Rh2CG178600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002583
Physical Location & Seq
Forward (+)
16368836 .. 16370483
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG178600.1

Sequence Viewer

Length: 906 bp
ATGGAGTACATTACCCACAAGCTTTTCTATGTTGTCTTGCTTTGCCTCTTGTTCCTAAGCCCTCCTTTTGTTTCCTCTCAGCTCAATTATAAGTTCTATGATTCCTCTTGTCTCAACTTGAGCAAGATTGGATGTGACGCATCTATACTTCTTGACGATACTAGCACTCTTAAGGGGGAGAAAAATGCTTTGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATCAAGTTAGCACTGGAGGAAGCTTGCCCATGCACTGTTTCCTGTACTGACATACTCACTCTTGCTGCAACCTCAGCTGTTTATTTTAGCGGAGGGCCATATTGGCCTGTAGCACTGGGTCGCCGAGATTGCACAACAGCAAGTGAAGATGCAGCTAATGACGACTTGCCATCACCTTTTGAGCCCTTGGAAAACATGATAAACATCACTGCAAAGTTTGCAGCAAAAGGCCTTGATTTAAGGGATGTTGTTGTCCTCTCAGTTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGCTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCAAGCTGATTCTGATACCAAATTAGCTCCTCTTGATCCTGTCACTTCCAACAGGTTTGATAACGTTCACTTCAAAAGACTGGTGAACAAATCTGGGCCTCTACAGTCAGACGAGGTCCTTATGGGGGACAGTACAACTGCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAATATAGGTGTGCTTACTGGACAAAATGGACAAATTAGGAAGAATTGTAGGGTGGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

301

Amino Acids

33.0

Weight (kDa)

5.68

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 263 1e-62 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AciI CCGC 2 cut(s) 324, 578
AclI AACGTT 1 cut(s) 690
AclWI GGATC 1 cut(s) 656
AfaI GTAC 3 cut(s) 8, 280, 760
AfiI CCNNNNNNNGG 1 cut(s) 751
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 5 cut(s) 535, 550, 700, 771, 808
AluBI AGCT 8 cut(s) 22, 82, 257, 311, 389, 632, 653, 783
AluI AGCT 8 cut(s) 22, 82, 257, 311, 389, 632, 653, 783
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 562
AoxI GGCC 4 cut(s) 329, 338, 463, 722
ApeKI GCWGC 3 cut(s) 299, 386, 455
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AspS9I GGNCC 3 cut(s) 329, 722, 742
AsuHPI GGTGA 3 cut(s) 399, 721, 844
AvaI CYCGRG 1 cut(s) 562
AvaII GGWCC 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 420
BarI GAAGNNNNNNTAC 2 cut(s) 751, 783
BbvCI CCTCAGC 1 cut(s) 307
BbvI GCAGC 3 cut(s) 286, 398, 467
BccI CCATC 2 cut(s) 412, 832
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 3 cut(s) 342, 728, 784
BfrI CTTAAG 1 cut(s) 170
BglI GCCNNNNNGGC 1 cut(s) 337
BisI GCNGC 3 cut(s) 300, 387, 456
BlsI GCNGC 3 cut(s) 301, 388, 457
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 3 cut(s) 329, 722, 742
BmrI ACTGGG 1 cut(s) 359
BmsI GCATC 3 cut(s) 149, 373, 833
BmuI ACTGGG 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 2 cut(s) 56, 307
BpuEI CTTGAG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 751
Bse1I ACTGG 4 cut(s) 252, 354, 711, 865
Bse8I GATNNNNATC 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 2 cut(s) 137, 484
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 751
BseMII CTCAG 4 cut(s) 92, 321, 507, 533
BseNI ACTGG 4 cut(s) 252, 354, 711, 865
BseRI GAGGAG 1 cut(s) 645
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 3 cut(s) 286, 398, 467
BshFI GGCC 4 cut(s) 331, 340, 465, 724
BsiHKCI CYCGRG 1 cut(s) 562
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 751
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 4 cut(s) 331, 340, 465, 724
BsoBI CYCGRG 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 420, 623
Bsp143I GATC 1 cut(s) 661
BspACI CCGC 2 cut(s) 324, 578
BspANI GGCC 4 cut(s) 331, 340, 465, 724
BspCNI CTCAG 4 cut(s) 91, 320, 506, 532
BspPI GGATC 1 cut(s) 656
BspTI CTTAAG 1 cut(s) 170
BsrI ACTGG 4 cut(s) 252, 354, 711, 865
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 661
BssT1I CCWWGG 1 cut(s) 420
Bst4CI ACNGT 4 cut(s) 271, 546, 732, 758
BstAFI CTTAAG 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 259, 569
BstDEI CTNAG 5 cut(s) 56, 78, 307, 493, 519
BstF5I GGATG 2 cut(s) 137, 484
BstKTI GATC 1 cut(s) 664
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 661
BstMWI GCNNNNNNNGC 5 cut(s) 308, 337, 363, 452, 577
BstSFI CTRYAG 3 cut(s) 342, 728, 784
BstSLI GKGCMC 1 cut(s) 623
BstV1I GCAGC 3 cut(s) 286, 398, 467
BsuRI GGCC 4 cut(s) 331, 340, 465, 724
BtsCI GGATG 2 cut(s) 137, 484
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 5 cut(s) 245, 267, 347, 441, 527
Cac8I GCNNGC 2 cut(s) 259, 569
Cfr13I GGNCC 3 cut(s) 329, 722, 742
CseI GACGC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 7, 279, 759
CviAII CATG 2 cut(s) 264, 430
CviQI GTAC 3 cut(s) 7, 279, 759
DdeI CTNAG 5 cut(s) 56, 78, 307, 493, 519
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
Eco130I CCWWGG 1 cut(s) 420
Eco147I AGGCCT 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 2 cut(s) 267, 433
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 767
FatI CATG 2 cut(s) 263, 429
FauI CCCGC 1 cut(s) 585
Fnu4HI GCNGC 3 cut(s) 300, 387, 456
FokI GGATG 2 cut(s) 144, 491
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 3 cut(s) 300, 387, 456
FspBI CTAG 1 cut(s) 162
GluI GCNGC 3 cut(s) 300, 387, 456
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 4 cut(s) 331, 340, 465, 724
HgaI GACGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 267, 433
HindIII AAGCTT 2 cut(s) 20, 255
HinfI GANTC 4 cut(s) 101, 203, 560, 635
HphI GGTGA 3 cut(s) 399, 721, 844
Hpy166II GTNNAC 2 cut(s) 694, 712
Hpy188I TCNGA 3 cut(s) 212, 640, 736
Hpy188III TCNNGA 3 cut(s) 152, 535, 659
Hpy8I GTNNAC 2 cut(s) 694, 712
HpyCH4III ACNGT 4 cut(s) 271, 546, 732, 758
HpyCH4IV ACGT 2 cut(s) 615, 690
HpyCH4V TGCA 7 cut(s) 267, 302, 366, 386, 446, 455, 500
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 337, 363, 452, 577
HpyF3I CTNAG 5 cut(s) 56, 78, 307, 493, 519
HpySE526I ACGT 2 cut(s) 615, 690
Hsp92II CATG 2 cut(s) 267, 433
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 2 cut(s) 658, 821
Lsp1109I GCAGC 3 cut(s) 286, 398, 467
LweI GCATC 3 cut(s) 149, 373, 833
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 615, 690
MaeIII GTNAC 3 cut(s) 134, 557, 667
MalI GATC 1 cut(s) 663
MboI GATC 1 cut(s) 661
MboII GAAGA 3 cut(s) 392, 847, 895
MhlI GDGCHC 2 cut(s) 420, 623
MluCI AATT 5 cut(s) 85, 647, 876, 886, 901
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 699
MseI TTAA 2 cut(s) 171, 473
MspA1I CMGCKG 1 cut(s) 311
MspCI CTTAAG 1 cut(s) 170
MwoI GCNNNNNNNGC 5 cut(s) 308, 337, 363, 452, 577
NdeII GATC 1 cut(s) 661
NlaIII CATG 2 cut(s) 267, 433
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 3 cut(s) 134, 557, 667
PceI AGGCCT 1 cut(s) 465
PfeI GAWTC 3 cut(s) 101, 203, 635
PflFI GACNNNGTC 1 cut(s) 740
PkrI GCNGC 3 cut(s) 301, 388, 457
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 742
PsiI TTATAA 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 742
PspPI GGNCC 3 cut(s) 329, 722, 742
PspPPI RGGWCCY 1 cut(s) 742
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 3 cut(s) 8, 280, 760
RsaNI GTAC 3 cut(s) 7, 279, 759
SaqAI TTAA 2 cut(s) 171, 473
SatI GCNGC 3 cut(s) 300, 387, 456
Sau3AI GATC 1 cut(s) 661
Sau96I GGNCC 3 cut(s) 329, 722, 742
SchI GAGTC 1 cut(s) 554
SduI GDGCHC 2 cut(s) 420, 623
SfaNI GCATC 3 cut(s) 149, 373, 833
SfcI CTRYAG 3 cut(s) 342, 728, 784
SfiI GGCCNNNNNGGCC 1 cut(s) 337
SinI GGWCC 1 cut(s) 742
SmlI CTYRAG 2 cut(s) 118, 170
SmoI CTYRAG 2 cut(s) 118, 170
Sse9I AATT 5 cut(s) 85, 647, 876, 886, 901
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 2 cut(s) 324, 578
SspMI CTAG 1 cut(s) 162
StuI AGGCCT 1 cut(s) 465
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 4 cut(s) 271, 546, 732, 758
TaiI ACGT 2 cut(s) 618, 693
TasI AATT 5 cut(s) 85, 647, 876, 886, 901
TatI WGTACW 3 cut(s) 6, 278, 758
TfiI GAWTC 3 cut(s) 101, 203, 635
Tru1I TTAA 2 cut(s) 171, 473
Tru9I TTAA 2 cut(s) 171, 473
TscAI CASTG 5 cut(s) 252, 274, 354, 448, 527
TseFI GTSAC 3 cut(s) 134, 557, 667
TseI GCWGC 3 cut(s) 299, 386, 455
Tsp45I GTSAC 3 cut(s) 134, 557, 667
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 5 cut(s) 252, 274, 354, 448, 527
Tth111I GACNNNGTC 1 cut(s) 740
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 742
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.