Rh2AG173600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002583
Physical Location & Seq
Forward (+)
16547194 .. 16549460
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG173600.1

Sequence Viewer

Length: 816 bp
ATGAAACTTGGGTCACCATTGTTGTCAACAACAACTAAACTTATCATAGGATGTGACGCATCTATACTTCTTGACGATACTAGCACACTTAAGGGGGAGAAAAATGCTTTGCCCAACAAAGATTCAGTCAGAGGCTATGAAGTGATTGACAAAATCAAGTTAGCACTGGAGGAAGCTTGCCCATGCACTGTTTCCTGTACTGACATACTCACTCTTGCTGCAACCTCAGCTGTTTATTTTAGCGGAGGGCCATATTGGCCTGTAGCACTGGGTCGCCGAGATGGCACAACAGCAAGTGAAGATGCAGCTAATGACGACTTGCCATCACCTTTTGAGCCCTTGGAAAACATCACTGCAAAGTTTGCAGCAAAAGGCCTTAATTTAAGGGATGTTGTTGTCCTCTCAGGTGCACACACCATAGGCTTTGCTCAGTGCTTCACATTCAAGACAAGACTGTTCAACTTTAGTGACTCGGGCAAGCCTGACCCGGTATTAGACACATCACTTCTAACAAAACTACAAAACGTGTGCCCAAATCAAGCTGATTCTGATACCAAATTGGCTCCACTTGATCTTGTCACTTCCAACAGGTTTGATAACGTTTACTTCAAAAGACTGGTGAACAAATCAGGGCTTCTACAGTCAGACCAGGTCCTTATGGGGGACAGTACAACTGCTTCAATGGTCATCAGCTATAGCAGATTTCCAAATCTGTTCAACAAGGACTTTGGAGCATCAATGGTGAAGATGGCAAATATAGGTGTGCTTACTGGACAAAATGGACAAATTAGGAAGAATTGTAGGGTGGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

271

Amino Acids

29.23

Weight (kDa)

6.58

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 17 - 233 3e-69 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AclI AACGTT 1 cut(s) 600
AfaI GTAC 2 cut(s) 199, 670
AfiI CCNNNNNNNGG 1 cut(s) 661
AflII CTTAAG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 5 cut(s) 445, 460, 610, 681, 718
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 5 cut(s) 176, 230, 308, 542, 693
AluI AGCT 5 cut(s) 176, 230, 308, 542, 693
Alw21I GWGCWC 1 cut(s) 412
Alw44I GTGCAC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 3 cut(s) 248, 257, 373
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 3 cut(s) 218, 305, 365
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspS9I GGNCC 2 cut(s) 248, 652
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 4 cut(s) 6, 318, 631, 754
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 2 cut(s) 412, 533
BanII GRGCYC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 661, 693
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 226
BbvI GCAGC 3 cut(s) 205, 317, 377
BccI CCATC 3 cut(s) 275, 331, 742
BciT130I CCWGG 1 cut(s) 650
BcnI CCSGG 1 cut(s) 488
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 3 cut(s) 261, 638, 694
BfrI CTTAAG 1 cut(s) 89
BglI GCCNNNNNGGC 2 cut(s) 256, 282
BisI GCNGC 3 cut(s) 219, 306, 366
BlsI GCNGC 3 cut(s) 220, 307, 367
Bme1390I CCNGG 2 cut(s) 488, 650
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 248, 652
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 2 cut(s) 488, 650
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 3 cut(s) 68, 292, 743
BmuI ACTGGG 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 661
Bse1I ACTGG 4 cut(s) 171, 273, 621, 775
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 56, 394
BseLI CCNNNNNNNGG 1 cut(s) 661
BseMII CTCAG 3 cut(s) 240, 417, 443
BseNI ACTGG 4 cut(s) 171, 273, 621, 775
BseSI GKGCMC 2 cut(s) 412, 533
BseXI GCAGC 3 cut(s) 205, 317, 377
BshFI GGCC 3 cut(s) 250, 259, 375
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 661
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 3 cut(s) 250, 259, 375
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 339, 412, 533
Bsp143I GATC 1 cut(s) 571
BspACI CCGC 1 cut(s) 243
BspANI GGCC 3 cut(s) 250, 259, 375
BspCNI CTCAG 3 cut(s) 239, 416, 442
BspLI GGNNCC 1 cut(s) 564
BspTI CTTAAG 1 cut(s) 89
BsrI ACTGG 4 cut(s) 171, 273, 621, 775
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 571
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 4 cut(s) 190, 456, 642, 668
BstAFI CTTAAG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 178, 479
BstDEI CTNAG 3 cut(s) 226, 403, 429
BstEII GGTNACC 1 cut(s) 12
BstF5I GGATG 2 cut(s) 56, 394
BstKTI GATC 1 cut(s) 574
BstMBI GATC 1 cut(s) 571
BstMWI GCNNNNNNNGC 4 cut(s) 227, 256, 282, 362
BstNI CCWGG 1 cut(s) 650
BstPI GGTNACC 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 486, 648
BstSFI CTRYAG 3 cut(s) 261, 638, 694
BstSLI GKGCMC 2 cut(s) 412, 533
BstV1I GCAGC 3 cut(s) 205, 317, 377
BsuRI GGCC 3 cut(s) 250, 259, 375
BtsCI GGATG 2 cut(s) 56, 394
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 5 cut(s) 164, 186, 266, 351, 437
Cac8I GCNNGC 2 cut(s) 178, 479
Cfr13I GGNCC 2 cut(s) 248, 652
CseI GACGC 1 cut(s) 65
CsiI ACCWGGT 1 cut(s) 648
Csp6I GTAC 2 cut(s) 198, 669
CviAII CATG 1 cut(s) 183
CviQI GTAC 2 cut(s) 198, 669
DdeI CTNAG 3 cut(s) 226, 403, 429
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 652
Eco88I CYCGRG 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 186
FaqI GGGAC 1 cut(s) 677
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 3 cut(s) 219, 306, 366
FokI GGATG 2 cut(s) 63, 401
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 3 cut(s) 219, 306, 366
FspBI CTAG 1 cut(s) 81
GluI GCNGC 3 cut(s) 219, 306, 366
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 3 cut(s) 250, 259, 375
HapII CCGG 1 cut(s) 488
HgaI GACGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 186
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 3 cut(s) 122, 470, 545
HpaII CCGG 1 cut(s) 488
HphI GGTGA 4 cut(s) 6, 318, 631, 754
Hpy166II GTNNAC 4 cut(s) 27, 410, 604, 622
Hpy188I TCNGA 3 cut(s) 131, 550, 646
Hpy188III TCNNGA 2 cut(s) 71, 445
Hpy8I GTNNAC 4 cut(s) 27, 410, 604, 622
HpyCH4III ACNGT 4 cut(s) 190, 456, 642, 668
HpyCH4IV ACGT 2 cut(s) 525, 600
HpyCH4V TGCA 6 cut(s) 186, 221, 305, 356, 365, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 256, 282, 362
HpyF3I CTNAG 3 cut(s) 226, 403, 429
HpySE526I ACGT 2 cut(s) 525, 600
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 2 cut(s) 568, 731
Lsp1109I GCAGC 3 cut(s) 205, 317, 377
LweI GCATC 3 cut(s) 68, 292, 743
MabI ACCWGGT 1 cut(s) 648
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 525, 600
MaeIII GTNAC 4 cut(s) 12, 53, 467, 577
MalI GATC 1 cut(s) 573
MboI GATC 1 cut(s) 571
MboII GAAGA 3 cut(s) 311, 757, 805
MhlI GDGCHC 3 cut(s) 339, 412, 533
MluCI AATT 5 cut(s) 379, 557, 786, 796, 811
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 5 cut(s) 125, 163, 235, 239, 410
MseI TTAA 3 cut(s) 90, 378, 383
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 2 cut(s) 488, 650
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 4 cut(s) 227, 256, 282, 362
NciI CCSGG 1 cut(s) 488
NdeII GATC 1 cut(s) 571
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 564
NmeAIII GCCGAG 1 cut(s) 302
NmuCI GTSAC 4 cut(s) 12, 53, 467, 577
PceI AGGCCT 1 cut(s) 375
PfeI GAWTC 2 cut(s) 122, 545
PflFI GACNNNGTC 1 cut(s) 650
PkrI GCNGC 3 cut(s) 220, 307, 367
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
PpuMI RGGWCCY 1 cut(s) 652
Psp1406I AACGTT 1 cut(s) 600
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 648
PspEI GGTNACC 1 cut(s) 12
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 2 cut(s) 248, 652
PspPPI RGGWCCY 1 cut(s) 652
PsyI GACNNNGTC 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 2 cut(s) 199, 670
RsaNI GTAC 2 cut(s) 198, 669
SaqAI TTAA 3 cut(s) 90, 378, 383
SatI GCNGC 3 cut(s) 219, 306, 366
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 2 cut(s) 248, 652
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 488, 650
SduI GDGCHC 3 cut(s) 339, 412, 533
SexAI ACCWGGT 1 cut(s) 648
SfaNI GCATC 3 cut(s) 68, 292, 743
SfcI CTRYAG 3 cut(s) 261, 638, 694
SfiI GGCCNNNNNGGCC 1 cut(s) 256
SinI GGWCC 1 cut(s) 652
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 5 cut(s) 379, 557, 786, 796, 811
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 486, 648
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 4 cut(s) 190, 456, 642, 668
TaiI ACGT 2 cut(s) 528, 603
TasI AATT 5 cut(s) 379, 557, 786, 796, 811
TatI WGTACW 2 cut(s) 197, 668
TfiI GAWTC 2 cut(s) 122, 545
Tru1I TTAA 3 cut(s) 90, 378, 383
Tru9I TTAA 3 cut(s) 90, 378, 383
TscAI CASTG 5 cut(s) 171, 193, 273, 358, 437
TseFI GTSAC 4 cut(s) 12, 53, 467, 577
TseI GCWGC 3 cut(s) 218, 305, 365
Tsp45I GTSAC 4 cut(s) 12, 53, 467, 577
TspDTI ATGAA 2 cut(s) 17, 153
TspRI CASTG 5 cut(s) 171, 193, 273, 358, 437
Tth111I GACNNNGTC 1 cut(s) 650
Vha464I CTTAAG 1 cut(s) 89
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 652
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.