MseI TTAA 6 cut(s) 120, 125, 282, 327, 615, 620
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 467
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 725, 887
MvaI CCWGG 1 cut(s) 887
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 464, 493, 519, 599
NciI CCSGG 1 cut(s) 725
NdeII GATC 1 cut(s) 808
NlaIII CATG 3 cut(s) 98, 272, 423
NlaIV GGNNCC 1 cut(s) 801
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 3 cut(s) 290, 704, 814
NspI RCATGY 1 cut(s) 98
PceI AGGCCT 1 cut(s) 612
PciI ACATGT 1 cut(s) 94
PfeI GAWTC 5 cut(s) 101, 167, 230, 359, 782
PflFI GACNNNGTC 2 cut(s) 13, 887
PkrI GCNGC 6 cut(s) 40, 244, 258, 457, 544, 604
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PpuMI RGGWCCY 1 cut(s) 889
PscI ACATGT 1 cut(s) 94
Psp1406I AACGTT 1 cut(s) 837
Psp5II RGGWCCY 1 cut(s) 889
Psp6I CCWGG 1 cut(s) 885
PspGI CCWGG 1 cut(s) 885
PspN4I GGNNCC 1 cut(s) 801
PspPI GGNCC 2 cut(s) 485, 889
PspPPI RGGWCCY 1 cut(s) 889
PsyI GACNNNGTC 2 cut(s) 13, 887
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 436, 907
RsaNI GTAC 2 cut(s) 435, 906
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 6 cut(s) 120, 125, 282, 327, 615, 620
SatI GCNGC 6 cut(s) 39, 243, 257, 456, 543, 603
Sau3AI GATC 1 cut(s) 808
Sau96I GGNCC 2 cut(s) 485, 889
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 2 cut(s) 725, 887
SduI GDGCHC 3 cut(s) 576, 649, 770
SexAI ACCWGGT 1 cut(s) 885
SfaNI GCATC 3 cut(s) 305, 529, 980
SfcI CTRYAG 3 cut(s) 498, 875, 931
SfiI GGCCNNNNNGGCC 1 cut(s) 493
SinI GGWCC 1 cut(s) 889
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 184, 326
SmoI CTYRAG 2 cut(s) 184, 326
Sse9I AATT 6 cut(s) 122, 616, 794, 1023, 1033, 1048
SseBI AGGCCT 1 cut(s) 612
SsiI CCGC 3 cut(s) 80, 256, 480
SspMI CTAG 2 cut(s) 234, 318
StuI AGGCCT 1 cut(s) 612
StyD4I CCNGG 2 cut(s) 723, 885
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 6 cut(s) 28, 145, 427, 693, 879, 905
TaiI ACGT 2 cut(s) 765, 840
TaqI TCGA 1 cut(s) 104
TaqII GACCGA 1 cut(s) 201
TasI AATT 6 cut(s) 122, 616, 794, 1023, 1033, 1048
TatI WGTACW 2 cut(s) 434, 905
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 5 cut(s) 101, 167, 230, 359, 782
Tru1I TTAA 6 cut(s) 120, 125, 282, 327, 615, 620
Tru9I TTAA 6 cut(s) 120, 125, 282, 327, 615, 620
TscAI CASTG 6 cut(s) 148, 408, 430, 510, 595, 674
TseFI GTSAC 3 cut(s) 290, 704, 814
TseI GCWGC 5 cut(s) 38, 242, 455, 542, 602
Tsp45I GTSAC 3 cut(s) 290, 704, 814
TspDTI ATGAA 3 cut(s) 17, 137, 390
TspRI CASTG 6 cut(s) 148, 408, 430, 510, 595, 674
Tth111I GACNNNGTC 2 cut(s) 13, 887
Vha464I CTTAAG 1 cut(s) 326
VneI GTGCAC 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 889
XceI RCATGY 1 cut(s) 98
XspI CTAG 2 cut(s) 234, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.