Rroxscaffold_1G00042500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002054
Physical Location & Seq
Forward (+)
60647832 .. 60649809
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042500.1

Sequence Viewer

Length: 1881 bp
ATGGCGAAGAGAGCAGAAACGTCACATTCTCATCGCATATACGAGGAACGAGAAGAGAAACTCGTGTCTTCAAAAGACGGGAAGCAGTTCAGAAGAGTCGCAAGGTTGTGTTCCCGAATTCGAGCAAAGCAGTGGGACCCTCAAATACTCCATTGTTGTCTGACGTCTTTCCTCAAAGTCTTCAACAATGGCCGTCCACGGTTGTGTTCCCGGGTTGCAAGAAGCCCCAGAAAAAATGGGTGGAGTGGCCGGATTGATAGGCTGGCCGGAAAGTACTGTACTATTTGGAACCAAGCTGGGATTTGCGATGCTATTATGAGCTCGAAATATGAGACCAACTTTAACAAGGATTTGGTGCTGGTTTTGGCTGAGTTTTGGTGCTCGGAGACTAATACGTTCGTGTTTGATTGGGGTGGAGCGACGATCACAATGGAGGATGTGATGGTTCTTGGTGGGTTTTCGGTTCTGGGTAAGCTGGTGACATGGCCCATTAATGGGGTGTTGATGGAAACAGTGGAGGAGATGGAGAAGAAGAAGACGGAGCTGACGAGAACTCCAGCAAAGAAAGCTTATCACTTTAACTGGATGAACCATTTTATGAAGCTTCAGGACTACAAGCATGAACATGTGGCATTCCTGTCTCTGTGGTTGGCAAGGTTTGTGTTTCCTTCTCTTCCTGAAGAAAGCTTAGGCAAACATGTGTTTCCAATTGCGGTTCTTTTGTCACAGGGCACTAGAGTTGCTCTGGCTCCTGCAGTTCTTGCAGGGCTTTTCAGAGATTTAAGCTTTTTGAAAAACCAAGCCTTTAAGGGTGAGGTGATAATCTCTGTTTCGAGCCCATTTCAGCTGTTGCAGTTGTGGGCGTTGGAGAGGTTTCAGGGTGTGCTTAAGAGTCCACCAAAGAGACTTAACCCCTGTGAGCCTAGGGCGGCTCGGTGGAACAAAGTGAACATTAAGATTAGTCTCCCTGATGTGAGGAGAGAGATTAATTTGGCTAAGAATTTTCGGTGGCGGCCTTATGCTGCTAAACTGACCAATTGGCGACATGGTTCTTACTACCTAGCTGATAAACTGTGCTTTTATGATAAAACTACGGACCAGAATTTGCAGTCTTATGTTGAATGCTTGTGTTGTGCTGAGTTGGTTGGAGTAGAAGATTGTAAGGAGAAGTATTTGCCGCACAGGGTGGCAATGCAGTTTGGAATTGATCAAGACCTTCCTGGGGATCCTGCTGCATGCTCAGGGTTGGATGTCTGCTCGCGCGGATGCAATCAAAGATGGTGTCAAAGTGGCTGTAAAAAGATTAAGGAGAAGAGTCATCATCACTCCATGGAAGAGAAGAATTTGAAGGCGCATAAGGCATCTACAAAAGCTTTATCAAAGTGTGAACTTGAAAAGAACCACGTCTGTGCTGTGCCTGAAGTCTCAAGAAAATCCAATTGTGTTGTCAGGACACAACCATCAGCCACTGCTCAATTTCCCAAGAACGTCAAGAAAGACTTGTCTCCAAATCATAGTGGTGGTGGCAATATTCCTCTGTTGAAGCAGAGGGGACTTGTGGAAAAGAGACCGACTTGTCTCTGTAATGCTTCTACAACCAGGAAATCCACAAACATTGTTTCGTCACAGTCATGTAACCCAAATAAAAATGTGAAGAAACGGAAGCTGGCCGCACCAACTGAAGAGTTTCCTTCTAAGAAAAGAAATATTAGTGAGTATACCAAAAATCTTTTGATGGTTGCTACAAAAGGGAAGAGGGGTAGTGATATTGCAAATGTTCAAAGTAATGTTAGGATAACGCATGAGCATCAAGTGAGAGCTAAAGTATCAGACGAAGGTTCTCCAAAAGGAGGAAGAAAGCAATGGCTGAAGGGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

626

Amino Acids

71.04

Weight (kDa)

9.69

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 100 - 425 6.6e-84 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1575
AatII GACGTC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 1718
AccII CGCG 2 cut(s) 1261, 1263
AciI CCGC 6 cut(s) 713, 929, 1012, 1178, 1263, 1671
AclWI GGATC 2 cut(s) 1220, 1233
AcoI YGGCCR 4 cut(s) 190, 247, 264, 1668
AcsI RAATTY 4 cut(s) 117, 1000, 1102, 1342
AcuI CTGAAG 4 cut(s) 590, 699, 1440, 1701
AcyI GRCGYC 1 cut(s) 164
AdeI CACNNNGTG 1 cut(s) 1186
AfaI GTAC 2 cut(s) 275, 280
AfiI CCNNNNNNNGG 4 cut(s) 494, 495, 1222, 1850
AflII CTTAAG 1 cut(s) 887
AflIII ACRYGT 2 cut(s) 625, 697
AgsI TTSAA 8 cut(s) 72, 184, 793, 1121, 1348, 1394, 1543, 1781
AjiI CACGTC 1 cut(s) 1405
AjnI CCWGG 2 cut(s) 1219, 1598
AleI CACNNNNGTG 2 cut(s) 202, 1407
Alw21I GWGCWC 2 cut(s) 323, 383
Alw26I GTCTC 9 cut(s) 326, 380, 645, 898, 968, 1429, 1509, 1561, 1583
AlwI GGATC 2 cut(s) 1220, 1233
AlwNI CAGNNNCTG 1 cut(s) 1469
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 6 cut(s) 190, 247, 264, 485, 1013, 1668
ApeKI GCWGC 2 cut(s) 1022, 1232
ApoI RAATTY 4 cut(s) 117, 1000, 1102, 1342
ArsI GACNNNNNNTTYG 2 cut(s) 1267, 1299
AseI ATTAAT 2 cut(s) 492, 987
Asp700I GAANNNNTTC 2 cut(s) 86, 1686
AspA2I CCTAGG 1 cut(s) 923
AspLEI GCGC 2 cut(s) 1263, 1354
AspS9I GGNCC 3 cut(s) 136, 486, 1096
AsuC2I CCSGG 2 cut(s) 211, 212
AsuHPI GGTGA 3 cut(s) 490, 824, 829
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 2 cut(s) 136, 1096
AvrII CCTAGG 1 cut(s) 923
BaeGI GKGCMC 1 cut(s) 734
BamHI GGATCC 1 cut(s) 1225
BanII GRGCYC 2 cut(s) 323, 839
BauI CACGAG 1 cut(s) 62
BbsI GAAGAC 3 cut(s) 60, 172, 542
Bbv12I GWGCWC 2 cut(s) 323, 383
BbvI GCAGC 2 cut(s) 1009, 1219
BccI CCATC 6 cut(s) 436, 499, 517, 1272, 1468, 1729
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 2 cut(s) 1221, 1600
BclI TGATCA 1 cut(s) 1207
BcnI CCSGG 2 cut(s) 211, 212
BcoDI GTCTC 9 cut(s) 326, 380, 645, 898, 968, 1429, 1509, 1561, 1583
BfaI CTAG 3 cut(s) 735, 924, 1061
BfmI CTRYAG 1 cut(s) 753
BfrI CTTAAG 1 cut(s) 887
BisI GCNGC 6 cut(s) 930, 1013, 1023, 1178, 1233, 1671
BlnI CCTAGG 1 cut(s) 923
BlsI GCNGC 6 cut(s) 931, 1014, 1024, 1179, 1234, 1672
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 4 cut(s) 211, 212, 1221, 1600
Bme18I GGWCC 2 cut(s) 136, 1096
BmeT110I CYCGRG 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 1405
BmgT120I GGNCC 3 cut(s) 136, 486, 1096
BmiI GGNNCC 5 cut(s) 137, 138, 290, 750, 1227
BmrFI CCNGG 4 cut(s) 211, 212, 1221, 1600
BmsI GCATC 4 cut(s) 298, 1256, 1370, 1816
BpiI GAAGAC 3 cut(s) 60, 172, 542
BpmI CTGGAG 1 cut(s) 540
Bpu10I CCTNAGC 2 cut(s) 688, 1240
BpuEI CTTGAG 1 cut(s) 1411
BpuMI CCSGG 2 cut(s) 211, 212
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 2 cut(s) 326, 1561
BsaJI CCNNGG 5 cut(s) 197, 210, 923, 1220, 1329
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 4 cut(s) 494, 495, 1222, 1850
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 2 cut(s) 1197, 1868
BseBI CCWGG 2 cut(s) 1221, 1600
BseDI CCNNGG 5 cut(s) 197, 210, 923, 1220, 1329
BseGI GGATG 4 cut(s) 442, 591, 1255, 1271
BseLI CCNNNNNNNGG 4 cut(s) 494, 495, 1222, 1850
BseMI GCAATG 2 cut(s) 1197, 1868
BseMII CTCAG 3 cut(s) 360, 1128, 1254
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 533, 991
BseSI GKGCMC 1 cut(s) 734
BseXI GCAGC 2 cut(s) 1009, 1219
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 2 cut(s) 1261, 1263
BshFI GGCC 6 cut(s) 192, 249, 266, 487, 1015, 1670
BsiHKAI GWGCWC 2 cut(s) 323, 383
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 3 cut(s) 211, 250, 267
BslFI GGGAC 2 cut(s) 149, 1566
BslI CCNNNNNNNGG 4 cut(s) 494, 495, 1222, 1850
BsmAI GTCTC 9 cut(s) 326, 380, 645, 898, 968, 1429, 1509, 1561, 1583
BsmFI GGGAC 2 cut(s) 149, 1566
BsmI GAATGC 2 cut(s) 632, 1127
BsnI GGCC 6 cut(s) 192, 249, 266, 487, 1015, 1670
Bso31I GGTCTC 2 cut(s) 326, 1561
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 4 cut(s) 323, 383, 734, 839
Bsp143I GATC 3 cut(s) 423, 1207, 1225
Bsp19I CCATGG 1 cut(s) 1329
BspACI CCGC 6 cut(s) 713, 929, 1012, 1178, 1263, 1671
BspANI GGCC 6 cut(s) 192, 249, 266, 487, 1015, 1670
BspCNI CTCAG 3 cut(s) 361, 1129, 1253
BspFNI CGCG 2 cut(s) 1261, 1263
BspLI GGNNCC 5 cut(s) 137, 138, 290, 750, 1227
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 2 cut(s) 1220, 1233
BspTI CTTAAG 1 cut(s) 887
BspTNI GGTCTC 2 cut(s) 326, 1561
BsrDI GCAATG 2 cut(s) 1197, 1868
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 5 cut(s) 197, 210, 923, 1220, 1329
BssMI GATC 3 cut(s) 423, 1207, 1225
BssNAI GTATAC 1 cut(s) 1719
BssNI GRCGYC 1 cut(s) 164
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 923, 1329
Bst1107I GTATAC 1 cut(s) 1719
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 1221, 1600
Bst4CI ACNGT 5 cut(s) 201, 278, 514, 1074, 1629
Bst6I CTCTTC 8 cut(s) 2, 48, 88, 678, 1307, 1329, 1677, 1748
BstACI GRCGYC 1 cut(s) 164
BstAFI CTTAAG 1 cut(s) 887
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 264, 1237, 1259, 1668
BstDEI CTNAG 6 cut(s) 369, 688, 996, 1137, 1240, 1695
BstDSI CCRYGG 2 cut(s) 197, 1329
BstF5I GGATG 4 cut(s) 442, 591, 1255, 1271
BstFNI CGCG 2 cut(s) 1261, 1263
BstHHI GCGC 2 cut(s) 1263, 1354
BstKTI GATC 3 cut(s) 426, 1210, 1228
BstMAI GTCTC 9 cut(s) 326, 380, 645, 898, 968, 1429, 1509, 1561, 1583
BstMBI GATC 3 cut(s) 423, 1207, 1225
BstMWI GCNNNNNNNGC 4 cut(s) 11, 566, 761, 1358
BstNI CCWGG 2 cut(s) 1221, 1600
BstNSI RCATGY 3 cut(s) 629, 701, 1239
BstSCI CCNGG 4 cut(s) 209, 210, 1219, 1598
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 734
BstUI CGCG 2 cut(s) 1261, 1263
BstV1I GCAGC 2 cut(s) 1009, 1219
BstV2I GAAGAC 3 cut(s) 60, 172, 542
BstX2I RGATCY 1 cut(s) 1225
BstYI RGATCY 1 cut(s) 1225
BstZ17I GTATAC 1 cut(s) 1719
BsuRI GGCC 6 cut(s) 192, 249, 266, 487, 1015, 1670
BtgI CCRYGG 2 cut(s) 197, 1329
BtgZI GCGATG 2 cut(s) 17, 321
BtrI CACGTC 1 cut(s) 1405
BtsCI GGATG 4 cut(s) 442, 591, 1255, 1271
BtsI GCAGTG 2 cut(s) 137, 1467
BtsIMutI CAGTG 3 cut(s) 137, 519, 1467
Cac8I GCNNGC 4 cut(s) 264, 1237, 1259, 1668
CaiI CAGNNNCTG 1 cut(s) 1469
CfoI GCGC 2 cut(s) 1263, 1354
Cfr13I GGNCC 3 cut(s) 136, 486, 1096
Cfr9I CCCGGG 1 cut(s) 210
Csp6I GTAC 2 cut(s) 274, 279
CspCI CAANNNNNGTGG 2 cut(s) 1597, 1632
CviAII CATG 9 cut(s) 483, 620, 626, 698, 1046, 1236, 1330, 1632, 1802
CviQI GTAC 2 cut(s) 274, 279
DdeI CTNAG 6 cut(s) 369, 688, 996, 1137, 1240, 1695
DpnI GATC 3 cut(s) 425, 1209, 1227
DpnII GATC 3 cut(s) 423, 1207, 1225
DraIII CACNNNGTG 1 cut(s) 1186
DrdI GACNNNNNNGTC 1 cut(s) 1575
DseDI GACNNNNNNGTC 1 cut(s) 1575
EaeI YGGCCR 4 cut(s) 190, 247, 264, 1668
Eam1104I CTCTTC 8 cut(s) 2, 48, 88, 678, 1307, 1329, 1677, 1748
EarI CTCTTC 8 cut(s) 2, 48, 88, 678, 1307, 1329, 1677, 1748
Ecl136II GAGCTC 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 923, 1329
Eco24I GRGCYC 2 cut(s) 323, 839
Eco31I GGTCTC 2 cut(s) 326, 1561
Eco47I GGWCC 2 cut(s) 136, 1096
Eco53kI GAGCTC 1 cut(s) 321
Eco57I CTGAAG 4 cut(s) 590, 699, 1440, 1701
Eco88I CYCGRG 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 2 cut(s) 1219, 1598
EcoT14I CCWWGG 2 cut(s) 923, 1329
EcoT38I GRGCYC 2 cut(s) 323, 839
ErhI CCWWGG 2 cut(s) 923, 1329
FaeI CATG 9 cut(s) 486, 623, 629, 701, 1049, 1239, 1333, 1635, 1805
FalI AAGNNNNNCTT 2 cut(s) 1484, 1516
FaqI GGGAC 2 cut(s) 149, 1566
FatI CATG 9 cut(s) 482, 619, 625, 697, 1045, 1235, 1329, 1631, 1801
FbaI TGATCA 1 cut(s) 1207
FblI GTMKAC 1 cut(s) 1718
Fnu4HI GCNGC 6 cut(s) 930, 1013, 1023, 1178, 1233, 1671
FokI GGATG 4 cut(s) 449, 598, 1262, 1278
FriOI GRGCYC 2 cut(s) 323, 839
Fsp4HI GCNGC 6 cut(s) 930, 1013, 1023, 1178, 1233, 1671
FspBI CTAG 3 cut(s) 735, 924, 1061
GlaI GCGC 2 cut(s) 1262, 1353
GluI GCNGC 6 cut(s) 930, 1013, 1023, 1178, 1233, 1671
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 6 cut(s) 192, 249, 266, 487, 1015, 1670
HapII CCGG 3 cut(s) 211, 250, 267
HhaI GCGC 2 cut(s) 1263, 1354
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 9 cut(s) 486, 623, 629, 701, 1049, 1239, 1333, 1635, 1805
Hin6I GCGC 2 cut(s) 1261, 1352
HinP1I GCGC 2 cut(s) 1261, 1352
HindIII AAGCTT 5 cut(s) 567, 602, 685, 784, 1371
HinfI GANTC 3 cut(s) 96, 892, 1315
HpaII CCGG 3 cut(s) 211, 250, 267
HphI GGTGA 3 cut(s) 490, 824, 829
Hpy166II GTNNAC 5 cut(s) 197, 896, 949, 1388, 1719
Hpy188I TCNGA 6 cut(s) 92, 162, 385, 776, 1831, 1880
Hpy188III TCNNGA 7 cut(s) 114, 608, 677, 1211, 1428, 1450, 1492
Hpy8I GTNNAC 5 cut(s) 197, 896, 949, 1388, 1719
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 6 cut(s) 678, 1226, 1342, 1701, 1829, 1864
HpyCH4III ACNGT 5 cut(s) 201, 278, 514, 1074, 1629
HpyCH4IV ACGT 5 cut(s) 20, 164, 395, 1404, 1488
HpyCH4V TGCA 9 cut(s) 218, 755, 764, 853, 1108, 1195, 1235, 1269, 1772
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 566, 761, 1358
HpyF3I CTNAG 6 cut(s) 369, 688, 996, 1137, 1240, 1695
HpySE526I ACGT 5 cut(s) 20, 164, 395, 1404, 1488
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 9 cut(s) 486, 623, 629, 701, 1049, 1239, 1333, 1635, 1805
HspAI GCGC 2 cut(s) 1261, 1352
KflI GGGWCCC 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 1207
Kzo9I GATC 3 cut(s) 423, 1207, 1225
LmnI GCTCC 3 cut(s) 416, 541, 754
Lsp1109I GCAGC 2 cut(s) 1009, 1219
LweI GCATC 4 cut(s) 298, 1256, 1370, 1816
MaeI CTAG 3 cut(s) 735, 924, 1061
MaeII ACGT 5 cut(s) 20, 164, 395, 1404, 1488
MaeIII GTNAC 5 cut(s) 21, 478, 723, 1623, 1634
MalI GATC 3 cut(s) 425, 1209, 1227
MboI GATC 3 cut(s) 423, 1207, 1225
MfeI CAATTG 3 cut(s) 708, 1036, 1438
MflI RGATCY 1 cut(s) 1225
MhlI GDGCHC 4 cut(s) 323, 383, 734, 839
MlyI GAGTC 3 cut(s) 105, 901, 1324
MmeI TCCRAC 3 cut(s) 846, 1126, 1227
MroXI GAANNNNTTC 2 cut(s) 86, 1686
MslI CAYNNNNRTG 5 cut(s) 202, 624, 1407, 1518, 1630
MspA1I CMGCKG 1 cut(s) 847
MspCI CTTAAG 1 cut(s) 887
MspI CCGG 3 cut(s) 211, 250, 267
MspR9I CCNGG 4 cut(s) 211, 212, 1221, 1600
MunI CAATTG 3 cut(s) 708, 1036, 1438
Mva1269I GAATGC 2 cut(s) 632, 1127
MvaI CCWGG 2 cut(s) 1221, 1600
MvnI CGCG 2 cut(s) 1261, 1263
MwoI GCNNNNNNNGC 4 cut(s) 11, 566, 761, 1358
NciI CCSGG 2 cut(s) 211, 212
NcoI CCATGG 1 cut(s) 1329
NdeII GATC 3 cut(s) 423, 1207, 1225
NlaIII CATG 9 cut(s) 486, 623, 629, 701, 1049, 1239, 1333, 1635, 1805
NlaIV GGNNCC 5 cut(s) 137, 138, 290, 750, 1227
NmuCI GTSAC 4 cut(s) 21, 478, 723, 1623
NspI RCATGY 3 cut(s) 629, 701, 1239
OliI CACNNNNGTG 2 cut(s) 202, 1407
PaeI GCATGC 1 cut(s) 1239
PciI ACATGT 2 cut(s) 625, 697
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 2 cut(s) 632, 1127
PdmI GAANNNNTTC 2 cut(s) 86, 1686
PkrI GCNGC 6 cut(s) 931, 1014, 1024, 1179, 1234, 1672
PleI GAGTC 3 cut(s) 104, 900, 1323
PpsI GAGTC 3 cut(s) 104, 900, 1323
PpuMI RGGWCCY 1 cut(s) 136
PscI ACATGT 2 cut(s) 625, 697
PshBI ATTAAT 2 cut(s) 492, 987
Psp124BI GAGCTC 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 1219, 1598
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 1219, 1598
PspN4I GGNNCC 5 cut(s) 137, 138, 290, 750, 1227
PspPI GGNCC 3 cut(s) 136, 486, 1096
PspPPI RGGWCCY 1 cut(s) 136
PstI CTGCAG 1 cut(s) 757
PstNI CAGNNNCTG 1 cut(s) 1469
PsuI RGATCY 1 cut(s) 1225
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 2 cut(s) 275, 280
RsaNI GTAC 2 cut(s) 274, 279
RseI CAYNNNNRTG 5 cut(s) 202, 624, 1407, 1518, 1630
SacI GAGCTC 1 cut(s) 323
SatI GCNGC 6 cut(s) 930, 1013, 1023, 1178, 1233, 1671
Sau3AI GATC 3 cut(s) 423, 1207, 1225
Sau96I GGNCC 3 cut(s) 136, 486, 1096
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 3 cut(s) 105, 901, 1324
ScrFI CCNGG 4 cut(s) 211, 212, 1221, 1600
SduI GDGCHC 4 cut(s) 323, 383, 734, 839
SfaNI GCATC 4 cut(s) 298, 1256, 1370, 1816
SfcI CTRYAG 1 cut(s) 753
SinI GGWCC 2 cut(s) 136, 1096
SmaI CCCGGG 1 cut(s) 212
SmiMI CAYNNNNRTG 5 cut(s) 202, 624, 1407, 1518, 1630
SmlI CTYRAG 2 cut(s) 887, 1426
SmoI CTYRAG 2 cut(s) 887, 1426
SphI GCATGC 1 cut(s) 1239
SsiI CCGC 6 cut(s) 713, 929, 1012, 1178, 1263, 1671
SspI AATATT 2 cut(s) 1531, 1708
SspMI CTAG 3 cut(s) 735, 924, 1061
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 209, 210, 1219, 1598
StyI CCWWGG 2 cut(s) 923, 1329
TaaI ACNGT 5 cut(s) 201, 278, 514, 1074, 1629
TaiI ACGT 5 cut(s) 23, 167, 398, 1407, 1491
TaqI TCGA 3 cut(s) 121, 323, 833
TaqII GACCGA 1 cut(s) 1585
TatI WGTACW 2 cut(s) 273, 278
TauI GCSGC 4 cut(s) 932, 1015, 1180, 1673
TscAI CASTG 3 cut(s) 137, 519, 1474
TseFI GTSAC 4 cut(s) 21, 478, 723, 1623
TseI GCWGC 2 cut(s) 1022, 1232
Tsp45I GTSAC 4 cut(s) 21, 478, 723, 1623
TspDTI ATGAA 3 cut(s) 602, 614, 636
TspGWI ACGGA 3 cut(s) 554, 1109, 1675
TspMI CCCGGG 1 cut(s) 210
TspRI CASTG 3 cut(s) 137, 519, 1474
Vha464I CTTAAG 1 cut(s) 887
VpaK11BI GGWCC 2 cut(s) 136, 1096
VspI ATTAAT 2 cut(s) 492, 987
XapI RAATTY 4 cut(s) 117, 1000, 1102, 1342
XceI RCATGY 3 cut(s) 629, 701, 1239
XmaI CCCGGG 1 cut(s) 210
XmaJI CCTAGG 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 1718
XmnI GAANNNNTTC 2 cut(s) 86, 1686
XspI CTAG 3 cut(s) 735, 924, 1061
ZraI GACGTC 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.