Rw2G013660

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002583
Physical Location & Seq
Forward (+)
14784595 .. 14786211
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013660.1

Sequence Viewer

Length: 987 bp
ATGGAGTACATTACCCACAAGCTTTTCTATGTTGTCTTGCTTTGCCTCTTGTTCCTAAGCCCTCCTTTTGTTTCCTCTCAGCTCAATTATAAGTTCTATGATTCCTCTTGTCCCAACTTGAGCAAGATTGTTCAACAAGGCGTTCGGTCTGCTATTGCAAATGATTCTAGGATTGCAGCCTCACTCTTGCGGCTTCACTTCCATGATTGCTTTGTTAATGGATGTGACGCATCTATACTTCTTGACGATACTAGCACACTTAAGGGGGAGAAAAATGCTTTGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATAAAGTTAGCACTGGAGGAAGCTTGCCCATGCACTGTTTCCTGTACTGACATACTCACTCTTGCTGCAACCTCAGCTGTTTATTTTAGCGGAGGGCCATATTGGCCTGTAGCACTGGGACGCCGAGATGGCACAACAGCAAGTGAAGATGCAGCTAATGACGACTTGCCATCACCTTTTGAGCCCTTGGAAAACATCACTGCAAAGTTTGCAGCAAAAGGCCTTAATTTAAGGGATGTTGTTGTCCTCTCAGGTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGGTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCAAGCTGATTCTGATACCAAATTGGCTCCACTTGATCCTGTCACTTCCAACAGGTTTGATAACGTTTACTTCAATAGACTGGTGAACAAATCAGGGCTTCTACAGTCAGACCAGGTCCTTATGGGGGACAGTACGACTGCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAATATAGGTGTGCTTACTGGACAAAATGGACAAATCAGGAAGAATTGTAGGGTGGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

35.87

Weight (kDa)

6.42

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 290 2.4e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AciI CCGC 2 cut(s) 190, 414
AclI AACGTT 1 cut(s) 771
AclWI GGATC 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 445
AfaI GTAC 3 cut(s) 8, 370, 841
AfiI CCNNNNNNNGG 1 cut(s) 832
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 6 cut(s) 134, 616, 631, 781, 852, 889
AjnI CCWGG 1 cut(s) 819
AluBI AGCT 7 cut(s) 22, 82, 347, 401, 479, 713, 864
AluI AGCT 7 cut(s) 22, 82, 347, 401, 479, 713, 864
Alw21I GWGCWC 1 cut(s) 583
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 3 cut(s) 419, 428, 544
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 4 cut(s) 176, 389, 476, 536
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspS9I GGNCC 2 cut(s) 419, 823
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 3 cut(s) 489, 802, 925
AvaI CYCGRG 1 cut(s) 643
AvaII GGWCC 1 cut(s) 823
BaeGI GKGCMC 2 cut(s) 583, 704
BanII GRGCYC 1 cut(s) 510
BarI GAAGNNNNNNTAC 2 cut(s) 832, 864
Bbv12I GWGCWC 1 cut(s) 583
BbvCI CCTCAGC 1 cut(s) 397
BbvI GCAGC 4 cut(s) 188, 376, 488, 548
BccI CCATC 3 cut(s) 446, 502, 913
BciT130I CCWGG 1 cut(s) 821
BcnI CCSGG 1 cut(s) 659
BfaI CTAG 2 cut(s) 168, 252
BfmI CTRYAG 3 cut(s) 432, 809, 865
BfrI CTTAAG 1 cut(s) 260
BglI GCCNNNNNGGC 2 cut(s) 427, 453
BisI GCNGC 5 cut(s) 177, 191, 390, 477, 537
BlsI GCNGC 5 cut(s) 178, 192, 391, 478, 538
Bme1390I CCNGG 2 cut(s) 659, 821
Bme18I GGWCC 1 cut(s) 823
BmeT110I CYCGRG 1 cut(s) 643
BmgT120I GGNCC 2 cut(s) 419, 823
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 2 cut(s) 659, 821
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 3 cut(s) 239, 463, 914
BmuI ACTGGG 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 359
Bpu10I CCTNAGC 2 cut(s) 56, 397
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 659
BsaHI GRCGYC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 510
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse1I ACTGG 4 cut(s) 342, 444, 792, 946
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 2 cut(s) 227, 565
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMII CTCAG 4 cut(s) 92, 411, 588, 614
BseNI ACTGG 4 cut(s) 342, 444, 792, 946
BseSI GKGCMC 2 cut(s) 583, 704
BseXI GCAGC 4 cut(s) 188, 376, 488, 548
BshFI GGCC 3 cut(s) 421, 430, 546
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 643
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 3 cut(s) 96, 456, 848
BslI CCNNNNNNNGG 1 cut(s) 832
BsmFI GGGAC 3 cut(s) 96, 456, 848
BsnI GGCC 3 cut(s) 421, 430, 546
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 3 cut(s) 510, 583, 704
Bsp143I GATC 1 cut(s) 742
BspACI CCGC 2 cut(s) 190, 414
BspANI GGCC 3 cut(s) 421, 430, 546
BspCNI CTCAG 4 cut(s) 91, 410, 587, 613
BspLI GGNNCC 1 cut(s) 735
BspPI GGATC 1 cut(s) 737
BspTI CTTAAG 1 cut(s) 260
BsrI ACTGG 4 cut(s) 342, 444, 792, 946
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 1 cut(s) 742
BssNI GRCGYC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 4 cut(s) 361, 627, 813, 839
BstACI GRCGYC 1 cut(s) 445
BstAFI CTTAAG 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 349, 650
BstDEI CTNAG 5 cut(s) 56, 78, 397, 574, 600
BstF5I GGATG 2 cut(s) 227, 565
BstKTI GATC 1 cut(s) 745
BstMBI GATC 1 cut(s) 742
BstMWI GCNNNNNNNGC 4 cut(s) 398, 427, 453, 533
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 657, 819
BstSFI CTRYAG 3 cut(s) 432, 809, 865
BstSLI GKGCMC 2 cut(s) 583, 704
BstV1I GCAGC 4 cut(s) 188, 376, 488, 548
BsuRI GGCC 3 cut(s) 421, 430, 546
BtsCI GGATG 2 cut(s) 227, 565
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 5 cut(s) 335, 357, 437, 522, 608
Cac8I GCNNGC 2 cut(s) 349, 650
Cfr13I GGNCC 2 cut(s) 419, 823
CseI GACGC 2 cut(s) 236, 453
CsiI ACCWGGT 1 cut(s) 819
Csp6I GTAC 3 cut(s) 7, 369, 840
CviAII CATG 2 cut(s) 203, 354
CviQI GTAC 3 cut(s) 7, 369, 840
DdeI CTNAG 5 cut(s) 56, 78, 397, 574, 600
DpnI GATC 1 cut(s) 744
DpnII GATC 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 510
Eco147I AGGCCT 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 823
Eco88I CYCGRG 1 cut(s) 643
EcoO109I RGGNCCY 1 cut(s) 823
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 2 cut(s) 206, 357
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 3 cut(s) 96, 456, 848
FatI CATG 2 cut(s) 202, 353
Fnu4HI GCNGC 5 cut(s) 177, 191, 390, 477, 537
FokI GGATG 2 cut(s) 234, 572
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 5 cut(s) 177, 191, 390, 477, 537
FspBI CTAG 2 cut(s) 168, 252
GluI GCNGC 5 cut(s) 177, 191, 390, 477, 537
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 3 cut(s) 421, 430, 546
HapII CCGG 1 cut(s) 659
HgaI GACGC 2 cut(s) 236, 453
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 2 cut(s) 206, 357
HindIII AAGCTT 2 cut(s) 20, 345
HinfI GANTC 5 cut(s) 101, 164, 293, 641, 716
HpaII CCGG 1 cut(s) 659
HphI GGTGA 3 cut(s) 489, 802, 925
Hpy166II GTNNAC 3 cut(s) 581, 775, 793
Hpy188I TCNGA 3 cut(s) 302, 721, 817
Hpy188III TCNNGA 3 cut(s) 242, 616, 961
Hpy8I GTNNAC 3 cut(s) 581, 775, 793
HpyCH4III ACNGT 4 cut(s) 361, 627, 813, 839
HpyCH4IV ACGT 2 cut(s) 696, 771
HpyCH4V TGCA 8 cut(s) 158, 176, 357, 392, 476, 527, 536, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 398, 427, 453, 533
HpyF3I CTNAG 5 cut(s) 56, 78, 397, 574, 600
HpySE526I ACGT 2 cut(s) 696, 771
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 2 cut(s) 206, 357
Kzo9I GATC 1 cut(s) 742
LmnI GCTCC 2 cut(s) 739, 902
Lsp1109I GCAGC 4 cut(s) 188, 376, 488, 548
LweI GCATC 3 cut(s) 239, 463, 914
MabI ACCWGGT 1 cut(s) 819
MaeI CTAG 2 cut(s) 168, 252
MaeII ACGT 2 cut(s) 696, 771
MaeIII GTNAC 3 cut(s) 224, 638, 748
MalI GATC 1 cut(s) 744
MboI GATC 1 cut(s) 742
MboII GAAGA 3 cut(s) 482, 928, 976
MhlI GDGCHC 3 cut(s) 510, 583, 704
MluCI AATT 5 cut(s) 85, 550, 728, 967, 982
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 780
MseI TTAA 4 cut(s) 216, 261, 549, 554
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 401
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 2 cut(s) 659, 821
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 4 cut(s) 398, 427, 453, 533
NciI CCSGG 1 cut(s) 659
NdeII GATC 1 cut(s) 742
NlaIII CATG 2 cut(s) 206, 357
NlaIV GGNNCC 1 cut(s) 735
NmeAIII GCCGAG 1 cut(s) 473
NmuCI GTSAC 3 cut(s) 224, 638, 748
PceI AGGCCT 1 cut(s) 546
PfeI GAWTC 4 cut(s) 101, 164, 293, 716
PflFI GACNNNGTC 1 cut(s) 821
PkrI GCNGC 5 cut(s) 178, 192, 391, 478, 538
PleI GAGTC 1 cut(s) 635
PpsI GAGTC 1 cut(s) 635
PpuMI RGGWCCY 1 cut(s) 823
PsiI TTATAA 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 771
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 1 cut(s) 819
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 2 cut(s) 419, 823
PspPPI RGGWCCY 1 cut(s) 823
PsyI GACNNNGTC 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 8, 370, 841
RsaNI GTAC 3 cut(s) 7, 369, 840
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 4 cut(s) 216, 261, 549, 554
SatI GCNGC 5 cut(s) 177, 191, 390, 477, 537
Sau3AI GATC 1 cut(s) 742
Sau96I GGNCC 2 cut(s) 419, 823
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 2 cut(s) 659, 821
SduI GDGCHC 3 cut(s) 510, 583, 704
SexAI ACCWGGT 1 cut(s) 819
SfaNI GCATC 3 cut(s) 239, 463, 914
SfcI CTRYAG 3 cut(s) 432, 809, 865
SfiI GGCCNNNNNGGCC 1 cut(s) 427
SinI GGWCC 1 cut(s) 823
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 118, 260
SmoI CTYRAG 2 cut(s) 118, 260
Sse9I AATT 5 cut(s) 85, 550, 728, 967, 982
SseBI AGGCCT 1 cut(s) 546
SsiI CCGC 2 cut(s) 190, 414
SspMI CTAG 2 cut(s) 168, 252
StuI AGGCCT 1 cut(s) 546
StyD4I CCNGG 2 cut(s) 657, 819
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 4 cut(s) 361, 627, 813, 839
TaiI ACGT 2 cut(s) 699, 774
TaqII GACCGA 1 cut(s) 135
TasI AATT 5 cut(s) 85, 550, 728, 967, 982
TatI WGTACW 2 cut(s) 6, 368
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 4 cut(s) 101, 164, 293, 716
Tru1I TTAA 4 cut(s) 216, 261, 549, 554
Tru9I TTAA 4 cut(s) 216, 261, 549, 554
TscAI CASTG 5 cut(s) 342, 364, 444, 529, 608
TseFI GTSAC 3 cut(s) 224, 638, 748
TseI GCWGC 4 cut(s) 176, 389, 476, 536
Tsp45I GTSAC 3 cut(s) 224, 638, 748
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 5 cut(s) 342, 364, 444, 529, 608
Tth111I GACNNNGTC 1 cut(s) 821
Vha464I CTTAAG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 823
XspI CTAG 2 cut(s) 168, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.