Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004862.1

Orthogroup ID

OG0002583

Physical Location & Seq

Genomic Coordinates Reverse (-)

89038 .. 90696

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004862.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgattagaaactttgttcactttcaacaaatggagtacattacccacaagcttttctatgttgtcttgcgttgcctcttgttcctaagccctccttttgtttcctctcagctcaattataagttctatgattcctcttgtcccaacttgagcaagattgttcaacaaggcgttcggtctgctattgcaaatgattctaggattgcagcctcactcttacggcttcacttccatgattgctttgttaatggatgtgacgcatctatacttcttgacgatactagcacacttaagggggagaaaaatgctttgcccaacaaagattcagtcagaggctatgaagtgattgacaaaataaagttagcactggaggaagcttgcccatgcactgtttcctgtactgacatactcactcttgctgcaacctcagctgtttattttagcggagggccatattggcctgtagcactgggacgccgagatggcacaacagcaagtgaagatgcagctaatgacgacttgccatcaccttttgagcccttggaaaacatcactgcaaagtttgcagcaaaaggccttaatttaagggatgttgttgtcctctcaggtgcacacaccataggctttgctcagtgcttcacattcaagacaagactgttcaactttagtgactcgggcaagcctgacccggtattagacacatcacttctaacaaaactacaaaacgtgtgcccaaatcaagctgattctgataccaaattggctccacttgatcctgtcacttccaacaggtttgataacgtttacttcaaaagactggtgaacaaatcagggcttctacagtcagaccaggtccttatgggggacagtacaactgcttcaatggtcatcagctatagcagatttccaaatctgttcaacaaggactttggagcatcaatggtgaagatggcaaatataggtgtgcttactggacaaaatggacaaatcaggaagaattgtagggtggtgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

338

Amino Acids

37.23

Weight (kDa)

7.98

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49570
fragaria_vesca	FvH4_1g15550 FvH4_1g15551 FvH4_1g15551 FvH4_2g06860
malus_domestica	MD02G1167700.v1.1 MD05G1075100.v1.1 MD15G1279900.v1.1
prunus_persica	Prupe.7G137500_v2.0.a1 Prupe.8G116400_v2.0.a1
pyrus_communis	pycom05g06820
rosa_chinensis	RchiOBHm_Chr2g0104851 RchiOBHm_Chr2g0104861 RchiOBHm_Chr6g0259161
rosa_laevigata	RLG00000014552 RLG00000017363 RLG00000017364
rosa_multiflora	Rmu_co8495059.1_g000001 Rmu_sc0003419.1_g000019 Rmu_sc0003419.1_g000021 Rmu_sc0004862.1_g000021
rosa_roxburghii	Rroxscaffold_2G00138710 Rroxscaffold_2G00138720 Rroxscaffold_7G00206470
rosa_rugosa	Rorug02G0123500 Rorug05G0585300
rosa_samantha	Rh2AG173600 Rh2AG173800 Rh2BG181200 Rh2BG181400 Rh2CG178600 Rh2CG178700 Rh2DG179800 Rh2DG180000 Rh6AG102300 Rh6CG091700 Rh6DG085700
rosa_wichuraiana	Rw2G013660 Rw2G013670 Rw6G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AciI	CCGC	1 cut(s)	444
AclI	AACGTT	1 cut(s)	801
AclWI	GGATC	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	475
AfaI	GTAC	3 cut(s)	38, 400, 871
AfiI	CCNNNNNNNGG	1 cut(s)	862
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	7 cut(s)	26, 164, 646, 661, 811, 882, 919
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	7 cut(s)	52, 112, 377, 431, 509, 743, 894
AluI	AGCT	7 cut(s)	52, 112, 377, 431, 509, 743, 894
Alw21I	GWGCWC	1 cut(s)	613
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	673
AoxI	GGCC	3 cut(s)	449, 458, 574
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	4 cut(s)	206, 419, 506, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
AspS9I	GGNCC	2 cut(s)	449, 853
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	519, 832, 955
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	853
BaeGI	GKGCMC	2 cut(s)	613, 734
BanII	GRGCYC	1 cut(s)	540
BarI	GAAGNNNNNNTAC	2 cut(s)	862, 894
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	427
BbvI	GCAGC	4 cut(s)	218, 406, 518, 578
BccI	CCATC	3 cut(s)	476, 532, 943
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	851
BcnI	CCSGG	1 cut(s)	689
BfaI	CTAG	2 cut(s)	198, 282
BfmI	CTRYAG	3 cut(s)	462, 839, 895
BfrI	CTTAAG	1 cut(s)	290
BglI	GCCNNNNNGGC	2 cut(s)	457, 483
BisI	GCNGC	4 cut(s)	207, 420, 507, 567
BlsI	GCNGC	4 cut(s)	208, 421, 508, 568
Bme1390I	CCNGG	2 cut(s)	689, 851
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	449, 853
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	2 cut(s)	689, 851
BmrI	ACTGGG	1 cut(s)	479
BmsI	GCATC	3 cut(s)	269, 493, 944
BmuI	ACTGGG	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	2 cut(s)	86, 427
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	689
BsaHI	GRCGYC	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
Bse1I	ACTGG	4 cut(s)	372, 474, 822, 976
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	257, 595
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseMII	CTCAG	4 cut(s)	122, 441, 618, 644
BseNI	ACTGG	4 cut(s)	372, 474, 822, 976
BseSI	GKGCMC	2 cut(s)	613, 734
BseXI	GCAGC	4 cut(s)	218, 406, 518, 578
BshFI	GGCC	3 cut(s)	451, 460, 576
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	3 cut(s)	126, 486, 878
BslI	CCNNNNNNNGG	1 cut(s)	862
BsmFI	GGGAC	3 cut(s)	126, 486, 878
BsnI	GGCC	3 cut(s)	451, 460, 576
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	3 cut(s)	540, 613, 734
Bsp143I	GATC	1 cut(s)	772
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	3 cut(s)	451, 460, 576
BspCNI	CTCAG	4 cut(s)	121, 440, 617, 643
BspLI	GGNNCC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	767
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	4 cut(s)	372, 474, 822, 976
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	1 cut(s)	772
BssNI	GRCGYC	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	4 cut(s)	391, 657, 843, 869
BstACI	GRCGYC	1 cut(s)	475
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	379, 680
BstDEI	CTNAG	5 cut(s)	86, 108, 427, 604, 630
BstF5I	GGATG	2 cut(s)	257, 595
BstKTI	GATC	1 cut(s)	775
BstMBI	GATC	1 cut(s)	772
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 457, 483, 563
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	2 cut(s)	687, 849
BstSFI	CTRYAG	3 cut(s)	462, 839, 895
BstSLI	GKGCMC	2 cut(s)	613, 734
BstV1I	GCAGC	4 cut(s)	218, 406, 518, 578
BsuRI	GGCC	3 cut(s)	451, 460, 576
BtsCI	GGATG	2 cut(s)	257, 595
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	5 cut(s)	365, 387, 467, 552, 638
Cac8I	GCNNGC	2 cut(s)	379, 680
Cfr13I	GGNCC	2 cut(s)	449, 853
CseI	GACGC	2 cut(s)	266, 483
CsiI	ACCWGGT	1 cut(s)	849
Csp6I	GTAC	3 cut(s)	37, 399, 870
CviAII	CATG	2 cut(s)	233, 384
CviQI	GTAC	3 cut(s)	37, 399, 870
DdeI	CTNAG	5 cut(s)	86, 108, 427, 604, 630
DpnI	GATC	1 cut(s)	774
DpnII	GATC	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	853
Eco88I	CYCGRG	1 cut(s)	673
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	2 cut(s)	236, 387
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	3 cut(s)	126, 486, 878
FatI	CATG	2 cut(s)	232, 383
Fnu4HI	GCNGC	4 cut(s)	207, 420, 507, 567
FokI	GGATG	2 cut(s)	264, 602
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	4 cut(s)	207, 420, 507, 567
FspBI	CTAG	2 cut(s)	198, 282
GluI	GCNGC	4 cut(s)	207, 420, 507, 567
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	451, 460, 576
HapII	CCGG	1 cut(s)	689
HgaI	GACGC	2 cut(s)	266, 483
Hin1I	GRCGYC	1 cut(s)	475
Hin1II	CATG	2 cut(s)	236, 387
HindIII	AAGCTT	2 cut(s)	50, 375
HinfI	GANTC	5 cut(s)	131, 194, 323, 671, 746
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	3 cut(s)	519, 832, 955
Hpy166II	GTNNAC	4 cut(s)	19, 611, 805, 823
Hpy188I	TCNGA	3 cut(s)	332, 751, 847
Hpy188III	TCNNGA	3 cut(s)	272, 646, 991
Hpy8I	GTNNAC	4 cut(s)	19, 611, 805, 823
HpyCH4III	ACNGT	4 cut(s)	391, 657, 843, 869
HpyCH4IV	ACGT	2 cut(s)	726, 801
HpyCH4V	TGCA	8 cut(s)	188, 206, 387, 422, 506, 557, 566, 611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 457, 483, 563
HpyF3I	CTNAG	5 cut(s)	86, 108, 427, 604, 630
HpySE526I	ACGT	2 cut(s)	726, 801
Hsp92I	GRCGYC	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	236, 387
Kzo9I	GATC	1 cut(s)	772
LmnI	GCTCC	2 cut(s)	769, 932
Lsp1109I	GCAGC	4 cut(s)	218, 406, 518, 578
LweI	GCATC	3 cut(s)	269, 493, 944
MabI	ACCWGGT	1 cut(s)	849
MaeI	CTAG	2 cut(s)	198, 282
MaeII	ACGT	2 cut(s)	726, 801
MaeIII	GTNAC	3 cut(s)	254, 668, 778
MalI	GATC	1 cut(s)	774
MboI	GATC	1 cut(s)	772
MboII	GAAGA	3 cut(s)	512, 958, 1006
MhlI	GDGCHC	3 cut(s)	540, 613, 734
MluCI	AATT	5 cut(s)	115, 580, 758, 997, 1012
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	1 cut(s)	810
MseI	TTAA	4 cut(s)	246, 291, 579, 584
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	2 cut(s)	689, 851
MvaI	CCWGG	1 cut(s)	851
MwoI	GCNNNNNNNGC	4 cut(s)	428, 457, 483, 563
NciI	CCSGG	1 cut(s)	689
NdeII	GATC	1 cut(s)	772
NlaIII	CATG	2 cut(s)	236, 387
NlaIV	GGNNCC	1 cut(s)	765
NmeAIII	GCCGAG	1 cut(s)	503
NmuCI	GTSAC	3 cut(s)	254, 668, 778
PceI	AGGCCT	1 cut(s)	576
PfeI	GAWTC	4 cut(s)	131, 194, 323, 746
PflFI	GACNNNGTC	1 cut(s)	851
PkrI	GCNGC	4 cut(s)	208, 421, 508, 568
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	853
PsiI	TTATAA	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	801
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	1 cut(s)	765
PspPI	GGNCC	2 cut(s)	449, 853
PspPPI	RGGWCCY	1 cut(s)	853
PsyI	GACNNNGTC	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	38, 400, 871
RsaNI	GTAC	3 cut(s)	37, 399, 870
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	246, 291, 579, 584
SatI	GCNGC	4 cut(s)	207, 420, 507, 567
Sau3AI	GATC	1 cut(s)	772
Sau96I	GGNCC	2 cut(s)	449, 853
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	2 cut(s)	689, 851
SduI	GDGCHC	3 cut(s)	540, 613, 734
SexAI	ACCWGGT	1 cut(s)	849
SfaNI	GCATC	3 cut(s)	269, 493, 944
SfcI	CTRYAG	3 cut(s)	462, 839, 895
SfiI	GGCCNNNNNGGCC	1 cut(s)	457
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	148, 290
SmoI	CTYRAG	2 cut(s)	148, 290
Sse9I	AATT	5 cut(s)	115, 580, 758, 997, 1012
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	2 cut(s)	198, 282
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	687, 849
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	4 cut(s)	391, 657, 843, 869
TaiI	ACGT	2 cut(s)	729, 804
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	5 cut(s)	115, 580, 758, 997, 1012
TatI	WGTACW	3 cut(s)	36, 398, 869
TfiI	GAWTC	4 cut(s)	131, 194, 323, 746
Tru1I	TTAA	4 cut(s)	246, 291, 579, 584
Tru9I	TTAA	4 cut(s)	246, 291, 579, 584
TscAI	CASTG	5 cut(s)	372, 394, 474, 559, 638
TseFI	GTSAC	3 cut(s)	254, 668, 778
TseI	GCWGC	4 cut(s)	206, 419, 506, 566
Tsp45I	GTSAC	3 cut(s)	254, 668, 778
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	5 cut(s)	372, 394, 474, 559, 638
Tth111I	GACNNNGTC	1 cut(s)	851
Vha464I	CTTAAG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	853
XspI	CTAG	2 cut(s)	198, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.