Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002583

Physical Location & Seq

Genomic Coordinates Reverse (-)

76879864 .. 76881570

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGCACACTTGCTATAAACTTATTACCTATGTTACCTTGTTTTGCTTCTTGTTCATAAGCCCTCCTCTTGTCTCCTCTCAGCTTAATTATAGGTTCTATGATTCCTCTTGTCCCAACTTGAGCAAGATTGTTCAACAAGGCGTTTGGTCAGCTATTGCAAACGATTCTAGGATTGCAGCCTCACTCTTGCGGCTTCACTTCCATGATTGCTTTGTTAATAGTGGAGGGCCATTTTGGCCCGTAGCCCTGGGTCGCCGAGACGGCACTACCGCAAGTGAAGATGCAGCTAATGATGATCTGCCATCACCATTTGAGCCCTTGGAAAACATCACTGCAAAGTTCACAGCCAAAGGCCTTAACATAAAGGATGTTGTTGTCCTCTCAGGTTTGGTTCCTGTTACCAAACGCATTCGTTATCGATACAATGCAAACTACTCTCAACTGAGTCTCAAGTCTCGGCTACACTTGTTTTCGATGCAGTGGTTACTCGAACCAAGTATATTAACCTATACCCTATTTGCAGGTGCACACACTATTGGCTTTGCTCAATGCTTCACATTCAAGCCAAGACTGTTCAACTTTGATGACTCTGGCAAACCAGACCCAACATTAGACACATCATTTCTTACAAATCTACAAAGCGTGTGCCCAAATCAAGCTGACTCTGACACCAAACTGGCTCCACTGGATCCGGTCACTTCAACCAAGTTTGATAATGTTTACTTCAAAAGGCTGGTGAACAATTCTGGGCTTCTCCAGTCGGACCAGGTCCTTATGGGGGACAATAGGACTGCTTCAATGGTTATCAGCTATAGCAGATTTCCTTATCTGTTTAACAAGGACTTTGGAGAATCCATGGTGAAGATGGCAAATATAGGTGTGCTCACTGGACAAAGTGGTCAAATCAGGAAGAATTGTAGGGTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

311

Amino Acids

34.84

Weight (kDa)

8.77

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	74 - 131	4.1e-14	Peroxidase
peroxidase	PF00141	173 - 273	1.7e-24	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49570
fragaria_vesca	FvH4_1g15550 FvH4_1g15551 FvH4_1g15551 FvH4_2g06860
malus_domestica	MD02G1167700.v1.1 MD05G1075100.v1.1 MD15G1279900.v1.1
prunus_persica	Prupe.7G137500_v2.0.a1 Prupe.8G116400_v2.0.a1
pyrus_communis	pycom05g06820
rosa_chinensis	RchiOBHm_Chr2g0104851 RchiOBHm_Chr2g0104861 RchiOBHm_Chr6g0259161
rosa_laevigata	RLG00000014552 RLG00000017363 RLG00000017364
rosa_multiflora	Rmu_co8495059.1_g000001 Rmu_sc0003419.1_g000019 Rmu_sc0003419.1_g000021 Rmu_sc0004862.1_g000021
rosa_roxburghii	Rroxscaffold_2G00138710 Rroxscaffold_2G00138720 Rroxscaffold_7G00206470
rosa_rugosa	Rorug02G0123500 Rorug05G0585300
rosa_samantha	Rh2AG173600 Rh2AG173800 Rh2BG181200 Rh2BG181400 Rh2CG178600 Rh2CG178700 Rh2DG179800 Rh2DG180000 Rh6AG102300 Rh6CG091700 Rh6DG085700
rosa_wichuraiana	Rw2G013660 Rw2G013670 Rw6G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
AasI	GACNNNNNNGTC	1 cut(s)	900
Acc36I	ACCTGC	1 cut(s)	515
AciI	CCGC	2 cut(s)	193, 273
AclWI	GGATC	2 cut(s)	686, 699
AfiI	CCNNNNNNNGG	1 cut(s)	781
AgsI	TTSAA	6 cut(s)	137, 565, 580, 705, 730, 801
AjnI	CCWGG	2 cut(s)	249, 768
AluBI	AGCT	5 cut(s)	85, 155, 290, 662, 813
AluI	AGCT	5 cut(s)	85, 155, 290, 662, 813
Alw21I	GWGCWC	3 cut(s)	9, 532, 888
Alw26I	GTCTC	4 cut(s)	79, 255, 455, 462
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	2 cut(s)	686, 699
AoxI	GGCC	3 cut(s)	230, 239, 355
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	179, 287
AspS9I	GGNCC	4 cut(s)	230, 240, 766, 772
AsuHPI	GGTGA	3 cut(s)	300, 751, 874
AvaII	GGWCC	2 cut(s)	766, 772
BaeGI	GKGCMC	2 cut(s)	532, 653
BamHI	GGATCC	1 cut(s)	691
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	3 cut(s)	9, 532, 888
BbvI	GCAGC	2 cut(s)	191, 299
BccI	CCATC	2 cut(s)	313, 862
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	251, 770
BcoDI	GTCTC	4 cut(s)	79, 255, 455, 462
BfaI	CTAG	2 cut(s)	171, 934
BfmI	CTRYAG	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	515
BglI	GCCNNNNNGGC	2 cut(s)	238, 264
BisI	GCNGC	3 cut(s)	180, 194, 288
BlsI	GCNGC	3 cut(s)	181, 195, 289
Bme1390I	CCNGG	2 cut(s)	251, 770
Bme18I	GGWCC	2 cut(s)	766, 772
BmgT120I	GGNCC	4 cut(s)	230, 240, 766, 772
BmiI	GGNNCC	3 cut(s)	396, 684, 693
BmrFI	CCNGG	2 cut(s)	251, 770
BmsI	GCATC	2 cut(s)	274, 468
BpmI	CTGGAG	1 cut(s)	743
BpuEI	CTTGAG	2 cut(s)	142, 437
Bsa29I	ATCGAT	1 cut(s)	421
BsaJI	CCNNGG	4 cut(s)	249, 250, 321, 858
BsaWI	WCCGGW	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse1I	ACTGG	4 cut(s)	684, 693, 760, 895
BseBI	CCWGG	2 cut(s)	251, 770
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	4 cut(s)	249, 250, 321, 858
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMII	CTCAG	3 cut(s)	95, 399, 437
BseNI	ACTGG	4 cut(s)	684, 693, 760, 895
BseRI	GAGGAG	2 cut(s)	57, 67
BseSI	GKGCMC	2 cut(s)	532, 653
BseXI	GCAGC	2 cut(s)	191, 299
BshFI	GGCC	3 cut(s)	232, 241, 357
BshVI	ATCGAT	1 cut(s)	421
BsiHKAI	GWGCWC	3 cut(s)	9, 532, 888
BsiSI	CCGG	1 cut(s)	695
BslFI	GGGAC	2 cut(s)	99, 797
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	4 cut(s)	79, 255, 455, 462
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	99, 797
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	3 cut(s)	232, 241, 357
Bsp1286I	GDGCHC	5 cut(s)	9, 321, 532, 653, 888
Bsp143I	GATC	2 cut(s)	298, 691
Bsp19I	CCATGG	1 cut(s)	858
BspACI	CCGC	2 cut(s)	193, 273
BspANI	GGCC	3 cut(s)	232, 241, 357
BspCNI	CTCAG	3 cut(s)	94, 398, 438
BspDI	ATCGAT	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	396, 684, 693
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	686, 699
BsrI	ACTGG	4 cut(s)	684, 693, 760, 895
BssECI	CCNNGG	4 cut(s)	249, 250, 321, 858
BssMI	GATC	2 cut(s)	298, 691
BssT1I	CCWWGG	2 cut(s)	321, 858
Bst2UI	CCWGG	2 cut(s)	251, 770
Bst4CI	ACNGT	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	81, 385, 446
BstDSI	CCRYGG	1 cut(s)	858
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	301, 694
BstMAI	GTCTC	4 cut(s)	79, 255, 455, 462
BstMBI	GATC	2 cut(s)	298, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 264
BstNI	CCWGG	2 cut(s)	251, 770
BstSCI	CCNGG	2 cut(s)	249, 768
BstSFI	CTRYAG	1 cut(s)	814
BstSLI	GKGCMC	2 cut(s)	532, 653
BstV1I	GCAGC	2 cut(s)	191, 299
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
Bsu15I	ATCGAT	1 cut(s)	421
BsuRI	GGCC	3 cut(s)	232, 241, 357
BsuTUI	ATCGAT	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	858
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	2 cut(s)	333, 488
BtsIMutI	CAGTG	4 cut(s)	333, 488, 686, 888
BveI	ACCTGC	1 cut(s)	515
Cfr13I	GGNCC	4 cut(s)	230, 240, 766, 772
ClaI	ATCGAT	1 cut(s)	421
CsiI	ACCWGGT	1 cut(s)	768
CviAII	CATG	2 cut(s)	206, 859
DdeI	CTNAG	3 cut(s)	81, 385, 446
DpnI	GATC	2 cut(s)	300, 693
DpnII	GATC	2 cut(s)	298, 691
DrdI	GACNNNNNNGTC	1 cut(s)	900
DseDI	GACNNNNNNGTC	1 cut(s)	900
Eco130I	CCWWGG	2 cut(s)	321, 858
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	766, 772
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRII	CCWGG	2 cut(s)	249, 768
EcoT14I	CCWWGG	2 cut(s)	321, 858
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	321, 858
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	209, 862
FaqI	GGGAC	2 cut(s)	99, 797
FatI	CATG	2 cut(s)	205, 858
Fnu4HI	GCNGC	3 cut(s)	180, 194, 288
FokI	GGATG	1 cut(s)	383
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	3 cut(s)	180, 194, 288
FspBI	CTAG	2 cut(s)	171, 934
GluI	GCNGC	3 cut(s)	180, 194, 288
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	3 cut(s)	232, 241, 357
HapII	CCGG	1 cut(s)	695
Hin1II	CATG	2 cut(s)	209, 862
HinfI	GANTC	6 cut(s)	104, 167, 448, 590, 665, 854
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	3 cut(s)	300, 751, 874
Hpy166II	GTNNAC	5 cut(s)	345, 530, 724, 742, 931
Hpy188I	TCNGA	2 cut(s)	670, 766
Hpy188III	TCNNGA	1 cut(s)	910
Hpy8I	GTNNAC	5 cut(s)	345, 530, 724, 742, 931
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4V	TGCA	8 cut(s)	161, 179, 287, 338, 431, 481, 524, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 264
HpyF3I	CTNAG	3 cut(s)	81, 385, 446
Hsp92II	CATG	2 cut(s)	209, 862
Kzo9I	GATC	2 cut(s)	298, 691
LmnI	GCTCC	2 cut(s)	4, 688
Lsp1109I	GCAGC	2 cut(s)	191, 299
LweI	GCATC	2 cut(s)	274, 468
MabI	ACCWGGT	1 cut(s)	768
MaeI	CTAG	2 cut(s)	171, 934
MaeIII	GTNAC	4 cut(s)	34, 400, 486, 697
MalI	GATC	2 cut(s)	300, 693
MboI	GATC	2 cut(s)	298, 691
MboII	GAAGA	3 cut(s)	293, 877, 925
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	5 cut(s)	9, 321, 532, 653, 888
MluCI	AATT	3 cut(s)	88, 745, 916
MlyI	GAGTC	3 cut(s)	457, 584, 659
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	7 cut(s)	75, 78, 88, 118, 193, 221, 392
MseI	TTAA	5 cut(s)	87, 219, 360, 506, 837
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	2 cut(s)	251, 770
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	251, 770
MwoI	GCNNNNNNNGC	2 cut(s)	238, 264
NcoI	CCATGG	1 cut(s)	858
NdeII	GATC	2 cut(s)	298, 691
NlaIII	CATG	2 cut(s)	209, 862
NlaIV	GGNNCC	3 cut(s)	396, 684, 693
NmeAIII	GCCGAG	2 cut(s)	284, 439
NmuCI	GTSAC	1 cut(s)	697
PaqCI	CACCTGC	1 cut(s)	515
PasI	CCCWGGG	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	357
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	104, 167, 854
PflFI	GACNNNGTC	1 cut(s)	770
PkrI	GCNGC	3 cut(s)	181, 195, 289
PleI	GAGTC	3 cut(s)	456, 584, 659
PpsI	GAGTC	3 cut(s)	456, 584, 659
PpuMI	RGGWCCY	1 cut(s)	772
Psp5II	RGGWCCY	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	249, 768
PspGI	CCWGG	2 cut(s)	249, 768
PspN4I	GGNNCC	3 cut(s)	396, 684, 693
PspPI	GGNCC	4 cut(s)	230, 240, 766, 772
PspPPI	RGGWCCY	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	5 cut(s)	87, 219, 360, 506, 837
SatI	GCNGC	3 cut(s)	180, 194, 288
Sau3AI	GATC	2 cut(s)	298, 691
Sau96I	GGNCC	4 cut(s)	230, 240, 766, 772
SchI	GAGTC	3 cut(s)	457, 584, 659
ScrFI	CCNGG	2 cut(s)	251, 770
SduI	GDGCHC	5 cut(s)	9, 321, 532, 653, 888
SexAI	ACCWGGT	1 cut(s)	768
SfaNI	GCATC	2 cut(s)	274, 468
SfcI	CTRYAG	1 cut(s)	814
SfiI	GGCCNNNNNGGCC	1 cut(s)	238
SinI	GGWCC	2 cut(s)	766, 772
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	121, 452
SmoI	CTYRAG	2 cut(s)	121, 452
Sse9I	AATT	3 cut(s)	88, 745, 916
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	2 cut(s)	193, 273
SspMI	CTAG	2 cut(s)	171, 934
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	249, 768
StyI	CCWWGG	2 cut(s)	321, 858
TaaI	ACNGT	1 cut(s)	576
TaqI	TCGA	3 cut(s)	421, 476, 492
TasI	AATT	3 cut(s)	88, 745, 916
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	104, 167, 854
Tru1I	TTAA	5 cut(s)	87, 219, 360, 506, 837
Tru9I	TTAA	5 cut(s)	87, 219, 360, 506, 837
TscAI	CASTG	4 cut(s)	340, 488, 693, 895
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	2 cut(s)	179, 287
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	4 cut(s)	340, 488, 693, 895
Tth111I	GACNNNGTC	1 cut(s)	770
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	766, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XspI	CTAG	2 cut(s)	171, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.