Rh2AG173800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002583
Physical Location & Seq
Forward (+)
16555786 .. 16558049
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG173800.1

Sequence Viewer

Length: 990 bp
ATGGAGCACACTTGCTATAAACTTCTTACCTATGTTACCTTGTTTTGCTTCTTGTTCATAAGCCCTCCTCTTGTCTCCTCTCAGCTTAATTATAGGTTCTATGATTTCTCTTGTCCCAACTTGACCAAGATTGTTCAACAAGGCGTTTGGTCAGCTATTGCAAACGATTCTAGGATTGCAGCCTCACTCTTGCGGCTTCACTTCCATGATTGCTTTGTTAATGGATGTGATGCATCTGTGTTACTTGATGATACTAGCACTCTTAAGGGGGAGAAAAATGCATTTCCCAACAAAGATTCAGCGAGAGGCTTTGAGGTGATTGACAAAATCAAGTCAAATTTGGAGGAAGCTTGCCCATCCACTGTTTCTTGTACTGATATACTCACCCTTGCAGCAACTTCAGCTGTTTACTTTAGTGGAGGGCCATTTTGGCCTGTAGCCCTGGGTCGCCGAGACGGCACTACCGCAAGTGAAGATGCAGCTAATGATGATCTGCCATCACCATTTGAGCCCTTGGAAAACATCACTGCAAAGTTCACAGCCAAAGGCCTTAACATAAAGGATGTTGTTGTCCTCTCAGGTGCACACACTATTGGCTTTGCTCAATGCTTCACATTCAAGCCAAGACTGTTCAATTTTGATGACTCTGGCAAACCAGACCCAACATTAGACACATCATTTCTTACAAATCTACAAAGCGTGTGCCCAAATCAAGCTGACTCTGACACCAAACTGGCTCCACTGGATCCTGTCACTTCAACCAAGTTTGATAATGTTTACTTCAAAAGACTGGTGAACAATTGTGGGCTTCTCCAGTCGGACCAGGTCCTTATGGGGGACAATAGGACTGCTTCAATGGTTATCGGCTATAGCAGATTTCCTTATCTGTTTAACAAGGACTTTGGAGAATCCATGGTGAAGATGGCAAATATAGGTGTGCTCACTGGAAAAAGTGGTCAAATCAGGAAGAATTGTAGGGTTGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

36.18

Weight (kDa)

5.84

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 290 2.5e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 193, 465
AclWI GGATC 2 cut(s) 740, 753
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 1 cut(s) 835
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 6 cut(s) 137, 619, 634, 759, 784, 855
AjnI CCWGG 2 cut(s) 441, 822
AluBI AGCT 6 cut(s) 85, 155, 350, 404, 482, 716
AluI AGCT 6 cut(s) 85, 155, 350, 404, 482, 716
Alw21I GWGCWC 3 cut(s) 9, 586, 942
Alw26I GTCTC 2 cut(s) 79, 447
Alw44I GTGCAC 1 cut(s) 582
AlwI GGATC 2 cut(s) 740, 753
AoxI GGCC 3 cut(s) 422, 431, 547
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 179, 392, 479
ApoI RAATTY 1 cut(s) 337
AspS9I GGNCC 3 cut(s) 422, 820, 826
AsuHPI GGTGA 5 cut(s) 328, 376, 492, 805, 928
AvaII GGWCC 2 cut(s) 820, 826
BaeGI GKGCMC 2 cut(s) 586, 707
BamHI GGATCC 1 cut(s) 745
BanII GRGCYC 1 cut(s) 513
Bbv12I GWGCWC 3 cut(s) 9, 586, 942
BbvI GCAGC 3 cut(s) 191, 404, 491
BccI CCATC 3 cut(s) 364, 505, 916
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 2 cut(s) 443, 824
BcoDI GTCTC 2 cut(s) 79, 447
BfaI CTAG 2 cut(s) 171, 255
BfmI CTRYAG 2 cut(s) 435, 868
BfrI CTTAAG 1 cut(s) 263
BglI GCCNNNNNGGC 2 cut(s) 430, 456
BisI GCNGC 4 cut(s) 180, 194, 393, 480
BlsI GCNGC 4 cut(s) 181, 195, 394, 481
Bme1390I CCNGG 2 cut(s) 443, 824
Bme18I GGWCC 2 cut(s) 820, 826
BmgT120I GGNCC 3 cut(s) 422, 820, 826
BmiI GGNNCC 2 cut(s) 738, 747
BmrFI CCNGG 2 cut(s) 443, 824
BmsI GCATC 3 cut(s) 220, 242, 466
BpmI CTGGAG 1 cut(s) 797
BsaJI CCNNGG 4 cut(s) 441, 442, 513, 912
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 5 cut(s) 738, 747, 795, 814, 949
BseBI CCWGG 2 cut(s) 443, 824
BseDI CCNNGG 4 cut(s) 441, 442, 513, 912
BseGI GGATG 3 cut(s) 230, 356, 568
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMII CTCAG 2 cut(s) 95, 591
BseNI ACTGG 5 cut(s) 738, 747, 795, 814, 949
BseRI GAGGAG 2 cut(s) 57, 67
BseSI GKGCMC 2 cut(s) 586, 707
BseXI GCAGC 3 cut(s) 191, 404, 491
BshFI GGCC 3 cut(s) 424, 433, 549
BsiHKAI GWGCWC 3 cut(s) 9, 586, 942
BslFI GGGAC 2 cut(s) 99, 851
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 2 cut(s) 79, 447
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 2 cut(s) 99, 851
BsnI GGCC 3 cut(s) 424, 433, 549
Bsp1286I GDGCHC 5 cut(s) 9, 513, 586, 707, 942
Bsp143I GATC 2 cut(s) 490, 745
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 2 cut(s) 193, 465
BspANI GGCC 3 cut(s) 424, 433, 549
BspCNI CTCAG 2 cut(s) 94, 590
BspLI GGNNCC 2 cut(s) 738, 747
BspPI GGATC 2 cut(s) 740, 753
BspTI CTTAAG 1 cut(s) 263
BsrI ACTGG 5 cut(s) 738, 747, 795, 814, 949
BssECI CCNNGG 4 cut(s) 441, 442, 513, 912
BssMI GATC 2 cut(s) 490, 745
BssT1I CCWWGG 2 cut(s) 513, 912
Bst2UI CCWGG 2 cut(s) 443, 824
Bst4CI ACNGT 2 cut(s) 364, 630
BstAFI CTTAAG 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 81, 577
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 3 cut(s) 230, 356, 568
BstKTI GATC 2 cut(s) 493, 748
BstMAI GTCTC 2 cut(s) 79, 447
BstMBI GATC 2 cut(s) 490, 745
BstMWI GCNNNNNNNGC 3 cut(s) 401, 430, 456
BstNI CCWGG 2 cut(s) 443, 824
BstSCI CCNGG 2 cut(s) 441, 822
BstSFI CTRYAG 2 cut(s) 435, 868
BstSLI GKGCMC 2 cut(s) 586, 707
BstV1I GCAGC 3 cut(s) 191, 404, 491
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
BsuRI GGCC 3 cut(s) 424, 433, 549
BtgI CCRYGG 1 cut(s) 912
BtsCI GGATG 3 cut(s) 230, 356, 568
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 4 cut(s) 360, 525, 740, 942
Cac8I GCNNGC 1 cut(s) 352
Cfr13I GGNCC 3 cut(s) 422, 820, 826
CsiI ACCWGGT 1 cut(s) 822
Csp6I GTAC 1 cut(s) 372
CviAII CATG 2 cut(s) 206, 913
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 2 cut(s) 81, 577
DpnI GATC 2 cut(s) 492, 747
DpnII GATC 2 cut(s) 490, 745
Eco130I CCWWGG 2 cut(s) 513, 912
Eco147I AGGCCT 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 820, 826
Eco57I CTGAAG 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 826
EcoRII CCWGG 2 cut(s) 441, 822
EcoT14I CCWWGG 2 cut(s) 513, 912
EcoT22I ATGCAT 2 cut(s) 235, 283
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 513, 912
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 2 cut(s) 209, 916
FaqI GGGAC 2 cut(s) 99, 851
FatI CATG 2 cut(s) 205, 912
Fnu4HI GCNGC 4 cut(s) 180, 194, 393, 480
FokI GGATG 3 cut(s) 237, 343, 575
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 4 cut(s) 180, 194, 393, 480
FspBI CTAG 2 cut(s) 171, 255
GluI GCNGC 4 cut(s) 180, 194, 393, 480
GsuI CTGGAG 1 cut(s) 797
HaeIII GGCC 3 cut(s) 424, 433, 549
Hin1II CATG 2 cut(s) 209, 916
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 5 cut(s) 167, 296, 644, 719, 908
HphI GGTGA 5 cut(s) 328, 376, 492, 805, 928
Hpy166II GTNNAC 5 cut(s) 409, 537, 584, 778, 796
Hpy188I TCNGA 2 cut(s) 724, 820
Hpy188III TCNNGA 1 cut(s) 964
Hpy8I GTNNAC 5 cut(s) 409, 537, 584, 778, 796
HpyCH4III ACNGT 2 cut(s) 364, 630
HpyCH4V TGCA 8 cut(s) 161, 179, 233, 281, 392, 479, 530, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 430, 456
HpyF3I CTNAG 2 cut(s) 81, 577
Hsp92II CATG 2 cut(s) 209, 916
Kzo9I GATC 2 cut(s) 490, 745
LmnI GCTCC 2 cut(s) 4, 742
Lsp1109I GCAGC 3 cut(s) 191, 404, 491
LweI GCATC 3 cut(s) 220, 242, 466
MabI ACCWGGT 1 cut(s) 822
MaeI CTAG 2 cut(s) 171, 255
MaeIII GTNAC 3 cut(s) 34, 240, 751
MalI GATC 2 cut(s) 492, 747
MboI GATC 2 cut(s) 490, 745
MboII GAAGA 3 cut(s) 485, 931, 979
MfeI CAATTG 1 cut(s) 799
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 5 cut(s) 9, 513, 586, 707, 942
MluCI AATT 6 cut(s) 88, 337, 634, 799, 970, 985
MlyI GAGTC 2 cut(s) 638, 713
MmeI TCCRAC 1 cut(s) 798
MnlI CCTC 9 cut(s) 75, 78, 88, 193, 299, 307, 337, 413, 584
Mph1103I ATGCAT 2 cut(s) 235, 283
MseI TTAA 5 cut(s) 87, 219, 264, 552, 891
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 404
MspCI CTTAAG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 443, 824
MunI CAATTG 1 cut(s) 799
MvaI CCWGG 2 cut(s) 443, 824
MwoI GCNNNNNNNGC 3 cut(s) 401, 430, 456
NcoI CCATGG 1 cut(s) 912
NdeII GATC 2 cut(s) 490, 745
NlaIII CATG 2 cut(s) 209, 916
NlaIV GGNNCC 2 cut(s) 738, 747
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 1 cut(s) 751
NsiI ATGCAT 2 cut(s) 235, 283
PasI CCCWGGG 1 cut(s) 442
PceI AGGCCT 1 cut(s) 549
PfeI GAWTC 3 cut(s) 167, 296, 908
PflFI GACNNNGTC 1 cut(s) 824
PkrI GCNGC 4 cut(s) 181, 195, 394, 481
PleI GAGTC 2 cut(s) 638, 713
PpsI GAGTC 2 cut(s) 638, 713
PpuMI RGGWCCY 1 cut(s) 826
Psp5II RGGWCCY 1 cut(s) 826
Psp6I CCWGG 2 cut(s) 441, 822
PspGI CCWGG 2 cut(s) 441, 822
PspN4I GGNNCC 2 cut(s) 738, 747
PspPI GGNCC 3 cut(s) 422, 820, 826
PspPPI RGGWCCY 1 cut(s) 826
PsuI RGATCY 1 cut(s) 745
PsyI GACNNNGTC 1 cut(s) 824
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 5 cut(s) 87, 219, 264, 552, 891
SatI GCNGC 4 cut(s) 180, 194, 393, 480
Sau3AI GATC 2 cut(s) 490, 745
Sau96I GGNCC 3 cut(s) 422, 820, 826
SchI GAGTC 2 cut(s) 638, 713
ScrFI CCNGG 2 cut(s) 443, 824
SduI GDGCHC 5 cut(s) 9, 513, 586, 707, 942
SexAI ACCWGGT 1 cut(s) 822
SfaNI GCATC 3 cut(s) 220, 242, 466
SfcI CTRYAG 2 cut(s) 435, 868
SfiI GGCCNNNNNGGCC 1 cut(s) 430
SinI GGWCC 2 cut(s) 820, 826
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 6 cut(s) 88, 337, 634, 799, 970, 985
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 2 cut(s) 193, 465
SspMI CTAG 2 cut(s) 171, 255
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 441, 822
StyI CCWWGG 2 cut(s) 513, 912
TaaI ACNGT 2 cut(s) 364, 630
TasI AATT 6 cut(s) 88, 337, 634, 799, 970, 985
TatI WGTACW 1 cut(s) 371
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 3 cut(s) 167, 296, 908
Tru1I TTAA 5 cut(s) 87, 219, 264, 552, 891
Tru9I TTAA 5 cut(s) 87, 219, 264, 552, 891
TscAI CASTG 4 cut(s) 367, 532, 747, 949
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 3 cut(s) 179, 392, 479
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 4 cut(s) 367, 532, 747, 949
Tth111I GACNNNGTC 1 cut(s) 824
Vha464I CTTAAG 1 cut(s) 263
VneI GTGCAC 1 cut(s) 582
VpaK11BI GGWCC 2 cut(s) 820, 826
XapI RAATTY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XspI CTAG 2 cut(s) 171, 255
Zsp2I ATGCAT 2 cut(s) 235, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.