Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002054

Physical Location & Seq

Genomic Coordinates Reverse (-)

18810603 .. 18812050

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAGGGATCTGAAGCTATGCTTCCTTGTCAAAACCGTTCTGCTCCTTCTCTTCACTCAAACGCTCTGTCTAAGAGTGTTTCCTACTGGGGTTGGAGATTTGCAAACACAAAGTTCGAGTCTTGGGCTATAGAAATGGCTGCTTTACATGAACCCACTTGGAGAGAAGCTGGCATTTTTGAAGCAGTCATGGCATCCATATACAGAATCCCTAAAAACCCGGATCTTATTCTGGGTATTGCTGAGAAATGGTGTCCTTACACCAAAACCTTTGTTTTCCCTTGGGGTGAAACAGCTGTCACACTTGAAGATGTTATGGTGCTTTCAGGTTTCTCTGTTTTGGGTTCACCTGTTTTTGCCACTCTGGATAGCTCAGGAAAGGAGGTTAAGGCGAAACTGGATAAAGAGTGGAAGAAGATTAAGAAAGCTAAAGTCAATTTCGTAACACAAGTAGCATGGATGGAGAGATTCATGGACAGTGGTGATGAGCTTGAGCATGTGGCTTTCCTCGTCTTGTGGCTTAACTATTTTGTGTTTCCATCACGCTTGTATCATCTCTATAAAGCTGTTTTCCCAATTGTTGTTCATCTTTCAACTGGTACTAGGATTGCTCTTGCCCTTGCTGTTCTTGCACACTTATATGCTGAGCTAAGTCTCTTAAAAAAACACATCACAGCTTTCAGTGAATCGACGAGTACGGCTAGAATTGATCTCACTGCCCTGTTTAAGTTGCTTCAAGTTTGGACATGGGAGAGGTTCAAGGAACTACATCCCAATCTTGATGTTGAATTTGTCTCCTTTGCTCGATGCATTAAGGTGTCTCAGCTTGTTGGAATTGACAATGTGGAGCATTACTTTCCCAATCGAGTGGCTTCACAGTTTGGGATGCTTCAAGATGTTCCTTGTGCTGTTAACCAGAACAACCTCTCACAGGAGGCAGCTTGGAATGATTACAATAAGCCTATTAACGATTTAGCATTATTCATTCCTTCACGTTCTGCAATACCTCGTGTTACTCCAACGTTCTGCGAATGGTGGAGGAGGTCGTTTCCAGAATTCCAGACTTCTTCTAAGGATAAGGATGCTAATGAATCAGCTGAAACATTGAAAGCTAGAGACAGAAAAAGCCTAGGGGCTGATACTAGTTTTGTTCCTTCTGGCTCCAAGATGAACAAGAAAGGCAAGGATAATATGAAAATTCATGCTCAGGATTCGACAAACACAAGACGCAAGAACATAAAGCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

416

Amino Acids

47.36

Weight (kDa)

9.06

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	58 - 259	4.2e-71	Plant mobile domain
PMD	PF10536	260 - 347	3.7e-27	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32120 AT1G50750 AT1G50760 AT1G50770 AT1G50790 AT1G50820 AT1G50820 AT1G50830 AT1G51538 AT4G16050 AT5G18510
fragaria_vesca	FvH4_3g22270 FvH4_6g23881 FvH4_7g03072
malus_domestica	MD03G1206300.v1.1
prunus_persica	Prupe.4G209700_v2.0.a1 Prupe.4G209800_v2.0.a1
pyrus_communis	pycom03g15550
rosa_chinensis	RchiOBHm_Chr5g0038341 RchiOBHm_Chr5g0038431 RchiOBHm_Chr5g0038611
rosa_laevigata	RLG00000033849 RLG00000033852 RLG00000033857 RLG00000033858
rosa_multiflora	Rmu_sc0009149.1_g000008 Rmu_sc0027059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042500 Rroxscaffold_1G00042570 Rroxscaffold_1G00042600 Rroxscaffold_1G00042610 Rroxscaffold_1G00042660
rosa_rugosa	Rorug05G0172100
rosa_samantha	Rh5AG259500 Rh5AG259900 Rh5BG263400 Rh5BG263800 Rh5CG295800 Rh5CG296100 Rh5DG272300 Rh5DG272600
rosa_wichuraiana	Rw0G013280 Rw5G024300 Rw5G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	1022
AclWI	GGATC	2 cut(s)	16, 231
AcsI	RAATTY	3 cut(s)	788, 1055, 1197
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	2 cut(s)	601, 697
AfiI	CCNNNNNNNGG	1 cut(s)	931
AgsI	TTSAA	8 cut(s)	182, 308, 594, 737, 760, 788, 893, 1108
AhlI	ACTAGT	1 cut(s)	1142
Alw26I	GTCTC	4 cut(s)	659, 799, 825, 1110
AlwI	GGATC	2 cut(s)	16, 231
ApeKI	GCWGC	2 cut(s)	140, 938
ApoI	RAATTY	3 cut(s)	788, 1055, 1197
ArsI	GACNNNNNNTTYG	4 cut(s)	53, 85, 104, 136
AspA2I	CCTAGG	1 cut(s)	1129
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	299, 339, 494
AvrII	CCTAGG	1 cut(s)	1129
BaeI	ACNNNNGTAYC	2 cut(s)	533, 566
BauI	CACGAG	1 cut(s)	1008
BbvI	GCAGC	2 cut(s)	127, 950
BccI	CCATC	2 cut(s)	454, 547
BceAI	ACGGC	1 cut(s)	714
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	4 cut(s)	659, 799, 825, 1110
BcuI	ACTAGT	1 cut(s)	1142
BfaI	CTAG	5 cut(s)	603, 702, 1113, 1130, 1143
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	141, 939
BlnI	CCTAGG	1 cut(s)	1129
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	2 cut(s)	142, 940
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	1162
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	4 cut(s)	203, 797, 876, 1072
BmuI	ACTGGG	1 cut(s)	97
Bpu10I	CCTNAGC	2 cut(s)	373, 1206
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	281, 1129
Bsc4I	CCNNNNNNNGG	1 cut(s)	931
Bse1I	ACTGG	3 cut(s)	92, 402, 601
BseDI	CCNNGG	2 cut(s)	281, 1129
BseGI	GGATG	5 cut(s)	194, 465, 769, 891, 1087
BseLI	CCNNNNNNNGG	1 cut(s)	931
BseMII	CTCAG	5 cut(s)	234, 387, 636, 836, 1220
BseNI	ACTGG	3 cut(s)	92, 402, 601
BseRI	GAGGAG	1 cut(s)	1054
BseXI	GCAGC	2 cut(s)	127, 950
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	931
BsmAI	GTCTC	4 cut(s)	659, 799, 825, 1110
Bsp143I	GATC	3 cut(s)	8, 223, 709
Bsp1720I	GCTNAGC	1 cut(s)	645
BspCNI	CTCAG	5 cut(s)	235, 386, 637, 835, 1219
BspLI	GGNNCC	1 cut(s)	1162
BspPI	GGATC	2 cut(s)	16, 231
BsrI	ACTGG	3 cut(s)	92, 402, 601
BssECI	CCNNGG	2 cut(s)	281, 1129
BssMI	GATC	3 cut(s)	8, 223, 709
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	2 cut(s)	281, 1129
Bst2BI	CACGAG	1 cut(s)	1008
Bst4CI	ACNGT	3 cut(s)	38, 479, 879
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	8 cut(s)	72, 243, 373, 645, 650, 822, 1071, 1206
BstENI	CCTNNNNNAGG	1 cut(s)	929
BstF5I	GGATG	5 cut(s)	194, 465, 769, 891, 1087
BstKTI	GATC	3 cut(s)	11, 226, 712
BstMAI	GTCTC	4 cut(s)	659, 799, 825, 1110
BstMBI	GATC	3 cut(s)	8, 223, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 629
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	127, 950
BstX2I	RGATCY	2 cut(s)	8, 223
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	2 cut(s)	8, 223
BtsCI	GGATG	5 cut(s)	194, 465, 769, 891, 1087
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	3 cut(s)	484, 688, 714
Cac8I	GCNNGC	1 cut(s)	172
CseI	GACGC	1 cut(s)	1236
Csp6I	GTAC	2 cut(s)	600, 696
CviAII	CATG	7 cut(s)	149, 190, 456, 472, 497, 747, 1202
CviQI	GTAC	2 cut(s)	600, 696
DdeI	CTNAG	8 cut(s)	72, 243, 373, 645, 650, 822, 1071, 1206
DpnI	GATC	3 cut(s)	10, 225, 711
DpnII	GATC	3 cut(s)	8, 223, 709
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	281, 1129
Eco57I	CTGAAG	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	929
EcoRI	GAATTC	1 cut(s)	1055
EcoT14I	CCWWGG	2 cut(s)	281, 1129
EcoT22I	ATGCAT	1 cut(s)	812
ErhI	CCWWGG	2 cut(s)	281, 1129
FaeI	CATG	7 cut(s)	152, 193, 459, 475, 500, 750, 1205
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	7 cut(s)	148, 189, 455, 471, 496, 746, 1201
Fnu4HI	GCNGC	2 cut(s)	141, 939
FokI	GGATG	5 cut(s)	181, 472, 756, 898, 1094
Fsp4HI	GCNGC	2 cut(s)	141, 939
FspBI	CTAG	5 cut(s)	603, 702, 1113, 1130, 1143
GluI	GCNGC	2 cut(s)	141, 939
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	1236
Hin1II	CATG	7 cut(s)	152, 193, 459, 475, 500, 750, 1205
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HinfI	GANTC	6 cut(s)	119, 207, 468, 686, 1091, 1211
HpaI	GTTAAC	1 cut(s)	913
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	3 cut(s)	299, 339, 494
Hpy166II	GTNNAC	2 cut(s)	347, 913
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	7 cut(s)	365, 375, 779, 893, 1052, 1060, 1208
Hpy8I	GTNNAC	2 cut(s)	347, 913
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	3 cut(s)	57, 999, 1164
HpyCH4III	ACNGT	3 cut(s)	38, 479, 879
HpyCH4IV	ACGT	2 cut(s)	994, 1022
HpyCH4V	TGCA	4 cut(s)	104, 632, 810, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 629
HpyF3I	CTNAG	8 cut(s)	72, 243, 373, 645, 650, 822, 1071, 1206
HpySE526I	ACGT	2 cut(s)	994, 1022
Hsp92II	CATG	7 cut(s)	152, 193, 459, 475, 500, 750, 1205
KspAI	GTTAAC	1 cut(s)	913
Kzo9I	GATC	3 cut(s)	8, 223, 709
LmnI	GCTCC	3 cut(s)	49, 847, 1166
Lsp1109I	GCAGC	2 cut(s)	127, 950
LweI	GCATC	4 cut(s)	203, 797, 876, 1072
MaeI	CTAG	5 cut(s)	603, 702, 1113, 1130, 1143
MaeII	ACGT	2 cut(s)	994, 1022
MaeIII	GTNAC	3 cut(s)	298, 442, 1012
MalI	GATC	3 cut(s)	10, 225, 711
MboI	GATC	3 cut(s)	8, 223, 709
MboII	GAAGA	5 cut(s)	44, 320, 424, 427, 1059
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	2 cut(s)	8, 223
MluCI	AATT	7 cut(s)	436, 576, 705, 788, 834, 1055, 1197
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	3 cut(s)	74, 811, 1043
MnlI	CCTC	8 cut(s)	376, 518, 747, 928, 935, 1017, 1032, 1035
Mph1103I	ATGCAT	1 cut(s)	812
MseI	TTAA	8 cut(s)	387, 420, 522, 659, 726, 813, 912, 966
MslI	CAYNNNNRTG	2 cut(s)	639, 815
MspA1I	CMGCKG	2 cut(s)	296, 1097
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	191, 629
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	8, 223, 709
NlaIII	CATG	7 cut(s)	152, 193, 459, 475, 500, 750, 1205
NlaIV	GGNNCC	1 cut(s)	1162
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	500
PfeI	GAWTC	5 cut(s)	207, 468, 686, 1091, 1211
PkrI	GCNGC	2 cut(s)	142, 940
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	1022
PspN4I	GGNNCC	1 cut(s)	1162
PsuI	RGATCY	2 cut(s)	8, 223
PvuII	CAGCTG	2 cut(s)	296, 1097
RsaI	GTAC	2 cut(s)	601, 697
RsaNI	GTAC	2 cut(s)	600, 696
RseI	CAYNNNNRTG	2 cut(s)	639, 815
SaqAI	TTAA	8 cut(s)	387, 420, 522, 659, 726, 813, 912, 966
SatI	GCNGC	2 cut(s)	141, 939
Sau3AI	GATC	3 cut(s)	8, 223, 709
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	221
SfaNI	GCATC	4 cut(s)	203, 797, 876, 1072
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	639, 815
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SpeI	ACTAGT	1 cut(s)	1142
Sse9I	AATT	7 cut(s)	436, 576, 705, 788, 834, 1055, 1197
SspMI	CTAG	5 cut(s)	603, 702, 1113, 1130, 1143
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	281, 1129
TaaI	ACNGT	3 cut(s)	38, 479, 879
TaiI	ACGT	2 cut(s)	997, 1025
TaqI	TCGA	5 cut(s)	117, 689, 805, 865, 1214
TasI	AATT	7 cut(s)	436, 576, 705, 788, 834, 1055, 1197
TfiI	GAWTC	5 cut(s)	207, 468, 686, 1091, 1211
Tru1I	TTAA	8 cut(s)	387, 420, 522, 659, 726, 813, 912, 966
Tru9I	TTAA	8 cut(s)	387, 420, 522, 659, 726, 813, 912, 966
TscAI	CASTG	3 cut(s)	484, 688, 721
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	140, 938
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	9 cut(s)	17, 165, 460, 575, 973, 1104, 1184, 1190, 1208
TspRI	CASTG	3 cut(s)	484, 688, 721
XagI	CCTNNNNNAGG	1 cut(s)	929
XapI	RAATTY	3 cut(s)	788, 1055, 1197
XceI	RCATGY	1 cut(s)	500
XmaJI	CCTAGG	1 cut(s)	1129
XspI	CTAG	5 cut(s)	603, 702, 1113, 1130, 1143
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.