MD02G1167700.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002583
Physical Location & Seq
Forward (+)
14371910 .. 14373237
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1167700.v1.1.491

Sequence Viewer

Length: 492 bp
ATGATCGTAGGATTTCTTCCTCATCTTTTGAGGCTTTACTTCCATGATTGCTTCGTTAATGGATGTGATGCATCACTGCTACTTGATGATACCAGCAGTTTTAAGGGGGAGAATAATGCAGCACCCAGCAAAAATTTAGCCAGAGGTTTTGAGGTCATTGACACAATCAAGTCAAAGGTTAAGGAAGCCTGTCCATCCACTGTTTCTTGCACTGACATAATCACTTTTGTATCAAGAGCAGCTGTTTATTTTCGGAGACCCATATATTGGCCAGTACCCTTGGGTCATAGAGATGGCACAACAGCAAGTGAAGATGCAGCTAATGAACAATTGACATCCCCCTTTGAGCCCTTGGAAAACATCACTGCAAGGTTCACAGCCAAAGGGCTAGAGATGGTTTTACTCAAAGTTTGCCCTACTTTAGAGTTTTTCTTTGTTATTGCTTTTAGGCTCAGAAATCTCAAGACCAGCCATGTTATAACGATCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

164

Amino Acids

18.2

Weight (kDa)

6.89

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 7 - 133 1.3e-37 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 267
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 242, 320
AluI AGCT 2 cut(s) 242, 320
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 1 cut(s) 478
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 119, 239, 317
ApoI RAATTY 1 cut(s) 133
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BalI TGGCCA 1 cut(s) 271
BanII GRGCYC 1 cut(s) 351
BarI GAAGNNNNNNTAC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 131, 251, 329
BccI CCATC 3 cut(s) 202, 287, 388
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 389
BisI GCNGC 3 cut(s) 120, 240, 318
BlsI GCNGC 3 cut(s) 121, 241, 319
BmsI GCATC 3 cut(s) 58, 80, 304
BpuEI CTTGAG 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 279, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 279, 351
BseGI GGATG 3 cut(s) 68, 194, 335
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 466
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 3 cut(s) 131, 251, 329
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 1 cut(s) 271
Bso31I GGTCTC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 3, 483
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 465
BspPI GGATC 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 279, 351
BssMI GATC 2 cut(s) 3, 483
BssT1I CCWWGG 2 cut(s) 279, 351
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 68, 194, 335
BstKTI GATC 2 cut(s) 6, 486
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 3, 483
BstV1I GCAGC 3 cut(s) 131, 251, 329
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 3 cut(s) 68, 194, 335
BtsI GCAGTG 2 cut(s) 74, 363
BtsIMutI CAGTG 4 cut(s) 74, 198, 210, 363
Csp6I GTAC 1 cut(s) 275
CviAII CATG 2 cut(s) 44, 473
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 5, 485
DpnII GATC 2 cut(s) 3, 483
EaeI YGGCCR 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 279, 351
Eco24I GRGCYC 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 279, 351
EcoT22I ATGCAT 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 279, 351
FaeI CATG 2 cut(s) 47, 476
FaiI YATR 7 cut(s) 45, 218, 263, 265, 288, 474, 479
FatI CATG 2 cut(s) 43, 472
Fnu4HI GCNGC 3 cut(s) 120, 240, 318
FokI GGATG 3 cut(s) 75, 181, 322
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 3 cut(s) 120, 240, 318
FspBI CTAG 1 cut(s) 389
GluI GCNGC 3 cut(s) 120, 240, 318
GsaI CCCAGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 2 cut(s) 47, 476
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 255, 455
Hpy188III TCNNGA 2 cut(s) 234, 463
Hpy8I GTNNAC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 5 cut(s) 71, 119, 210, 317, 368
HpyF3I CTNAG 1 cut(s) 452
Hsp92II CATG 2 cut(s) 47, 476
Kzo9I GATC 2 cut(s) 3, 483
LpnPI CCDG 6 cut(s) 106, 139, 154, 202, 285, 481
Lsp1109I GCAGC 3 cut(s) 131, 251, 329
LweI GCATC 3 cut(s) 58, 80, 304
MaeI CTAG 1 cut(s) 389
MalI GATC 2 cut(s) 5, 485
MboI GATC 2 cut(s) 3, 483
MboII GAAGA 2 cut(s) 8, 323
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 271
MluCI AATT 2 cut(s) 133, 329
MluNI TGGCCA 1 cut(s) 271
MnlI CCTC 4 cut(s) 24, 30, 137, 145
Mox20I TGGCCA 1 cut(s) 271
Mph1103I ATGCAT 1 cut(s) 73
MscI TGGCCA 1 cut(s) 271
MseI TTAA 4 cut(s) 57, 102, 180, 490
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 242
MunI CAATTG 1 cut(s) 329
NdeII GATC 2 cut(s) 3, 483
NlaIII CATG 2 cut(s) 47, 476
NsiI ATGCAT 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 3 cut(s) 121, 241, 319
PsiI TTATAA 1 cut(s) 479
PspFI CCCAGC 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 4 cut(s) 57, 102, 180, 490
SatI GCNGC 3 cut(s) 120, 240, 318
Sau3AI GATC 2 cut(s) 3, 483
SduI GDGCHC 1 cut(s) 351
SetI ASST 6 cut(s) 148, 156, 180, 244, 322, 374
SfaNI GCATC 3 cut(s) 58, 80, 304
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 2 cut(s) 133, 329
SspMI CTAG 1 cut(s) 389
StyI CCWWGG 2 cut(s) 279, 351
TaaI ACNGT 1 cut(s) 202
TasI AATT 2 cut(s) 133, 329
Tru1I TTAA 4 cut(s) 57, 102, 180, 490
Tru9I TTAA 4 cut(s) 57, 102, 180, 490
TscAI CASTG 4 cut(s) 81, 205, 217, 370
TseI GCWGC 3 cut(s) 119, 239, 317
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 4 cut(s) 81, 205, 217, 370
Van91I CCANNNNNTGG 1 cut(s) 267
XapI RAATTY 1 cut(s) 133
XspI CTAG 1 cut(s) 389
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.