MD15G1279900.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002583
Physical Location & Seq
Forward (+)
24886316 .. 24888457
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1279900.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGATCACAAACTTTCCTTTCTTAATACCTTGCTTTGCCTCTTGTTCCTAAGCCCTAATCTTATGTTCTGTCAGCTTGATTTTAAATTCTATGATTCAACTTGTCCCAACCTGACCAAGATCGTTCAGTCTGGAGTTTGGTCAGCTATTGCAAATGATACTAGAATTGCGGCCTCACTTTTGAGGCTTCACTTCCATGATTGCTTTGTTAATGGATGTGATGCATCATTGCTACTTGATGATACCAGCGGTTTTAAAGGGGAGAAAAATGCTGCACCCAACAAAAATTCAGCCAGAGGTTTTGAGGTGATTGACACAATCAAGTCAAAGGTGGAGGAAGCTTGCCCATCCACTGTTTCTTGCACTGACATAATCACTCTTGTATCAAGAGCAGCCGTTTATTTTAGTGGAGGGCCATATTGGCCAGTACCCTTGGGTCGTAGAGATGGCACAACAGCAAGTGAAGATGCTGCTAATAAACAATTGCCATCACCCTTTGAGCCCTTGGAAAACATCACTGCAAAGTTCACAGCCAAAGGCCTTGACTTAAAGGATGTAGTTGTGCTCTCAGGTGCACATACAATTGGGTTTGCTCAATGCTTCACTTTCAAGACTAGACTCTTCAACTTTGATGACTCTGGCAAACCTGACCCAACACTGGACACTTCACGTTTACAAAACCTGCAAAGCGTGTGCCCTAATCAAGCCGACTCCGATACCAATCTGGTTCCCTTTGATCCAGTCACTTCAGCCAAGTTTGACAACATCTACTACAAAACCCTAGTCAACAATTCTGGACTTCTCCAATCAGACCAAGTGCTTATGGGGGATAATAGAACTGCTTCCATGGTTCTTAGCTACAGCAAGTTTCCATTTCTATTTAACAACGACTTTGGAGCATCGATGGTGAAGATGGCCAATCTTGGTGTACTCACAGGAAGCAATGGAGAAATCAGGAAGAATTGTAGGGTGGTGAATAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

35.96

Weight (kDa)

6.43

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 288 6.6e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 690
AciI CCGC 2 cut(s) 170, 249
AclWI GGATC 2 cut(s) 12, 731
AcoI YGGCCR 2 cut(s) 422, 915
AcsI RAATTY 2 cut(s) 86, 286
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 2 cut(s) 429, 930
AfiI CCNNNNNNNGG 1 cut(s) 658
AgsI TTSAA 3 cut(s) 99, 610, 625
AluBI AGCT 4 cut(s) 76, 146, 341, 858
AluI AGCT 4 cut(s) 76, 146, 341, 858
Alw21I GWGCWC 2 cut(s) 567, 577
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 2 cut(s) 12, 731
AoxI GGCC 5 cut(s) 171, 413, 422, 538, 915
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 3 cut(s) 272, 392, 470
ApoI RAATTY 2 cut(s) 86, 286
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
Asp700I GAANNNNTTC 1 cut(s) 841
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 4 cut(s) 319, 483, 919, 985
BaeGI GKGCMC 2 cut(s) 577, 698
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BalI TGGCCA 2 cut(s) 424, 917
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 2 cut(s) 567, 577
BbvI GCAGC 3 cut(s) 259, 404, 457
BccI CCATC 5 cut(s) 355, 440, 496, 898, 907
BceAI ACGGC 1 cut(s) 380
BfaI CTAG 3 cut(s) 162, 615, 782
BfmI CTRYAG 1 cut(s) 859
BfuAI ACCTGC 1 cut(s) 690
BglI GCCNNNNNGGC 1 cut(s) 421
BisI GCNGC 4 cut(s) 171, 273, 393, 471
BlsI GCNGC 4 cut(s) 172, 274, 394, 472
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 729
BmsI GCATC 4 cut(s) 211, 233, 457, 908
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 902
BsaBI GATNNNNATC 1 cut(s) 720
BsaJI CCNNGG 3 cut(s) 432, 504, 846
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse1I ACTGG 3 cut(s) 425, 663, 740
Bse3DI GCAATG 2 cut(s) 227, 949
Bse8I GATNNNNATC 1 cut(s) 720
BseCI ATCGAT 1 cut(s) 902
BseDI CCNNGG 3 cut(s) 432, 504, 846
BseGI GGATG 3 cut(s) 221, 347, 559
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMI GCAATG 2 cut(s) 227, 949
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 3 cut(s) 425, 663, 740
BseSI GKGCMC 2 cut(s) 577, 698
BseXI GCAGC 3 cut(s) 259, 404, 457
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 5 cut(s) 173, 415, 424, 540, 917
BshVI ATCGAT 1 cut(s) 902
BsiHKAI GWGCWC 2 cut(s) 567, 577
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 5 cut(s) 173, 415, 424, 540, 917
Bsp1286I GDGCHC 4 cut(s) 504, 567, 577, 698
Bsp143I GATC 3 cut(s) 4, 120, 736
Bsp19I CCATGG 1 cut(s) 846
BspACI CCGC 2 cut(s) 170, 249
BspANI GGCC 5 cut(s) 173, 415, 424, 540, 917
BspCNI CTCAG 1 cut(s) 581
BspDI ATCGAT 1 cut(s) 902
BspLI GGNNCC 1 cut(s) 729
BspMI ACCTGC 1 cut(s) 690
BspPI GGATC 2 cut(s) 12, 731
BsrDI GCAATG 2 cut(s) 227, 949
BsrI ACTGG 3 cut(s) 425, 663, 740
BssECI CCNNGG 3 cut(s) 432, 504, 846
BssMI GATC 3 cut(s) 4, 120, 736
BssT1I CCWWGG 3 cut(s) 432, 504, 846
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 626
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 50, 568, 854
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 3 cut(s) 221, 347, 559
BstKTI GATC 3 cut(s) 7, 123, 739
BstMBI GATC 3 cut(s) 4, 120, 736
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 859
BstSLI GKGCMC 2 cut(s) 577, 698
BstV1I GCAGC 3 cut(s) 259, 404, 457
Bsu15I ATCGAT 1 cut(s) 902
BsuRI GGCC 5 cut(s) 173, 415, 424, 540, 917
BsuTUI ATCGAT 1 cut(s) 902
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 3 cut(s) 221, 347, 559
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 4 cut(s) 351, 363, 516, 656
BveI ACCTGC 1 cut(s) 690
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 413
ClaI ATCGAT 1 cut(s) 902
Csp6I GTAC 2 cut(s) 428, 929
CviAII CATG 2 cut(s) 197, 847
CviQI GTAC 2 cut(s) 428, 929
DdeI CTNAG 3 cut(s) 50, 568, 854
DpnI GATC 3 cut(s) 6, 122, 738
DpnII GATC 3 cut(s) 4, 120, 736
DraI TTTAAA 2 cut(s) 85, 256
EaeI YGGCCR 2 cut(s) 422, 915
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
Eco130I CCWWGG 3 cut(s) 432, 504, 846
Eco147I AGGCCT 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 504
Eco57I CTGAAG 1 cut(s) 732
EcoT14I CCWWGG 3 cut(s) 432, 504, 846
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 3 cut(s) 432, 504, 846
FaeI CATG 2 cut(s) 200, 850
FaiI YATR 8 cut(s) 65, 93, 198, 371, 418, 579, 824, 848
FaqI GGGAC 1 cut(s) 90
FatI CATG 2 cut(s) 196, 846
Fnu4HI GCNGC 4 cut(s) 171, 273, 393, 471
FokI GGATG 3 cut(s) 228, 334, 566
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 4 cut(s) 171, 273, 393, 471
FspBI CTAG 3 cut(s) 162, 615, 782
GluI GCNGC 4 cut(s) 171, 273, 393, 471
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 5 cut(s) 173, 415, 424, 540, 917
Hin1II CATG 2 cut(s) 200, 850
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 4 cut(s) 95, 618, 635, 710
HphI GGTGA 4 cut(s) 319, 483, 919, 985
Hpy166II GTNNAC 5 cut(s) 528, 575, 674, 787, 929
Hpy188I TCNGA 2 cut(s) 715, 811
Hpy188III TCNNGA 5 cut(s) 132, 387, 610, 795, 955
Hpy8I GTNNAC 5 cut(s) 528, 575, 674, 787, 929
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 670
HpyCH4V TGCA 7 cut(s) 152, 224, 275, 363, 521, 575, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 3 cut(s) 50, 568, 854
HpySE526I ACGT 1 cut(s) 670
Hsp92II CATG 2 cut(s) 200, 850
Kzo9I GATC 3 cut(s) 4, 120, 736
LmnI GCTCC 1 cut(s) 896
Lsp1109I GCAGC 3 cut(s) 259, 404, 457
LweI GCATC 4 cut(s) 211, 233, 457, 908
MaeI CTAG 3 cut(s) 162, 615, 782
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 1 cut(s) 742
MalI GATC 3 cut(s) 6, 122, 738
MboI GATC 3 cut(s) 4, 120, 736
MboII GAAGA 4 cut(s) 476, 613, 922, 970
MfeI CAATTG 2 cut(s) 482, 582
MhlI GDGCHC 4 cut(s) 504, 567, 577, 698
MlsI TGGCCA 2 cut(s) 424, 917
MluCI AATT 7 cut(s) 86, 165, 286, 482, 582, 790, 961
MluNI TGGCCA 2 cut(s) 424, 917
MlyI GAGTC 3 cut(s) 612, 629, 704
MnlI CCTC 7 cut(s) 50, 177, 184, 290, 298, 328, 404
Mox20I TGGCCA 2 cut(s) 424, 917
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 841
MscI TGGCCA 2 cut(s) 424, 917
MseI TTAA 6 cut(s) 24, 84, 210, 255, 548, 882
MslI CAYNNNNRTG 1 cut(s) 195
Msp20I TGGCCA 2 cut(s) 424, 917
MspA1I CMGCKG 1 cut(s) 249
MunI CAATTG 2 cut(s) 482, 582
MwoI GCNNNNNNNGC 1 cut(s) 421
NcoI CCATGG 1 cut(s) 846
NdeII GATC 3 cut(s) 4, 120, 736
NlaIII CATG 2 cut(s) 200, 850
NlaIV GGNNCC 1 cut(s) 729
NmuCI GTSAC 1 cut(s) 742
NsiI ATGCAT 1 cut(s) 226
PceI AGGCCT 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 841
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 4 cut(s) 172, 274, 394, 472
PleI GAGTC 3 cut(s) 612, 629, 704
PpsI GAGTC 3 cut(s) 612, 629, 704
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 1 cut(s) 413
RsaI GTAC 2 cut(s) 429, 930
RsaNI GTAC 2 cut(s) 428, 929
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 6 cut(s) 24, 84, 210, 255, 548, 882
SatI GCNGC 4 cut(s) 171, 273, 393, 471
Sau3AI GATC 3 cut(s) 4, 120, 736
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 3 cut(s) 612, 629, 704
SduI GDGCHC 4 cut(s) 504, 567, 577, 698
SfaNI GCATC 4 cut(s) 211, 233, 457, 908
SfcI CTRYAG 1 cut(s) 859
SfiI GGCCNNNNNGGCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 7 cut(s) 86, 165, 286, 482, 582, 790, 961
SseBI AGGCCT 1 cut(s) 540
SsiI CCGC 2 cut(s) 170, 249
SspMI CTAG 3 cut(s) 162, 615, 782
StuI AGGCCT 1 cut(s) 540
StyI CCWWGG 3 cut(s) 432, 504, 846
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 673
TaqI TCGA 1 cut(s) 902
TasI AATT 7 cut(s) 86, 165, 286, 482, 582, 790, 961
TatI WGTACW 1 cut(s) 928
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 6 cut(s) 24, 84, 210, 255, 548, 882
Tru9I TTAA 6 cut(s) 24, 84, 210, 255, 548, 882
TscAI CASTG 4 cut(s) 358, 370, 523, 663
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 3 cut(s) 272, 392, 470
Tsp45I GTSAC 1 cut(s) 742
TspRI CASTG 4 cut(s) 358, 370, 523, 663
VneI GTGCAC 1 cut(s) 573
XapI RAATTY 2 cut(s) 86, 286
XmnI GAANNNNTTC 1 cut(s) 841
XspI CTAG 3 cut(s) 162, 615, 782
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.