RchiOBHm_Chr2g0104851

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002583
Physical Location & Seq
Forward (+)
16125416 .. 16127093
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47909

Sequence Viewer

Length: 936 bp
ATGATTAGAAACTTTGTTCACTTTCAACAAATGGAGTACATTACCCACAAGCTTTTCTATGTTGTCTTGCTTTGCCTCTTGTTCCTAAGCCCTCCTTTTGTTTCCTCTCAGCTCAATTATAAGTTCTATGATTCCTCTTGTCTCAACTTGAGCAAGATTGGATGTGACGCATCTATACTTCTTGACGATACTAGCACTCTTAAGGGGGAGAAAAATGCTTTGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATCAAGTTAGCACTGGAGGAAGCTTGCCCATGCACTGTTTCCTGTACTGACATACTCACTCTTGCTGCAACCTCAGCTGTTTATTTTAGCGGAGGGCCATATTGGCCTGTAGCACTGGGTCGCCGAGATTGCACAACAGCAAGTGAAGATGCAGCTAATGACGACTTGCCATCACCTTTTGAGCCCTTGGAAAACATGATAAACATCACTGCAAAGTTTGCAGCAAAAGGCCTTGATTTAAGGGATGTTGTTGTCCTCTCAGTTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGCTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCAAGCTGATTCTGATACCAAATTAGCTCCTCTTGATCCTGTCACTTCCAACAGGTTTGATAACGTTCACTTCAAAAGACTGGTGAACAAATCTGGGCCTCTACAGTCAGACGAGGTCCTTATGGGGGACAGTACAACTGCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAATATAGGTGTGCTTACTGGACAAAATGGACAAATTAGGAAGAATTGTAGGGTGGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

311

Amino Acids

34.3

Weight (kDa)

6.1

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 273 1e-62 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AciI CCGC 2 cut(s) 354, 608
AclI AACGTT 1 cut(s) 720
AclWI GGATC 1 cut(s) 686
AfaI GTAC 3 cut(s) 38, 310, 790
AfiI CCNNNNNNNGG 1 cut(s) 781
AflII CTTAAG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 6 cut(s) 26, 565, 580, 730, 801, 838
AluBI AGCT 8 cut(s) 52, 112, 287, 341, 419, 662, 683, 813
AluI AGCT 8 cut(s) 52, 112, 287, 341, 419, 662, 683, 813
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 4 cut(s) 359, 368, 493, 752
ApeKI GCWGC 3 cut(s) 329, 416, 485
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspS9I GGNCC 3 cut(s) 359, 752, 772
AsuHPI GGTGA 3 cut(s) 429, 751, 874
AvaI CYCGRG 1 cut(s) 592
AvaII GGWCC 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 450
BarI GAAGNNNNNNTAC 2 cut(s) 781, 813
BbvCI CCTCAGC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 316, 428, 497
BccI CCATC 2 cut(s) 442, 862
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 3 cut(s) 372, 758, 814
BfrI CTTAAG 1 cut(s) 200
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 3 cut(s) 330, 417, 486
BlsI GCNGC 3 cut(s) 331, 418, 487
Bme18I GGWCC 1 cut(s) 772
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 3 cut(s) 359, 752, 772
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 3 cut(s) 179, 403, 863
BmuI ACTGGG 1 cut(s) 389
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 2 cut(s) 86, 337
BpuEI CTTGAG 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse1I ACTGG 4 cut(s) 282, 384, 741, 895
Bse8I GATNNNNATC 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 2 cut(s) 167, 514
BseJI GATNNNNATC 1 cut(s) 467
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMII CTCAG 4 cut(s) 122, 351, 537, 563
BseNI ACTGG 4 cut(s) 282, 384, 741, 895
BseRI GAGGAG 1 cut(s) 675
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 3 cut(s) 316, 428, 497
BshFI GGCC 4 cut(s) 361, 370, 495, 754
BsiHKCI CYCGRG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 797
BsnI GGCC 4 cut(s) 361, 370, 495, 754
BsoBI CYCGRG 1 cut(s) 592
Bsp1286I GDGCHC 2 cut(s) 450, 653
Bsp143I GATC 1 cut(s) 691
BspACI CCGC 2 cut(s) 354, 608
BspANI GGCC 4 cut(s) 361, 370, 495, 754
BspCNI CTCAG 4 cut(s) 121, 350, 536, 562
BspPI GGATC 1 cut(s) 686
BspTI CTTAAG 1 cut(s) 200
BsrI ACTGG 4 cut(s) 282, 384, 741, 895
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 4 cut(s) 301, 576, 762, 788
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 289, 599
BstDEI CTNAG 5 cut(s) 86, 108, 337, 523, 549
BstF5I GGATG 2 cut(s) 167, 514
BstKTI GATC 1 cut(s) 694
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 1 cut(s) 691
BstMWI GCNNNNNNNGC 5 cut(s) 338, 367, 393, 482, 607
BstSFI CTRYAG 3 cut(s) 372, 758, 814
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 3 cut(s) 316, 428, 497
BsuRI GGCC 4 cut(s) 361, 370, 495, 754
BtsCI GGATG 2 cut(s) 167, 514
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 5 cut(s) 275, 297, 377, 471, 557
Cac8I GCNNGC 2 cut(s) 289, 599
Cfr13I GGNCC 3 cut(s) 359, 752, 772
CseI GACGC 1 cut(s) 176
Csp6I GTAC 3 cut(s) 37, 309, 789
CviAII CATG 2 cut(s) 294, 460
CviQI GTAC 3 cut(s) 37, 309, 789
DdeI CTNAG 5 cut(s) 86, 108, 337, 523, 549
DpnI GATC 1 cut(s) 693
DpnII GATC 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 772
Eco88I CYCGRG 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 2 cut(s) 297, 463
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 797
FatI CATG 2 cut(s) 293, 459
FauI CCCGC 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 330, 417, 486
FokI GGATG 2 cut(s) 174, 521
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 3 cut(s) 330, 417, 486
FspBI CTAG 1 cut(s) 192
GluI GCNGC 3 cut(s) 330, 417, 486
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 4 cut(s) 361, 370, 495, 754
HgaI GACGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 297, 463
HindIII AAGCTT 2 cut(s) 50, 285
HinfI GANTC 4 cut(s) 131, 233, 590, 665
HphI GGTGA 3 cut(s) 429, 751, 874
Hpy166II GTNNAC 3 cut(s) 19, 724, 742
Hpy188I TCNGA 3 cut(s) 242, 670, 766
Hpy188III TCNNGA 3 cut(s) 182, 565, 689
Hpy8I GTNNAC 3 cut(s) 19, 724, 742
HpyCH4III ACNGT 4 cut(s) 301, 576, 762, 788
HpyCH4IV ACGT 2 cut(s) 645, 720
HpyCH4V TGCA 7 cut(s) 297, 332, 396, 416, 476, 485, 530
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 367, 393, 482, 607
HpyF3I CTNAG 5 cut(s) 86, 108, 337, 523, 549
HpySE526I ACGT 2 cut(s) 645, 720
Hsp92II CATG 2 cut(s) 297, 463
Kzo9I GATC 1 cut(s) 691
LmnI GCTCC 2 cut(s) 688, 851
Lsp1109I GCAGC 3 cut(s) 316, 428, 497
LweI GCATC 3 cut(s) 179, 403, 863
MaeI CTAG 1 cut(s) 192
MaeII ACGT 2 cut(s) 645, 720
MaeIII GTNAC 3 cut(s) 164, 587, 697
MalI GATC 1 cut(s) 693
MboI GATC 1 cut(s) 691
MboII GAAGA 3 cut(s) 422, 877, 925
MhlI GDGCHC 2 cut(s) 450, 653
MluCI AATT 5 cut(s) 115, 677, 906, 916, 931
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 729
MseI TTAA 2 cut(s) 201, 503
MspA1I CMGCKG 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 338, 367, 393, 482, 607
NdeII GATC 1 cut(s) 691
NlaIII CATG 2 cut(s) 297, 463
NmeAIII GCCGAG 1 cut(s) 413
NmuCI GTSAC 3 cut(s) 164, 587, 697
PceI AGGCCT 1 cut(s) 495
PfeI GAWTC 3 cut(s) 131, 233, 665
PflFI GACNNNGTC 1 cut(s) 770
PkrI GCNGC 3 cut(s) 331, 418, 487
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PpuMI RGGWCCY 1 cut(s) 772
PsiI TTATAA 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 772
PspPI GGNCC 3 cut(s) 359, 752, 772
PspPPI RGGWCCY 1 cut(s) 772
PsyI GACNNNGTC 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 3 cut(s) 38, 310, 790
RsaNI GTAC 3 cut(s) 37, 309, 789
SaqAI TTAA 2 cut(s) 201, 503
SatI GCNGC 3 cut(s) 330, 417, 486
Sau3AI GATC 1 cut(s) 691
Sau96I GGNCC 3 cut(s) 359, 752, 772
SchI GAGTC 1 cut(s) 584
SduI GDGCHC 2 cut(s) 450, 653
SfaNI GCATC 3 cut(s) 179, 403, 863
SfcI CTRYAG 3 cut(s) 372, 758, 814
SfiI GGCCNNNNNGGCC 1 cut(s) 367
SinI GGWCC 1 cut(s) 772
SmlI CTYRAG 2 cut(s) 148, 200
SmoI CTYRAG 2 cut(s) 148, 200
Sse9I AATT 5 cut(s) 115, 677, 906, 916, 931
SseBI AGGCCT 1 cut(s) 495
SsiI CCGC 2 cut(s) 354, 608
SspMI CTAG 1 cut(s) 192
StuI AGGCCT 1 cut(s) 495
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 4 cut(s) 301, 576, 762, 788
TaiI ACGT 2 cut(s) 648, 723
TasI AATT 5 cut(s) 115, 677, 906, 916, 931
TatI WGTACW 3 cut(s) 36, 308, 788
TfiI GAWTC 3 cut(s) 131, 233, 665
Tru1I TTAA 2 cut(s) 201, 503
Tru9I TTAA 2 cut(s) 201, 503
TscAI CASTG 5 cut(s) 282, 304, 384, 478, 557
TseFI GTSAC 3 cut(s) 164, 587, 697
TseI GCWGC 3 cut(s) 329, 416, 485
Tsp45I GTSAC 3 cut(s) 164, 587, 697
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 5 cut(s) 282, 304, 384, 478, 557
Tth111I GACNNNGTC 1 cut(s) 770
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 772
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.