Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002583

Physical Location & Seq

Genomic Coordinates Forward (+)

9626310 .. 9628163

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACTCACAAAATCATCTCCTGCTTCACCATTCCTTTATGCTTGTTCTTGTTTTTGTGTCCTCTTGTTCATATGTATCCCTTTTCGTATACTAGCCAGCTCGATTACAATTTCTACGACAGATCGTGTCCTCGCTTGTCAATGATTGTCCGGTACAATATTTGGGCAGCTCTCAAGAACGACACCAGGATGGCTGCATCCCTTCTTCGGATGCACTTTCATGATTGTATTGTCAATGGATGTGACGGATCAGTGCTTCTTGATGATACAGATGACTTTAAGGGCGAGAAGAATGCTCCAGCAAATCACAATTCTCTTCGAGGGTTCGAAGTGATCGACAGTGTAAAAGCAGATGTCGAAAAATTCTGCCCATCAACTGTTTCGTGTGCCGATATTTTGACTCTTGCAGCAAGAGAAGCTGTTGTTCTGGCAGGAGGGCCTTTTTGGCCTGTTCCATTGGGCAGAAGAGATGCAACGACAGCAAGTGTGAAGGCAGTTAATGAACAAATACCATCACCTTTTGAGCCTTTAGCGAATATCACTGCCAAGTTCACATCAAAGGGTCTTGACATTAAAGATGTTGTAGTCCTCTCAGGTGGACACACCCTAGGGTTTGCTCAATGCTTCACCTTCAAGAGAAGGCTCTTCAACTTCGACGGCTTGGGCAACCCTGACCCAACACTTGATTCTTCGGCCCTATCAAGCTTGAGAAGAATATGTCCAAAGAAAGATGAAGCAAACAGCAATGTTGCTCCTCTTGATTCCACAAATGTCAAATTTGACAATACCTATTACACAAACCTGGTTCAAAACACAGGTCTTCTAGAATCTGATCAGGCATTGGTGAATGATCCAAATACTGCTGCAATGGTGAACTCTTACAGTGGGAACCCATTCCTTTTCAATAACGATTTTGCAGCATCAATGGTGAAACTTGGTAATGTTGGAGTACTGACTGGGGAAAACGGGCAAATAAGGAAGAAATGTGGATCTGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

334

Amino Acids

36.51

Weight (kDa)

6.3

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49570
fragaria_vesca	FvH4_1g15550 FvH4_1g15551 FvH4_1g15551 FvH4_2g06860
malus_domestica	MD02G1167700.v1.1 MD05G1075100.v1.1 MD15G1279900.v1.1
prunus_persica	Prupe.7G137500_v2.0.a1 Prupe.8G116400_v2.0.a1
pyrus_communis	pycom05g06820
rosa_chinensis	RchiOBHm_Chr2g0104851 RchiOBHm_Chr2g0104861 RchiOBHm_Chr6g0259161
rosa_laevigata	RLG00000014552 RLG00000017363 RLG00000017364
rosa_multiflora	Rmu_co8495059.1_g000001 Rmu_sc0003419.1_g000019 Rmu_sc0003419.1_g000021 Rmu_sc0004862.1_g000021
rosa_roxburghii	Rroxscaffold_2G00138710 Rroxscaffold_2G00138720 Rroxscaffold_7G00206470
rosa_rugosa	Rorug02G0123500 Rorug05G0585300
rosa_samantha	Rh2AG173600 Rh2AG173800 Rh2BG181200 Rh2BG181400 Rh2CG178600 Rh2CG178700 Rh2DG179800 Rh2DG180000 Rh6AG102300 Rh6CG091700 Rh6DG085700
rosa_wichuraiana	Rw2G013660 Rw2G013670 Rw6G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AclWI	GGATC	3 cut(s)	256, 845, 997
AcsI	RAATTY	2 cut(s)	362, 776
AfaI	GTAC	2 cut(s)	155, 951
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	4 cut(s)	634, 649, 809, 904
AjnI	CCWGG	2 cut(s)	185, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	670, 702
AluBI	AGCT	4 cut(s)	100, 170, 419, 705
AluI	AGCT	4 cut(s)	100, 170, 419, 705
AlwI	GGATC	3 cut(s)	256, 845, 997
AoxI	GGCC	3 cut(s)	437, 446, 693
ApeKI	GCWGC	5 cut(s)	167, 194, 407, 863, 917
ApoI	RAATTY	2 cut(s)	362, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
Asp700I	GAANNNNTTC	1 cut(s)	893
AspA2I	CCTAGG	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	437, 694
AsuHPI	GGTGA	6 cut(s)	19, 507, 619, 856, 883, 940
AsuII	TTCGAA	1 cut(s)	327
AvrII	CCTAGG	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	5 cut(s)	179, 181, 419, 850, 929
BccI	CCATC	3 cut(s)	184, 379, 520
BceAI	ACGGC	1 cut(s)	673
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	187, 803
BciVI	GTATCC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	832
BfaI	CTAG	3 cut(s)	93, 608, 824
BfuI	GTATCC	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	445
BisI	GCNGC	5 cut(s)	168, 195, 408, 864, 918
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	5 cut(s)	169, 196, 409, 865, 919
BmcAI	AGTACT	1 cut(s)	951
Bme1390I	CCNGG	2 cut(s)	187, 803
BmgT120I	GGNCC	2 cut(s)	437, 694
BmiI	GGNNCC	1 cut(s)	890
BmrFI	CCNGG	2 cut(s)	187, 803
BmrI	ACTGGG	1 cut(s)	966
BmsI	GCATC	4 cut(s)	201, 206, 460, 929
BmuI	ACTGGG	1 cut(s)	966
BpiI	GAAGAC	1 cut(s)	812
BpmI	CTGGAG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	158, 727
BsaJI	CCNNGG	1 cut(s)	607
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	961
Bse3DI	GCAATG	2 cut(s)	751, 873
BseBI	CCWGG	2 cut(s)	187, 803
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	4 cut(s)	195, 197, 216, 245
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	2 cut(s)	751, 873
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	961
BseRI	GAGGAG	1 cut(s)	744
BseXI	GCAGC	5 cut(s)	179, 181, 419, 850, 929
BshFI	GGCC	3 cut(s)	439, 448, 695
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	439, 448, 695
Bsp119I	TTCGAA	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
BspANI	GGCC	3 cut(s)	439, 448, 695
BspCNI	CTCAG	1 cut(s)	605
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	890
BspPI	GGATC	3 cut(s)	256, 845, 997
BspQI	GCTCTTC	1 cut(s)	650
BspT104I	TTCGAA	1 cut(s)	327
BsrDI	GCAATG	2 cut(s)	751, 873
BsrI	ACTGG	1 cut(s)	961
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
BssNAI	GTATAC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	607
Bst1107I	GTATAC	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	187, 803
Bst4CI	ACNGT	3 cut(s)	341, 379, 884
Bst6I	CTCTTC	3 cut(s)	321, 460, 650
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	592
BstF5I	GGATG	4 cut(s)	195, 197, 216, 245
BstKTI	GATC	6 cut(s)	125, 251, 336, 835, 853, 992
BstMBI	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 445, 479
BstNI	CCWGG	2 cut(s)	187, 803
BstSCI	CCNGG	2 cut(s)	185, 801
BstV1I	GCAGC	5 cut(s)	179, 181, 419, 850, 929
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	989
BstYI	RGATCY	1 cut(s)	989
BstZ17I	GTATAC	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	439, 448, 695
BtsCI	GGATG	4 cut(s)	195, 197, 216, 245
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	258, 346, 540, 889
Cac8I	GCNNGC	1 cut(s)	98
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	437, 694
CsiI	ACCWGGT	1 cut(s)	801
Csp6I	GTAC	2 cut(s)	154, 950
CviAII	CATG	1 cut(s)	221
CviQI	GTAC	2 cut(s)	154, 950
DdeI	CTNAG	1 cut(s)	592
DpnI	GATC	6 cut(s)	124, 250, 335, 834, 852, 991
DpnII	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
Eam1104I	CTCTTC	3 cut(s)	321, 460, 650
EarI	CTCTTC	3 cut(s)	321, 460, 650
Eco130I	CCWWGG	1 cut(s)	607
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	185, 801
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	1 cut(s)	224
FaiI	YATR	6 cut(s)	40, 72, 74, 90, 222, 718
FatI	CATG	1 cut(s)	220
FauNDI	CATATG	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	5 cut(s)	168, 195, 408, 864, 918
FokI	GGATG	4 cut(s)	184, 202, 223, 252
Fsp4HI	GCNGC	5 cut(s)	168, 195, 408, 864, 918
FspBI	CTAG	3 cut(s)	93, 608, 824
GluI	GCNGC	5 cut(s)	168, 195, 408, 864, 918
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	439, 448, 695
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	703
HinfI	GANTC	5 cut(s)	4, 400, 686, 761, 827
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	6 cut(s)	19, 507, 619, 856, 883, 940
Hpy166II	GTNNAC	5 cut(s)	90, 552, 599, 874, 997
Hpy188I	TCNGA	2 cut(s)	210, 832
Hpy188III	TCNNGA	7 cut(s)	175, 221, 260, 566, 634, 758, 824
Hpy8I	GTNNAC	5 cut(s)	90, 552, 599, 874, 997
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	4 cut(s)	212, 484, 633, 640
HpyCH4III	ACNGT	3 cut(s)	341, 379, 884
HpyCH4V	TGCA	6 cut(s)	197, 214, 407, 473, 866, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 445, 479
HpyF3I	CTNAG	1 cut(s)	592
Hsp92II	CATG	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
LguI	GCTCTTC	1 cut(s)	650
LmnI	GCTCC	2 cut(s)	301, 757
Lsp1109I	GCAGC	5 cut(s)	179, 181, 419, 850, 929
LweI	GCATC	4 cut(s)	201, 206, 460, 929
MabI	ACCWGGT	1 cut(s)	801
MaeI	CTAG	3 cut(s)	93, 608, 824
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	6 cut(s)	124, 250, 335, 834, 852, 991
MboI	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
MboII	GAAGA	9 cut(s)	197, 301, 308, 477, 637, 681, 723, 812, 991
MflI	RGATCY	1 cut(s)	989
MluCI	AATT	4 cut(s)	109, 310, 362, 776
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	925
MnlI	CCTC	6 cut(s)	72, 141, 314, 428, 599, 765
MroXI	GAANNNNTTC	1 cut(s)	893
MseI	TTAA	3 cut(s)	279, 498, 573
MslI	CAYNNNNRTG	2 cut(s)	188, 219
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	187, 803
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	2 cut(s)	187, 803
MwoI	GCNNNNNNNGC	3 cut(s)	416, 445, 479
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	890
NmuCI	GTSAC	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	327
PagI	TCATGA	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	3 cut(s)	686, 761, 827
PkrI	GCNGC	5 cut(s)	169, 196, 409, 865, 919
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	185, 801
PspGI	CCWGG	2 cut(s)	185, 801
PspN4I	GGNNCC	1 cut(s)	890
PspPI	GGNCC	2 cut(s)	437, 694
PsuI	RGATCY	1 cut(s)	989
RsaI	GTAC	2 cut(s)	155, 951
RsaNI	GTAC	2 cut(s)	154, 950
RseI	CAYNNNNRTG	2 cut(s)	188, 219
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	3 cut(s)	279, 498, 573
SatI	GCNGC	5 cut(s)	168, 195, 408, 864, 918
Sau3AI	GATC	6 cut(s)	122, 248, 333, 832, 850, 989
Sau96I	GGNCC	2 cut(s)	437, 694
ScaI	AGTACT	1 cut(s)	951
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	187, 803
SexAI	ACCWGGT	1 cut(s)	801
SfaNI	GCATC	4 cut(s)	201, 206, 460, 929
SfiI	GGCCNNNNNGGCC	1 cut(s)	445
SfuI	TTCGAA	1 cut(s)	327
SmiMI	CAYNNNNRTG	2 cut(s)	188, 219
SmlI	CTYRAG	2 cut(s)	173, 706
SmoI	CTYRAG	2 cut(s)	173, 706
Sse9I	AATT	4 cut(s)	109, 310, 362, 776
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	3 cut(s)	93, 608, 824
StyD4I	CCNGG	2 cut(s)	185, 801
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	3 cut(s)	341, 379, 884
TaqI	TCGA	6 cut(s)	102, 319, 327, 336, 357, 654
TasI	AATT	4 cut(s)	109, 310, 362, 776
TatI	WGTACW	1 cut(s)	949
TfiI	GAWTC	3 cut(s)	686, 761, 827
Tru1I	TTAA	3 cut(s)	279, 498, 573
Tru9I	TTAA	3 cut(s)	279, 498, 573
TscAI	CASTG	4 cut(s)	258, 346, 547, 889
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	5 cut(s)	167, 194, 407, 863, 917
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	4 cut(s)	59, 209, 516, 747
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	258, 346, 547, 889
XapI	RAATTY	2 cut(s)	362, 776
XbaI	TCTAGA	1 cut(s)	823
XmaJI	CCTAGG	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	3 cut(s)	93, 608, 824
ZrmI	AGTACT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.