Rh2DG179800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002583
Physical Location & Seq
Forward (+)
15862510 .. 15865001
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG179800.1

Sequence Viewer

Length: 771 bp
ATGGGATGTGACGCATCTATACTTCTTGACGATACTAGCACACTTAAGGGGGAGAAAAATGCTTTGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATCAAGTTAGCACTGGAGGAAGCTTGCCCATGCACTGTTTCCTGTACTGACATACTCACTCTTGCTGCAACCTCAGCTGTTTATTTTAGCGGAGGGCCATATTGGCCTGTAGCACTGGGTCGCCGAGATGGCACAACAGCAAGTGAAGATGCAGCTAATGACGACTTGCCATCACCTTTTGAGCCCTTGGAAAACATCACTGCAAAGTTTGCAGCAAAAGGCCTTAATTTAAGGGATGTTGTTGTCCTCTCAGGTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGGTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCAAGCTGATTCTGATACCAAATTGGCTCCACTTGATCTTGTCACTTCCAACAGGTTTGATAACGTTTACTTCAAAAGACTGGTGAACAAATCAGGGCTTCTACAGTCAGACCAGGTCCTTATGGGGGACAGTACAACTGCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAATATAGGTGTGCTTACTGGACAAAATGGACAAATTAGGAAGAATTGTAGGGTGGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

256

Amino Acids

27.67

Weight (kDa)

5.51

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 218 2.8e-69 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclI AACGTT 1 cut(s) 555
AfaI GTAC 2 cut(s) 154, 625
AfiI CCNNNNNNNGG 1 cut(s) 616
AflII CTTAAG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 5 cut(s) 400, 415, 565, 636, 673
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 5 cut(s) 131, 185, 263, 497, 648
AluI AGCT 5 cut(s) 131, 185, 263, 497, 648
Alw21I GWGCWC 1 cut(s) 367
Alw44I GTGCAC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 427
AoxI GGCC 3 cut(s) 203, 212, 328
ApaLI GTGCAC 1 cut(s) 363
ApeKI GCWGC 3 cut(s) 173, 260, 320
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AspS9I GGNCC 2 cut(s) 203, 607
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 273, 586, 709
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 1 cut(s) 607
BaeGI GKGCMC 2 cut(s) 367, 488
BanII GRGCYC 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 160, 272, 332
BccI CCATC 3 cut(s) 230, 286, 697
BciT130I CCWGG 1 cut(s) 605
BcnI CCSGG 1 cut(s) 443
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 3 cut(s) 216, 593, 649
BfrI CTTAAG 1 cut(s) 44
BglI GCCNNNNNGGC 2 cut(s) 211, 237
BisI GCNGC 3 cut(s) 174, 261, 321
BlsI GCNGC 3 cut(s) 175, 262, 322
Bme1390I CCNGG 2 cut(s) 443, 605
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 203, 607
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 2 cut(s) 443, 605
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 3 cut(s) 23, 247, 698
BmuI ACTGGG 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 4 cut(s) 126, 228, 576, 730
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 11, 349
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 3 cut(s) 195, 372, 398
BseNI ACTGG 4 cut(s) 126, 228, 576, 730
BseSI GKGCMC 2 cut(s) 367, 488
BseXI GCAGC 3 cut(s) 160, 272, 332
BshFI GGCC 3 cut(s) 205, 214, 330
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 3 cut(s) 205, 214, 330
BsoBI CYCGRG 1 cut(s) 427
Bsp1286I GDGCHC 3 cut(s) 294, 367, 488
Bsp143I GATC 1 cut(s) 526
BspACI CCGC 1 cut(s) 198
BspANI GGCC 3 cut(s) 205, 214, 330
BspCNI CTCAG 3 cut(s) 194, 371, 397
BspLI GGNNCC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 4 cut(s) 126, 228, 576, 730
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 1 cut(s) 526
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 4 cut(s) 145, 411, 597, 623
BstAFI CTTAAG 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 133, 434
BstDEI CTNAG 3 cut(s) 181, 358, 384
BstF5I GGATG 2 cut(s) 11, 349
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 4 cut(s) 182, 211, 237, 317
BstNI CCWGG 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 441, 603
BstSFI CTRYAG 3 cut(s) 216, 593, 649
BstSLI GKGCMC 2 cut(s) 367, 488
BstV1I GCAGC 3 cut(s) 160, 272, 332
BsuRI GGCC 3 cut(s) 205, 214, 330
BtsCI GGATG 2 cut(s) 11, 349
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 5 cut(s) 119, 141, 221, 306, 392
Cac8I GCNNGC 2 cut(s) 133, 434
Cfr13I GGNCC 2 cut(s) 203, 607
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 603
Csp6I GTAC 2 cut(s) 153, 624
CviAII CATG 1 cut(s) 138
CviQI GTAC 2 cut(s) 153, 624
DdeI CTNAG 3 cut(s) 181, 358, 384
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 607
Eco88I CYCGRG 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 141
FaiI YATR 9 cut(s) 20, 93, 139, 161, 208, 374, 614, 651, 713
FaqI GGGAC 1 cut(s) 632
FatI CATG 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 174, 261, 321
FokI GGATG 2 cut(s) 18, 356
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 174, 261, 321
FspBI CTAG 1 cut(s) 36
GluI GCNGC 3 cut(s) 174, 261, 321
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 3 cut(s) 205, 214, 330
HapII CCGG 1 cut(s) 443
HgaI GACGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 3 cut(s) 77, 425, 500
HpaII CCGG 1 cut(s) 443
HphI GGTGA 3 cut(s) 273, 586, 709
Hpy166II GTNNAC 3 cut(s) 365, 559, 577
Hpy188I TCNGA 3 cut(s) 86, 505, 601
Hpy188III TCNNGA 2 cut(s) 26, 400
Hpy8I GTNNAC 3 cut(s) 365, 559, 577
HpyCH4III ACNGT 4 cut(s) 145, 411, 597, 623
HpyCH4IV ACGT 2 cut(s) 480, 555
HpyCH4V TGCA 6 cut(s) 141, 176, 260, 311, 320, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 211, 237, 317
HpyF3I CTNAG 3 cut(s) 181, 358, 384
HpySE526I ACGT 2 cut(s) 480, 555
Hsp92II CATG 1 cut(s) 141
Kzo9I GATC 1 cut(s) 526
LmnI GCTCC 2 cut(s) 523, 686
Lsp1109I GCAGC 3 cut(s) 160, 272, 332
LweI GCATC 3 cut(s) 23, 247, 698
MabI ACCWGGT 1 cut(s) 603
MaeI CTAG 1 cut(s) 36
MaeII ACGT 2 cut(s) 480, 555
MaeIII GTNAC 3 cut(s) 8, 422, 532
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 3 cut(s) 266, 712, 760
MhlI GDGCHC 3 cut(s) 294, 367, 488
MluCI AATT 5 cut(s) 334, 512, 741, 751, 766
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 5 cut(s) 80, 118, 190, 194, 365
MseI TTAA 3 cut(s) 45, 333, 338
MspA1I CMGCKG 1 cut(s) 185
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 443, 605
MvaI CCWGG 1 cut(s) 605
MwoI GCNNNNNNNGC 4 cut(s) 182, 211, 237, 317
NciI CCSGG 1 cut(s) 443
NdeII GATC 1 cut(s) 526
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 1 cut(s) 519
NmeAIII GCCGAG 1 cut(s) 257
NmuCI GTSAC 3 cut(s) 8, 422, 532
PceI AGGCCT 1 cut(s) 330
PfeI GAWTC 2 cut(s) 77, 500
PflFI GACNNNGTC 1 cut(s) 605
PkrI GCNGC 3 cut(s) 175, 262, 322
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 607
Psp1406I AACGTT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 2 cut(s) 203, 607
PspPPI RGGWCCY 1 cut(s) 607
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 154, 625
RsaNI GTAC 2 cut(s) 153, 624
SaqAI TTAA 3 cut(s) 45, 333, 338
SatI GCNGC 3 cut(s) 174, 261, 321
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 2 cut(s) 203, 607
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 2 cut(s) 443, 605
SduI GDGCHC 3 cut(s) 294, 367, 488
SexAI ACCWGGT 1 cut(s) 603
SfaNI GCATC 3 cut(s) 23, 247, 698
SfcI CTRYAG 3 cut(s) 216, 593, 649
SfiI GGCCNNNNNGGCC 1 cut(s) 211
SinI GGWCC 1 cut(s) 607
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 5 cut(s) 334, 512, 741, 751, 766
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 36
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 441, 603
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 4 cut(s) 145, 411, 597, 623
TaiI ACGT 2 cut(s) 483, 558
TasI AATT 5 cut(s) 334, 512, 741, 751, 766
TatI WGTACW 2 cut(s) 152, 623
TfiI GAWTC 2 cut(s) 77, 500
Tru1I TTAA 3 cut(s) 45, 333, 338
Tru9I TTAA 3 cut(s) 45, 333, 338
TscAI CASTG 5 cut(s) 126, 148, 228, 313, 392
TseFI GTSAC 3 cut(s) 8, 422, 532
TseI GCWGC 3 cut(s) 173, 260, 320
Tsp45I GTSAC 3 cut(s) 8, 422, 532
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 5 cut(s) 126, 148, 228, 313, 392
Tth111I GACNNNGTC 1 cut(s) 605
Vha464I CTTAAG 1 cut(s) 44
VneI GTGCAC 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 607
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.