RLG00000033857

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002054
Physical Location & Seq
Reverse (-)
33259159 .. 33260517
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033857

Sequence Viewer

Length: 1020 bp
ATGCAGTTTGGAATTGATCAAGACCTTCCTGGGGATCCTGCTGCATGCTCAGGGTTGGAAGAGAAGAATTTCAAGGCGCATAAGGCATCTACAAAAGCTTTATCAAAGTGTGAACTTGAAAAGAACCACTTCTGTGCTGTGCCTGAAGTCTCAACAAAATCCAATTGTGCTGTCAGGACACAACCCTCAGCCACTGCTCAATTTCCCAAGATGGTCAAGAAAGATTTGTCTCCAAATCGTAGTGGTGGTGGCAACATTCCTCTGTTTCAACAGAGGAGACTTGTGGGAAAGACACTGGCTTGTCTCCGTAATGCTTCCACAACCGGGAAATCCACAAACGTTGTTTCCCCACAGTCACGTAACCCAAATGAAAATGTGAACAAAAGGAAGCTGGCCACACCAACTGAAGAGTTCCCTGCTAAGAAAAGAAATATTAGTGAGTATAACAAAAATCTTTTGATGGTTGCTACAAAAGGGATGAAGGGTAGTGATATTGCAAATGTTCGAAGTAATGTCAGGATAACGCATGAGCATCAAGTTAGAGCTAAAGTATCAGACAAAGGTTATGCAAAAGGTGGGAAGAAAGCAATGGCTGAAGGGTCTCTTAAGAAACCCATGGGAGCTGATGGCCGTAAAGTGAAACAATCTGAAAGGTGTGCTGCAAAAGTTGGGAAGAAAGCAATGTCTGAAAGGTCTCTGAAGAAACCCATGGAGGCTGATGGACATAAAGTGAAACAATCCAAAAGGGGTGCTGTGAAAGAAGTCAAGAGAACAATGGAGAATGCTAGAACTAAAACTCAGAAAGATGGATTACTGATGAGGGTTCAGAAACTGCTGAATACTTACAATGAGAAGCTGTTTGTTAACCAATTAGTTAATACACTTTTTTATGATGGTATTGATGTGATCACAAATGCTGTCTGGTATGATTTTTATACATTGGTTCATATGGTTGTTGCCAATGTTGTGTTGGATACCAGGTTCGATACTTTTTTAGCAGAGAACAACAGAAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

340

Amino Acids

37.62

Weight (kDa)

9.98

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 339
AclWI GGATC 2 cut(s) 29, 42
AcoI YGGCCR 2 cut(s) 393, 628
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 4 cut(s) 165, 426, 615, 719
AfiI CCNNNNNNNGG 2 cut(s) 31, 324
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 3 cut(s) 73, 119, 269
AjnI CCWGG 2 cut(s) 28, 977
AleI CACNNNNGTG 1 cut(s) 132
AloI GAACNNNNNNTCC 2 cut(s) 965, 997
AluBI AGCT 5 cut(s) 98, 391, 545, 623, 856
AluI AGCT 5 cut(s) 98, 391, 545, 623, 856
Alw26I GTCTC 6 cut(s) 154, 234, 271, 308, 606, 699
AlwI GGATC 2 cut(s) 29, 42
AlwNI CAGNNNCTG 2 cut(s) 194, 832
AoxI GGCC 2 cut(s) 393, 628
ApeKI GCWGC 2 cut(s) 41, 659
ApoI RAATTY 1 cut(s) 67
Asp700I GAANNNNTTC 2 cut(s) 68, 128
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 325
AsuII TTCGAA 1 cut(s) 505
BalI TGGCCA 1 cut(s) 395
BamHI GGATCC 1 cut(s) 34
BbvCI CCTCAGC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 28, 646
BccI CCATC 6 cut(s) 205, 454, 620, 713, 800, 887
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 2 cut(s) 30, 979
BciVI GTATCC 1 cut(s) 967
BclI TGATCA 2 cut(s) 16, 906
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 6 cut(s) 154, 234, 271, 308, 606, 699
BfaI CTAG 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 605
BfuI GTATCC 1 cut(s) 967
BisI GCNGC 2 cut(s) 42, 660
BlsI GCNGC 2 cut(s) 43, 661
Bme1390I CCNGG 3 cut(s) 30, 325, 979
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 30, 325, 979
BmsI GCATC 2 cut(s) 95, 541
Bpu10I CCTNAGC 2 cut(s) 49, 187
Bpu14I TTCGAA 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 359
BsaI GGTCTC 2 cut(s) 606, 699
BsaJI CCNNGG 3 cut(s) 29, 615, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 324
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 2 cut(s) 594, 687
BseBI CCWGG 2 cut(s) 30, 979
BseDI CCNNGG 3 cut(s) 29, 615, 708
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 31, 324
BseMI GCAATG 2 cut(s) 594, 687
BseMII CTCAG 3 cut(s) 63, 201, 812
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 28, 646
BshFI GGCC 2 cut(s) 395, 630
BsiSI CCGG 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 31, 324
BsmAI GTCTC 6 cut(s) 154, 234, 271, 308, 606, 699
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 2 cut(s) 395, 630
Bso31I GGTCTC 2 cut(s) 606, 699
Bsp119I TTCGAA 1 cut(s) 505
Bsp143I GATC 3 cut(s) 16, 34, 906
Bsp19I CCATGG 2 cut(s) 615, 708
BspANI GGCC 2 cut(s) 395, 630
BspCNI CTCAG 3 cut(s) 62, 200, 811
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 2 cut(s) 29, 42
BspT104I TTCGAA 1 cut(s) 505
BspTI CTTAAG 1 cut(s) 605
BspTNI GGTCTC 2 cut(s) 606, 699
BsrDI GCAATG 2 cut(s) 594, 687
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 3 cut(s) 29, 615, 708
BssMI GATC 3 cut(s) 16, 34, 906
BssT1I CCWWGG 2 cut(s) 615, 708
Bst2UI CCWGG 2 cut(s) 30, 979
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 2 cut(s) 54, 402
BstAFI CTTAAG 1 cut(s) 605
BstBAI YACGTR 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 46, 393
BstDEI CTNAG 4 cut(s) 49, 187, 420, 798
BstDSI CCRYGG 2 cut(s) 615, 708
BstF5I GGATG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 3 cut(s) 19, 37, 909
BstMAI GTCTC 6 cut(s) 154, 234, 271, 308, 606, 699
BstMBI GATC 3 cut(s) 16, 34, 906
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 2 cut(s) 30, 979
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 3 cut(s) 28, 323, 977
BstV1I GCAGC 2 cut(s) 28, 646
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 2 cut(s) 395, 630
BtgI CCRYGG 2 cut(s) 615, 708
BtsCI GGATG 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 293
Cac8I GCNNGC 2 cut(s) 46, 393
CaiI CAGNNNCTG 2 cut(s) 194, 832
CfoI GCGC 1 cut(s) 79
CsiI ACCWGGT 1 cut(s) 977
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 4 cut(s) 45, 527, 616, 709
DdeI CTNAG 4 cut(s) 49, 187, 420, 798
DpnI GATC 3 cut(s) 18, 36, 908
DpnII GATC 3 cut(s) 16, 34, 906
EaeI YGGCCR 2 cut(s) 393, 628
Eam1104I CTCTTC 2 cut(s) 54, 402
EarI CTCTTC 2 cut(s) 54, 402
Eco130I CCWWGG 2 cut(s) 615, 708
Eco31I GGTCTC 2 cut(s) 606, 699
Eco57I CTGAAG 4 cut(s) 165, 426, 615, 719
EcoRII CCWGG 2 cut(s) 28, 977
EcoT14I CCWWGG 2 cut(s) 615, 708
ErhI CCWWGG 2 cut(s) 615, 708
FaeI CATG 4 cut(s) 48, 530, 619, 712
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 588, 620
FatI CATG 4 cut(s) 44, 526, 615, 708
FauNDI CATATG 1 cut(s) 948
FbaI TGATCA 2 cut(s) 16, 906
Fnu4HI GCNGC 2 cut(s) 42, 660
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 42, 660
FspBI CTAG 1 cut(s) 786
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 42, 660
HaeIII GGCC 2 cut(s) 395, 630
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 79
Hin1II CATG 4 cut(s) 48, 530, 619, 712
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HindIII AAGCTT 1 cut(s) 96
HpaI GTTAAC 1 cut(s) 865
HpaII CCGG 1 cut(s) 324
Hpy166II GTNNAC 3 cut(s) 113, 379, 865
Hpy188I TCNGA 6 cut(s) 556, 649, 688, 699, 801, 828
Hpy188III TCNNGA 5 cut(s) 20, 175, 217, 517, 766
Hpy8I GTNNAC 3 cut(s) 113, 379, 865
HpyAV CCTTC 3 cut(s) 35, 475, 590
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4IV ACGT 2 cut(s) 339, 358
HpyCH4V TGCA 5 cut(s) 4, 44, 497, 569, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 4 cut(s) 49, 187, 420, 798
HpySE526I ACGT 2 cut(s) 339, 358
Hsp92II CATG 4 cut(s) 48, 530, 619, 712
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 2 cut(s) 16, 906
KspAI GTTAAC 1 cut(s) 865
Kzo9I GATC 3 cut(s) 16, 34, 906
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 2 cut(s) 28, 646
LweI GCATC 2 cut(s) 95, 541
MabI ACCWGGT 1 cut(s) 977
MaeI CTAG 1 cut(s) 786
MaeII ACGT 2 cut(s) 339, 358
MaeIII GTNAC 2 cut(s) 354, 359
MalI GATC 3 cut(s) 18, 36, 908
MboI GATC 3 cut(s) 16, 34, 906
MboII GAAGA 6 cut(s) 71, 76, 419, 592, 685, 712
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 5 cut(s) 12, 67, 163, 200, 869
MluNI TGGCCA 1 cut(s) 395
MmeI TCCRAC 2 cut(s) 36, 951
MnlI CCTC 5 cut(s) 196, 267, 270, 706, 813
Mox20I TGGCCA 1 cut(s) 395
MroXI GAANNNNTTC 2 cut(s) 68, 128
MscI TGGCCA 1 cut(s) 395
MseI TTAA 3 cut(s) 606, 864, 876
MslI CAYNNNNRTG 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 3 cut(s) 30, 325, 979
MunI CAATTG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 787
MvaI CCWGG 2 cut(s) 30, 979
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 325
NcoI CCATGG 2 cut(s) 615, 708
NdeI CATATG 1 cut(s) 948
NdeII GATC 3 cut(s) 16, 34, 906
NlaIII CATG 4 cut(s) 48, 530, 619, 712
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 354
NspI RCATGY 1 cut(s) 48
NspV TTCGAA 1 cut(s) 505
OliI CACNNNNGTG 1 cut(s) 132
PaeI GCATGC 1 cut(s) 48
PctI GAATGC 1 cut(s) 787
PdmI GAANNNNTTC 2 cut(s) 68, 128
PkrI GCNGC 2 cut(s) 43, 661
Ppu21I YACGTR 1 cut(s) 359
Psp1406I AACGTT 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 28, 977
PspGI CCWGG 2 cut(s) 28, 977
PspN4I GGNNCC 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 194, 832
PsuI RGATCY 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 606, 864, 876
SatI GCNGC 2 cut(s) 42, 660
Sau3AI GATC 3 cut(s) 16, 34, 906
ScrFI CCNGG 3 cut(s) 30, 325, 979
SexAI ACCWGGT 1 cut(s) 977
SfaNI GCATC 2 cut(s) 95, 541
SfuI TTCGAA 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SphI GCATGC 1 cut(s) 48
Sse9I AATT 5 cut(s) 12, 67, 163, 200, 869
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 28, 323, 977
StyI CCWWGG 2 cut(s) 615, 708
TaaI ACNGT 1 cut(s) 354
TaiI ACGT 2 cut(s) 342, 361
TaqI TCGA 2 cut(s) 505, 984
TasI AATT 5 cut(s) 12, 67, 163, 200, 869
Tru1I TTAA 3 cut(s) 606, 864, 876
Tru9I TTAA 3 cut(s) 606, 864, 876
TscAI CASTG 2 cut(s) 199, 300
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 2 cut(s) 41, 659
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 3 cut(s) 384, 494, 935
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 2 cut(s) 199, 300
Vha464I CTTAAG 1 cut(s) 605
XapI RAATTY 1 cut(s) 67
XceI RCATGY 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 967
XmnI GAANNNNTTC 2 cut(s) 68, 128
XspI CTAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.