AT1G50790

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002054
Physical Location & Seq
Reverse (-)
18823822 .. 18826637
2816 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50790.1

Sequence Viewer

Length: 2439 bp
ATGGCGTCTCCCACAGAGAACAGTAATCGATCTAGTAGTAGCAAAAAACCCCATCTTTTGAAACCTTGTCTCACCTCCATTAATGAATCTCAAGCTCATCTTTGTCAGAAACGCTCAGCTCCTTCTCCTGACTTAGAAGCTCTTTCCACGAGTGTTACTTTCTGGGGATGGAGGTATCCACACAACAAGTTCAACTCTTGGGCTAGAAAAATGTCAGCTTTACACGAACCCATTTGGAGAAAAGCTGGGATTTTTGAAGCAATTTTAGCATCCACTTACAAAATCTTTAAGAACACAGATCTTGTTATGGGTATTGCTGAGAAATGGTGTCCTGACACCAACACCTTCGTTTTCTCTTGGGGTGAAGCAACCATAACACTTGAAGATGTTATGGTGCTTTTAGGTTTCTCTGTTTTGGGTTCACCTGTTTTTGCTACTCTGGATAGCTCAGGAAAGGAGATAATGGCGAAACTGGGGAAAGAATGGCTGAAGATTAAGAAAGATAAAGGAACATTTGTAACCCAAATAGCATGGATAGAGAGATTCATGGACAGTGGTGATGAGCTTGAGCATTTAGCTTTCCTTGTCTTGTGGCTTAGCTACTTCGTGTTTCCAACACGCTATTATCATATCTATGAAGCTATTTGGCCAATTGCTATTCATCTTTCAAACGGTACCAAGATGGCTCTTGCTCCTGCTGTTCTTGCACACTTGTATGCAGACCTAAGTCTCTTGAAAAATCACATTACAGCTTTAAGCGAATCGCCTATTAAGGTCGAAATTGATCTGAGTTCTTTGTGTAAGCTGGTCAATGTTTGGATTTGGGAGAGATTCAGGGCACTACAATCAAAACCCAATCTGTTGTTAAAAGGTGAGCCAAGATTGGCTCTTTGGAATGACCTGAAACAGAGAACCAGCAATGCAAAGCGGATTCTGAACAACTCGAAAATCGATGGTTTTGAGTGGTGTCCATACACAAAAACTGTGAAAAACTGGGACTTTCCTCAGTTTTATCCTGAGAAAGCGACGTGGGTGACTCTTGTTCCCAACCGTGATGATGAATTTATCTCCTTTGCTCGATGCATTATGGTGTCTCAGCTTGTTGGCATTGACAGTTTGGAGCATTACTATCCCAATCGGGTGGCTTCACAGTTTGGGAGGCTTCAGGATGTGCATTGTCCTGTTAACCGGAACAACCTCTCACGTGAGGCAGCTTGGAATGATTACTACAAGCCTCTTGATGATTTGGAATTATACATTCCTTCCCGTTCTGCAATATCTTGTGATACGCCAATGTTCTGCGACAGTTGGAGAAAGAGGGTTGTTGGGTCAGCTAAAACATTGAGAACCAGCATAGGTGATGACACTAGTTTTGTTCCATCAGGCTCTAAGATGAATAGAAGAAGCGAGGATGGAAGGAAGATAGCTGAGGATTCAACAAAAAAGAGACTTAAGTTCATGAAGAGTGCTCGTAAGAACGATGGGAGTACAATGGGTCAGAAACAGGTTATATCAGACGATGCTGATGACGATGATAGCCTCACCGTTGCTCAAATAACGACACTTTATAAGAAGAAGTATAGTGAGAACAGTGGAGGAAATGCTTCTGAGCCGCTTGGTAAGAAAATAAGACTTGAGGCAGATAACAATGGTTTAGAGCCTTGCCAAAAGCTTTCTTCGATAAGATATGATGGGGATGAAACTGTACCACCACCAGAAATAAAGAAAAGGAATGAAGAAACAGGAAGTAAATCAGGGATGCGTGTGGTTCTGAGCCCATTTGATGAAAGCAACTCTTCAAAACCTCCTGTTGATTTTGGTCGAGCAATTGACATTGTTGTATCAGCACCAGAGACAATGACATTCTGTGATGATGTATATGGAAACAATGCAGAGAAGAAGACTATGATCGATGATGACAGCGAGGAATTAAAGTGTTTGCTCCATGAAGATGGTACCATAACTAGAGAAATGGCGAGATCAGATAAGAAGTGTTGCAGTGAAGCTGAGAAGGAAGATGCTGATGGAGGGATCAGTGACAAGGTTCTAGCATCAAAGGCAGACAACAAAAAATCGATCCCTTATCAAAAACTTGCTTCTGGATGCGCTAATGGAGATGAGACAAGCAAAGCATATAAGCCTAAGGTACTGAAGCGGTCTGATGGAAATCAGGCTCATGCTTGTTTGCTTCCTGATGATGGAATCAGAAGTGAAGAAACTATGAAATCCAACGAGCAGTTAAAGGTTTTTGAAAAGAGAAACAATGATTTGGGTGAGGGTGATGTTGATAATGACACCACTGAAAAGAGATCTCAAAAGCTGAATGTGCTGGCATTGTCGATAGAGGAACGTGTTCTTAAGGCAGAAAGAACTGTGGCATGGTTGAACCAAAGGAGAGCCATAAAACAGAGAAAAGTAGCAGCAGCTGGTTTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

812

Amino Acids

91.49

Weight (kDa)

8.13

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 83 - 438 6.7e-118 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1569
Acc65I GGTACC 2 cut(s) 674, 1955
AccB1I GGYRCC 2 cut(s) 674, 1955
AciI CCGC 3 cut(s) 928, 1613, 2155
AclWI GGATC 2 cut(s) 2039, 2071
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 1 cut(s) 1061
AcuI CTGAAG 3 cut(s) 509, 1148, 2171
AcvI CACGTG 1 cut(s) 1205
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 676, 1489, 1707, 1957, 2148
AfiI CCNNNNNNNGG 1 cut(s) 2198
AflII CTTAAG 2 cut(s) 1451, 2357
AflIII ACRYGT 1 cut(s) 2350
AhlI ACTAGT 1 cut(s) 1367
AjiI CACGTC 1 cut(s) 1029
Alw21I GWGCWC 1 cut(s) 1471
Alw26I GTCTC 7 cut(s) 12, 74, 734, 1098, 1441, 1847, 2114
AlwI GGATC 2 cut(s) 2039, 2071
AlwNI CAGNNNCTG 1 cut(s) 2426
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 3 cut(s) 1211, 2420, 2423
ApoI RAATTY 1 cut(s) 1061
ArsI GACNNNNNNTTYG 2 cut(s) 1355, 1387
AseI ATTAAT 1 cut(s) 81
Asp700I GAANNNNTTC 2 cut(s) 1603, 2352
Asp718I GGTACC 2 cut(s) 674, 1955
AspLEI GCGC 1 cut(s) 2108
AxyI CCTNAGG 1 cut(s) 2142
BaeGI GKGCMC 1 cut(s) 841
BalI TGGCCA 1 cut(s) 649
BanI GGYRCC 2 cut(s) 674, 1955
BanII GRGCYC 1 cut(s) 1778
BauI CACGAG 1 cut(s) 148
BbrPI CACGTG 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 1907
Bbv12I GWGCWC 1 cut(s) 1471
BbvCI CCTCAGC 1 cut(s) 1428
BbvI GCAGC 3 cut(s) 1223, 2432, 2435
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 7 cut(s) 12, 74, 734, 1098, 1441, 1847, 2114
BcuI ACTAGT 1 cut(s) 1367
BfaI CTAG 5 cut(s) 33, 204, 1368, 1965, 2048
BfrI CTTAAG 2 cut(s) 1451, 2357
BfuI GTATCC 1 cut(s) 186
BglII AGATCT 2 cut(s) 298, 2309
BisI GCNGC 4 cut(s) 1212, 1613, 2421, 2424
BlpI GCTNAGC 2 cut(s) 115, 596
BlsI GCNGC 4 cut(s) 1213, 1614, 2422, 2425
BmgBI CACGTC 1 cut(s) 1029
BmiI GGNNCC 2 cut(s) 676, 1957
BmrI ACTGGG 2 cut(s) 482, 1003
BmsI GCATC 7 cut(s) 278, 1070, 1510, 1749, 2008, 2060, 2093
BmuI ACTGGG 2 cut(s) 482, 1003
BoxI GACNNNNGTC 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 1907
Bpu10I CCTNAGC 2 cut(s) 448, 1428
Bpu1102I GCTNAGC 2 cut(s) 115, 596
BpuEI CTTGAG 3 cut(s) 75, 587, 1655
Bsa29I ATCGAT 4 cut(s) 28, 951, 1911, 2075
BsaAI YACGTR 1 cut(s) 1205
BsaBI GATNNNNATC 1 cut(s) 2166
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 1188
Bsc4I CCNNNNNNNGG 1 cut(s) 2198
Bse1I ACTGG 2 cut(s) 477, 998
Bse21I CCTNAGG 1 cut(s) 2142
Bse3DI GCAATG 1 cut(s) 925
Bse8I GATNNNNATC 1 cut(s) 2166
BseCI ATCGAT 4 cut(s) 28, 951, 1911, 2075
BseGI GGATG 7 cut(s) 173, 269, 1174, 1417, 1702, 1764, 2108
BseJI GATNNNNATC 1 cut(s) 2166
BseLI CCNNNNNNNGG 1 cut(s) 2198
BseMI GCAATG 1 cut(s) 925
BseNI ACTGG 2 cut(s) 477, 998
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 3 cut(s) 1223, 2432, 2435
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 649
BshNI GGYRCC 2 cut(s) 674, 1955
BshVI ATCGAT 4 cut(s) 28, 951, 1911, 2075
BsiHKAI GWGCWC 1 cut(s) 1471
BsiSI CCGG 1 cut(s) 1189
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 1 cut(s) 2198
BsmAI GTCTC 7 cut(s) 12, 74, 734, 1098, 1441, 1847, 2114
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 1010
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 3 cut(s) 841, 1471, 1778
Bsp143I GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
Bsp1720I GCTNAGC 2 cut(s) 115, 596
BspACI CCGC 3 cut(s) 928, 1613, 2155
BspANI GGCC 1 cut(s) 649
BspDI ATCGAT 4 cut(s) 28, 951, 1911, 2075
BspHI TCATGA 1 cut(s) 1458
BspLI GGNNCC 2 cut(s) 676, 1957
BspPI GGATC 2 cut(s) 2039, 2071
BspT107I GGYRCC 2 cut(s) 674, 1955
BspTI CTTAAG 2 cut(s) 1451, 2357
BsrDI GCAATG 1 cut(s) 925
BsrI ACTGG 2 cut(s) 477, 998
BssMI GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 1457, 1801
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 2 cut(s) 1451, 2357
BstBAI YACGTR 1 cut(s) 1205
BstC8I GCNNGC 1 cut(s) 2331
BstF5I GGATG 7 cut(s) 173, 269, 1174, 1417, 1702, 1764, 2108
BstHHI GCGC 1 cut(s) 2108
BstKTI GATC 8 cut(s) 32, 301, 787, 1911, 1982, 2034, 2079, 2312
BstMAI GTCTC 7 cut(s) 12, 74, 734, 1098, 1441, 1847, 2114
BstMBI GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
BstMWI GCNNNNNNNGC 4 cut(s) 266, 704, 2057, 2326
BstPAI GACNNNNGTC 1 cut(s) 726
BstSLI GKGCMC 1 cut(s) 841
BstV1I GCAGC 3 cut(s) 1223, 2432, 2435
BstV2I GAAGAC 1 cut(s) 1907
BstX2I RGATCY 2 cut(s) 298, 2309
BstXI CCANNNNNNTGG 2 cut(s) 1141, 1952
BstYI RGATCY 2 cut(s) 298, 2309
Bsu15I ATCGAT 4 cut(s) 28, 951, 1911, 2075
Bsu36I CCTNAGG 1 cut(s) 2142
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 649
BsuTUI ATCGAT 4 cut(s) 28, 951, 1911, 2075
BtrI CACGTC 1 cut(s) 1029
BtsCI GGATG 7 cut(s) 173, 269, 1174, 1417, 1702, 1764, 2108
BtsI GCAGTG 1 cut(s) 2005
BtsIMutI CAGTG 5 cut(s) 559, 1597, 2005, 2041, 2298
Cac8I GCNNGC 1 cut(s) 2331
CaiI CAGNNNCTG 1 cut(s) 2426
CciI TCATGA 1 cut(s) 1458
CfoI GCGC 1 cut(s) 2108
ClaI ATCGAT 4 cut(s) 28, 951, 1911, 2075
Csp6I GTAC 5 cut(s) 675, 1488, 1706, 1956, 2147
CviAII CATG 6 cut(s) 531, 547, 1459, 1946, 2177, 2379
CviQI GTAC 5 cut(s) 675, 1488, 1706, 1956, 2147
DpnI GATC 8 cut(s) 31, 300, 786, 1910, 1981, 2033, 2078, 2311
DpnII GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
EaeI YGGCCR 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 1457, 1801
EarI CTCTTC 2 cut(s) 1457, 1801
Eco24I GRGCYC 1 cut(s) 1778
Eco57I CTGAAG 3 cut(s) 509, 1148, 2171
Eco72I CACGTG 1 cut(s) 1205
Eco81I CCTNAGG 1 cut(s) 2142
EcoT22I ATGCAT 1 cut(s) 1085
EcoT38I GRGCYC 1 cut(s) 1778
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 6 cut(s) 534, 550, 1462, 1949, 2180, 2382
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 1780, 1812
FaqI GGGAC 1 cut(s) 1010
FatI CATG 6 cut(s) 530, 546, 1458, 1945, 2176, 2378
Fnu4HI GCNGC 4 cut(s) 1212, 1613, 2421, 2424
FokI GGATG 7 cut(s) 180, 256, 1181, 1424, 1709, 1771, 2115
FriOI GRGCYC 1 cut(s) 1778
Fsp4HI GCNGC 4 cut(s) 1212, 1613, 2421, 2424
FspBI CTAG 5 cut(s) 33, 204, 1368, 1965, 2048
GlaI GCGC 1 cut(s) 2107
GluI GCNGC 4 cut(s) 1212, 1613, 2421, 2424
GsaI CCCAGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 649
HapII CCGG 1 cut(s) 1189
HhaI GCGC 1 cut(s) 2108
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 534, 550, 1462, 1949, 2180, 2382
Hin6I GCGC 1 cut(s) 2106
HinP1I GCGC 1 cut(s) 2106
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HindIII AAGCTT 1 cut(s) 1670
HinfI GANTC 8 cut(s) 86, 543, 761, 831, 931, 1036, 1433, 2202
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 1 cut(s) 1189
Hpy166II GTNNAC 2 cut(s) 422, 1186
Hpy8I GTNNAC 2 cut(s) 422, 1186
Hpy99I CGWCG 1 cut(s) 1030
HpyAV CCTTC 5 cut(s) 132, 355, 1272, 1410, 2005
HpyCH4IV ACGT 3 cut(s) 1028, 1204, 2350
HpyCH4V TGCA 8 cut(s) 707, 719, 923, 1083, 1174, 1274, 1892, 1998
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 704, 2057, 2326
HpySE526I ACGT 3 cut(s) 1028, 1204, 2350
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 534, 550, 1462, 1949, 2180, 2382
HspAI GCGC 1 cut(s) 2106
KpnI GGTACC 2 cut(s) 678, 1959
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
LmnI GCTCC 4 cut(s) 124, 697, 1120, 1947
Lsp1109I GCAGC 3 cut(s) 1223, 2432, 2435
LweI GCATC 7 cut(s) 278, 1070, 1510, 1749, 2008, 2060, 2093
MaeI CTAG 5 cut(s) 33, 204, 1368, 1965, 2048
MaeII ACGT 3 cut(s) 1028, 1204, 2350
MaeIII GTNAC 4 cut(s) 154, 517, 1033, 2036
MalI GATC 8 cut(s) 31, 300, 786, 1910, 1981, 2033, 2078, 2311
MboI GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
MfeI CAATTG 2 cut(s) 651, 1827
MflI RGATCY 2 cut(s) 298, 2309
MhlI GDGCHC 3 cut(s) 841, 1471, 1778
MlsI TGGCCA 1 cut(s) 649
MluCI AATT 7 cut(s) 261, 651, 780, 1061, 1250, 1827, 1928
MluNI TGGCCA 1 cut(s) 649
MlyI GAGTC 1 cut(s) 1030
MmeI TCCRAC 3 cut(s) 638, 1289, 2253
Mox20I TGGCCA 1 cut(s) 649
Mph1103I ATGCAT 1 cut(s) 1085
MroXI GAANNNNTTC 2 cut(s) 1603, 2352
MscI TGGCCA 1 cut(s) 649
MslI CAYNNNNRTG 4 cut(s) 633, 714, 1088, 1950
Msp20I TGGCCA 1 cut(s) 649
MspA1I CMGCKG 1 cut(s) 2426
MspCI CTTAAG 2 cut(s) 1451, 2357
MspI CCGG 1 cut(s) 1189
MunI CAATTG 2 cut(s) 651, 1827
MwoI GCNNNNNNNGC 4 cut(s) 266, 704, 2057, 2326
NdeII GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
NlaIII CATG 6 cut(s) 534, 550, 1462, 1949, 2180, 2382
NlaIV GGNNCC 2 cut(s) 676, 1957
NmuCI GTSAC 2 cut(s) 1033, 2036
NsiI ATGCAT 1 cut(s) 1085
PagI TCATGA 1 cut(s) 1458
PdmI GAANNNNTTC 2 cut(s) 1603, 2352
PfeI GAWTC 7 cut(s) 86, 543, 761, 831, 931, 1433, 2202
PkrI GCNGC 4 cut(s) 1213, 1614, 2422, 2425
PleI GAGTC 1 cut(s) 1030
PmaCI CACGTG 1 cut(s) 1205
PmlI CACGTG 1 cut(s) 1205
PpsI GAGTC 1 cut(s) 1030
Ppu21I YACGTR 1 cut(s) 1205
PshAI GACNNNNGTC 1 cut(s) 726
PshBI ATTAAT 1 cut(s) 81
PsiI TTATAA 1 cut(s) 1569
PspCI CACGTG 1 cut(s) 1205
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 676, 1957
PstNI CAGNNNCTG 1 cut(s) 2426
PsuI RGATCY 2 cut(s) 298, 2309
PvuII CAGCTG 1 cut(s) 2426
RsaI GTAC 5 cut(s) 676, 1489, 1707, 1957, 2148
RsaNI GTAC 5 cut(s) 675, 1488, 1706, 1956, 2147
RseI CAYNNNNRTG 4 cut(s) 633, 714, 1088, 1950
SatI GCNGC 4 cut(s) 1212, 1613, 2421, 2424
Sau3AI GATC 8 cut(s) 29, 298, 784, 1908, 1979, 2031, 2076, 2309
SchI GAGTC 1 cut(s) 1030
SduI GDGCHC 3 cut(s) 841, 1471, 1778
SfaNI GCATC 7 cut(s) 278, 1070, 1510, 1749, 2008, 2060, 2093
SmiMI CAYNNNNRTG 4 cut(s) 633, 714, 1088, 1950
SmlI CTYRAG 5 cut(s) 90, 566, 1451, 1634, 2357
SmoI CTYRAG 5 cut(s) 90, 566, 1451, 1634, 2357
SpeI ACTAGT 1 cut(s) 1367
Sse9I AATT 7 cut(s) 261, 651, 780, 1061, 1250, 1827, 1928
SsiI CCGC 3 cut(s) 928, 1613, 2155
SspMI CTAG 5 cut(s) 33, 204, 1368, 1965, 2048
TaiI ACGT 3 cut(s) 1031, 1207, 2353
TasI AATT 7 cut(s) 261, 651, 780, 1061, 1250, 1827, 1928
TatI WGTACW 1 cut(s) 1487
TauI GCSGC 1 cut(s) 1615
TfiI GAWTC 7 cut(s) 86, 543, 761, 831, 931, 1433, 2202
TscAI CASTG 5 cut(s) 559, 1597, 2005, 2041, 2305
TseFI GTSAC 2 cut(s) 1033, 2036
TseI GCWGC 3 cut(s) 1211, 2420, 2423
Tsp45I GTSAC 2 cut(s) 1033, 2036
TspRI CASTG 5 cut(s) 559, 1597, 2005, 2041, 2305
Vha464I CTTAAG 2 cut(s) 1451, 2357
VspI ATTAAT 1 cut(s) 81
XapI RAATTY 1 cut(s) 1061
XmnI GAANNNNTTC 2 cut(s) 1603, 2352
XspI CTAG 5 cut(s) 33, 204, 1368, 1965, 2048
Zsp2I ATGCAT 1 cut(s) 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.