AT1G50770

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002054
Physical Location & Seq
Reverse (-)
18818459 .. 18820503
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50770.1

Sequence Viewer

Length: 1899 bp
ATGGTTTTACCCACTGAAAACAGTTCACCAAGAAGCAGCAAAAAACCCCATCTTTTAAAACCTTGTAACAACACTTCCATTGATGGATCTGAAACTCCTCAAAATCGTTCAGCTCCTTCTCCTCCTGAATTAAAGTTTCTGTCTTTCAGTGTCTCCTTCAATGGGTGGAGGTTTCCAAACAAAAATTTCAAGTCTTGGGCTAGAAAAATGGCTGCTTTACACGAACCCATTTGGAGAAAAGCTGGCATTTTCGAAGCCGTCACAGCATCCACATACAAAATCAACCCAAACACAGAGCTCGTTCTGGGTATTGCTGAGAAATGGTGTCCTGACACCAAAACCTTTGTTTTCCCTTGGGGTGAAACAACCATAACACTTGAAGATGTTATGTTGCTTTTAGGGTTCTCTGTTTTAGGTTCACCGGTTTTTGTAACTCTGGATAGCTCAGGAGAGATTATTAGGGAGAAGCTGGAGAAAGAATGGAAGAAGGTTAAGAAAGATAAAGGCAATGCAACCCAAAGAACATGGAAGGAGAGATTCATGGACAGTGGTGATGAGCTTGAGCATGTGGCTTTCTTAGTGTTGTGGCTTAGCTACTTTGTTTTTCCATCGCGCTATTATCATATCTATGGAGCTATTCTGCCCATTGCTGTTCATCTTTCAAGCGACAATGATGAAGTAGATGGTAGACTCACCATTGCTCAAATGGTGGGACCTAGTAAGAAGAAATATAGTGATGTTAAGAATGGTGGACGAGATACCTCTGAACCGCTTGGTAAAAAATGTAGAGTTGAGGTGGATAACAATGATTCGGGCCCTTGTCAAAAGCTTGCTTCGACAAGTTATGATGGAAATGAAACTGTACCGCCATCAGAAATAGAGAAAAAGAATGAAGCCACTGATGAAACTGGAAGCAAAGCAGGTAAGAATGTTGTGTCACCACCAGAGACAAGGAAAACCTGTGATGGTGAGCTTGATGCAAGTAAAAGTAATGCTGATATGATCAATGATGGCAGCAAGCAACCAAAGTGTTTGCTCCACGAAGATGGTATCATAGCAGGAGAAAAGGCAAGTTCAGATGAGAAATTGTGCGGTAGTGAAGCTGCAAAGGAAGATGATATTGTTGATGATGACATTATGATTAACAACAATGAACCAGTCTCTCATCAACAGCATGCTTCTGGAGGCACTAAAGGAGATGAAACAAGCAGAGCATATGAGAGTGTGGTTCTGAGCCCATCTGATGAGTCAAACATTCACATCGCTGTAGCGGAAGGAAGTCAGGGACATGAGCAAAGGTGCGAAGAGAATGGTGAAGAAGAAGCTGGAAGCAAAGGAGGGAATAATACGGTTCTGAGCCCATTTGATGAAAACAACTTTTCAGATCCTCCTTTTGGTGCTAATGACACTGTTGTGTCTCCACGAGAGACAAGAAAAACCTGTCATGATGAGCTTAATGTATATGAAAGCAATGAAGATATAATCAATGATGGCAGCAAGGAGCCAGACTGTTTGCTCCATGAAGATGGTAGCATAGCAGGAGAAAAGACGAGCTCAGATGAGAATTTCTGCAGTAGTGAAGCTGAGAAGCAAGAAGAGTCAAACATTCACATCACTGTAGCTGTAGGGGAAGGAAATCAAGGACAAGGCTGTTTGCTTCATGATAATGTCCTCGAGAGTGATGAAACTTTGAAATCCAATGAGGTAAACGAAAAAAGGAACAAGGATTTTGGTGAGGGTGATGATTGCAATGACTCTTACGGAAAGAAATTTCAAGAGCTGAAGGTTGAGGCATTGTCGATAAAGGAGCGTATTCTTAAGGCACAAGAAACTGTGACATGGTTGAAGAAAAGGAGAGCCACAAAACAGAGAGAAATAGCAGTAGCTCGTTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

632

Amino Acids

69.82

Weight (kDa)

4.97

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 82 - 222 2.1e-49 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 911
AccI GTMKAC 1 cut(s) 688
AccII CGCG 1 cut(s) 613
AciI CCGC 4 cut(s) 770, 866, 1092, 1271
AclWI GGATC 2 cut(s) 94, 1379
AcsI RAATTY 3 cut(s) 184, 1564, 1769
AcuI CTGAAG 1 cut(s) 1802
AfaI GTAC 1 cut(s) 864
AfiI CCNNNNNNNGG 2 cut(s) 162, 1394
AflII CTTAAG 1 cut(s) 1817
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 7 cut(s) 160, 190, 380, 663, 1693, 1775, 1846
AleI CACNNNNGTG 1 cut(s) 1412
Alw21I GWGCWC 2 cut(s) 300, 1556
Alw26I GTCTC 5 cut(s) 157, 941, 1165, 1421, 1422
AlwI GGATC 2 cut(s) 94, 1379
Ama87I CYCGRG 1 cut(s) 1673
AoxI GGCC 1 cut(s) 814
ApaI GGGCCC 1 cut(s) 818
ApeKI GCWGC 5 cut(s) 36, 212, 1014, 1103, 1494
ApoI RAATTY 3 cut(s) 184, 1564, 1769
AsiGI ACCGGT 1 cut(s) 421
AspLEI GCGC 1 cut(s) 615
AspS9I GGNCC 3 cut(s) 713, 814, 815
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 1673
AvaII GGWCC 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 818
BanII GRGCYC 5 cut(s) 300, 818, 1238, 1361, 1556
BarI GAAGNNNNNNTAC 2 cut(s) 58, 90
BauI CACGAG 1 cut(s) 1422
Bbv12I GWGCWC 2 cut(s) 300, 1556
BbvI GCAGC 5 cut(s) 48, 199, 1026, 1090, 1506
BceAI ACGGC 1 cut(s) 242
BclI TGATCA 1 cut(s) 1002
BcoDI GTCTC 5 cut(s) 157, 941, 1165, 1421, 1422
BfaI CTAG 2 cut(s) 201, 717
BfmI CTRYAG 4 cut(s) 1266, 1570, 1617, 1623
BfrI CTTAAG 1 cut(s) 1817
BfuAI ACCTGC 1 cut(s) 911
BisI GCNGC 5 cut(s) 37, 213, 1015, 1104, 1495
BlpI GCTNAGC 1 cut(s) 590
BlsI GCNGC 5 cut(s) 38, 214, 1016, 1105, 1496
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 1673
BmgT120I GGNCC 3 cut(s) 713, 814, 815
BmiI GGNNCC 3 cut(s) 714, 816, 1503
BmsI GCATC 2 cut(s) 275, 967
BpmI CTGGAG 2 cut(s) 491, 1203
Bpu10I CCTNAGC 1 cut(s) 445
Bpu1102I GCTNAGC 1 cut(s) 590
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 1394
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 913, 1157
Bse3DI GCAATG 5 cut(s) 514, 645, 696, 1477, 1756
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 162, 1394
BseMI GCAATG 5 cut(s) 514, 645, 696, 1477, 1756
BseMII CTCAG 6 cut(s) 306, 459, 1223, 1346, 1569, 1575
BseNI ACTGG 2 cut(s) 913, 1157
BseRI GAGGAG 2 cut(s) 87, 111
BseSI GKGCMC 1 cut(s) 818
BseXI GCAGC 5 cut(s) 48, 199, 1026, 1090, 1506
Bsh1236I CGCG 1 cut(s) 613
BshFI GGCC 1 cut(s) 816
BshTI ACCGGT 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 300, 1556
BsiHKCI CYCGRG 1 cut(s) 1673
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 2 cut(s) 726, 1299
BslI CCNNNNNNNGG 2 cut(s) 162, 1394
BsmAI GTCTC 5 cut(s) 157, 941, 1165, 1421, 1422
BsmFI GGGAC 2 cut(s) 726, 1299
BsnI GGCC 1 cut(s) 816
BsoBI CYCGRG 1 cut(s) 1673
Bsp119I TTCGAA 1 cut(s) 252
Bsp120I GGGCCC 1 cut(s) 814
Bsp1286I GDGCHC 5 cut(s) 300, 818, 1238, 1361, 1556
Bsp143I GATC 3 cut(s) 86, 1002, 1384
Bsp1720I GCTNAGC 1 cut(s) 590
BspACI CCGC 4 cut(s) 770, 866, 1092, 1271
BspANI GGCC 1 cut(s) 816
BspCNI CTCAG 6 cut(s) 307, 458, 1224, 1347, 1568, 1576
BspFNI CGCG 1 cut(s) 613
BspHI TCATGA 2 cut(s) 1444, 1660
BspLI GGNNCC 3 cut(s) 714, 816, 1503
BspMAI CTGCAG 1 cut(s) 1574
BspMI ACCTGC 1 cut(s) 911
BspPI GGATC 2 cut(s) 94, 1379
BspT104I TTCGAA 1 cut(s) 252
BspTI CTTAAG 1 cut(s) 1817
BsrDI GCAATG 5 cut(s) 514, 645, 696, 1477, 1756
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 2 cut(s) 913, 1157
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 86, 1002, 1384
BssSI CACGAG 1 cut(s) 1422
BssT1I CCWWGG 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 1422
Bst4CI ACNGT 8 cut(s) 23, 548, 862, 1351, 1411, 1511, 1618, 1834
Bst6I CTCTTC 2 cut(s) 1299, 1590
BstAFI CTTAAG 1 cut(s) 1817
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 4 cut(s) 244, 831, 1019, 1176
BstDEI CTNAG 8 cut(s) 315, 445, 577, 590, 1232, 1355, 1555, 1584
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 613
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 3 cut(s) 89, 1005, 1387
BstMAI GTCTC 5 cut(s) 157, 941, 1165, 1421, 1422
BstMBI GATC 3 cut(s) 86, 1002, 1384
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNSI RCATGY 2 cut(s) 569, 1178
BstSFI CTRYAG 4 cut(s) 1266, 1570, 1617, 1623
BstSLI GKGCMC 1 cut(s) 818
BstUI CGCG 1 cut(s) 613
BstV1I GCAGC 5 cut(s) 48, 199, 1026, 1090, 1506
BstX2I RGATCY 2 cut(s) 86, 1384
BstXI CCANNNNNNTGG 2 cut(s) 1046, 1526
BstYI RGATCY 2 cut(s) 86, 1384
BsuRI GGCC 1 cut(s) 816
BtgZI GCGATG 2 cut(s) 594, 1246
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 6 cut(s) 12, 154, 553, 897, 1407, 1614
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 4 cut(s) 244, 831, 1019, 1176
CciI TCATGA 2 cut(s) 1444, 1660
CfoI GCGC 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 3 cut(s) 713, 814, 815
Csp6I GTAC 1 cut(s) 863
CspAI ACCGGT 1 cut(s) 421
CviAII CATG 9 cut(s) 525, 541, 566, 1175, 1289, 1445, 1520, 1661, 1839
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 8 cut(s) 315, 445, 577, 590, 1232, 1355, 1555, 1584
DpnI GATC 3 cut(s) 88, 1004, 1386
DpnII GATC 3 cut(s) 86, 1002, 1384
DraI TTTAAA 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 1299, 1590
EarI CTCTTC 2 cut(s) 1299, 1590
Ecl136II GAGCTC 2 cut(s) 298, 1554
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 5 cut(s) 300, 818, 1238, 1361, 1556
Eco47I GGWCC 1 cut(s) 713
Eco53kI GAGCTC 2 cut(s) 298, 1554
Eco57I CTGAAG 1 cut(s) 1802
Eco88I CYCGRG 1 cut(s) 1673
EcoICRI GAGCTC 2 cut(s) 298, 1554
EcoO109I RGGNCCY 2 cut(s) 713, 815
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 5 cut(s) 300, 818, 1238, 1361, 1556
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 9 cut(s) 528, 544, 569, 1178, 1292, 1448, 1523, 1664, 1842
FaqI GGGAC 2 cut(s) 726, 1299
FatI CATG 9 cut(s) 524, 540, 565, 1174, 1288, 1444, 1519, 1660, 1838
FauNDI CATATG 1 cut(s) 1216
FbaI TGATCA 1 cut(s) 1002
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 5 cut(s) 37, 213, 1015, 1104, 1495
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 5 cut(s) 300, 818, 1238, 1361, 1556
Fsp4HI GCNGC 5 cut(s) 37, 213, 1015, 1104, 1495
FspBI CTAG 2 cut(s) 201, 717
GlaI GCGC 1 cut(s) 614
GluI GCNGC 5 cut(s) 37, 213, 1015, 1104, 1495
GsuI CTGGAG 2 cut(s) 491, 1203
HaeIII GGCC 1 cut(s) 816
HapII CCGG 1 cut(s) 422
HhaI GCGC 1 cut(s) 615
Hin1II CATG 9 cut(s) 528, 544, 569, 1178, 1292, 1448, 1523, 1664, 1842
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 6 cut(s) 537, 690, 809, 1247, 1598, 1754
HpaII CCGG 1 cut(s) 422
Hpy166II GTNNAC 5 cut(s) 26, 419, 689, 752, 1708
Hpy188I TCNGA 9 cut(s) 91, 766, 874, 1078, 1233, 1243, 1356, 1384, 1558
Hpy188III TCNNGA 9 cut(s) 125, 329, 437, 447, 1182, 1445, 1661, 1675, 1775
Hpy8I GTNNAC 5 cut(s) 26, 419, 689, 752, 1708
HpyAV CCTTC 7 cut(s) 126, 166, 481, 523, 1268, 1625, 1777
HpyCH4III ACNGT 8 cut(s) 23, 548, 862, 1351, 1411, 1511, 1618, 1834
HpyCH4V TGCA 5 cut(s) 512, 980, 1106, 1572, 1749
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 8 cut(s) 315, 445, 577, 590, 1232, 1355, 1555, 1584
Hsp92II CATG 9 cut(s) 528, 544, 569, 1178, 1292, 1448, 1523, 1664, 1842
HspAI GCGC 1 cut(s) 613
Ksp22I TGATCA 1 cut(s) 1002
Kzo9I GATC 3 cut(s) 86, 1002, 1384
LmnI GCTCC 6 cut(s) 118, 632, 1041, 1501, 1521, 1807
Lsp1109I GCAGC 5 cut(s) 48, 199, 1026, 1090, 1506
LweI GCATC 2 cut(s) 275, 967
MaeI CTAG 2 cut(s) 201, 717
MaeIII GTNAC 5 cut(s) 65, 259, 430, 936, 1834
MalI GATC 3 cut(s) 88, 1004, 1386
MboI GATC 3 cut(s) 86, 1002, 1384
MflI RGATCY 2 cut(s) 86, 1384
MhlI GDGCHC 5 cut(s) 300, 818, 1238, 1361, 1556
MluCI AATT 5 cut(s) 128, 184, 1085, 1564, 1769
MlyI GAGTC 4 cut(s) 684, 1256, 1607, 1748
MseI TTAA 7 cut(s) 56, 131, 492, 741, 1143, 1455, 1818
MslI CAYNNNNRTG 5 cut(s) 627, 1044, 1412, 1524, 1665
MspCI CTTAAG 1 cut(s) 1817
MspI CCGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 613
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeI CATATG 1 cut(s) 1216
NdeII GATC 3 cut(s) 86, 1002, 1384
NlaIII CATG 9 cut(s) 528, 544, 569, 1178, 1292, 1448, 1523, 1664, 1842
NlaIV GGNNCC 3 cut(s) 714, 816, 1503
NmuCI GTSAC 3 cut(s) 259, 936, 1834
NspI RCATGY 2 cut(s) 569, 1178
NspV TTCGAA 1 cut(s) 252
OliI CACNNNNGTG 1 cut(s) 1412
PaeI GCATGC 1 cut(s) 1178
PaeR7I CTCGAG 1 cut(s) 1673
PagI TCATGA 2 cut(s) 1444, 1660
PfeI GAWTC 2 cut(s) 537, 809
PinAI ACCGGT 1 cut(s) 421
PkrI GCNGC 5 cut(s) 38, 214, 1016, 1105, 1496
PleI GAGTC 4 cut(s) 684, 1255, 1606, 1748
PpsI GAGTC 4 cut(s) 684, 1255, 1606, 1748
PpuMI RGGWCCY 1 cut(s) 713
Psp124BI GAGCTC 2 cut(s) 300, 1556
Psp5II RGGWCCY 1 cut(s) 713
PspN4I GGNNCC 3 cut(s) 714, 816, 1503
PspOMI GGGCCC 1 cut(s) 814
PspPI GGNCC 3 cut(s) 713, 814, 815
PspPPI RGGWCCY 1 cut(s) 713
PstI CTGCAG 1 cut(s) 1574
PsuI RGATCY 2 cut(s) 86, 1384
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
RseI CAYNNNNRTG 5 cut(s) 627, 1044, 1412, 1524, 1665
SacI GAGCTC 2 cut(s) 300, 1556
SaqAI TTAA 7 cut(s) 56, 131, 492, 741, 1143, 1455, 1818
SatI GCNGC 5 cut(s) 37, 213, 1015, 1104, 1495
Sau3AI GATC 3 cut(s) 86, 1002, 1384
Sau96I GGNCC 3 cut(s) 713, 814, 815
SchI GAGTC 4 cut(s) 684, 1256, 1607, 1748
SduI GDGCHC 5 cut(s) 300, 818, 1238, 1361, 1556
SfaNI GCATC 2 cut(s) 275, 967
SfcI CTRYAG 4 cut(s) 1266, 1570, 1617, 1623
Sfr274I CTCGAG 1 cut(s) 1673
SfuI TTCGAA 1 cut(s) 252
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 1673
SmiMI CAYNNNNRTG 5 cut(s) 627, 1044, 1412, 1524, 1665
SmlI CTYRAG 3 cut(s) 560, 1673, 1817
SmoI CTYRAG 3 cut(s) 560, 1673, 1817
SphI GCATGC 1 cut(s) 1178
Sse9I AATT 5 cut(s) 128, 184, 1085, 1564, 1769
SsiI CCGC 4 cut(s) 770, 866, 1092, 1271
SspMI CTAG 2 cut(s) 201, 717
SstI GAGCTC 2 cut(s) 300, 1556
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 8 cut(s) 23, 548, 862, 1351, 1411, 1511, 1618, 1834
TaqI TCGA 4 cut(s) 252, 836, 1674, 1799
TasI AATT 5 cut(s) 128, 184, 1085, 1564, 1769
TfiI GAWTC 2 cut(s) 537, 809
Tru1I TTAA 7 cut(s) 56, 131, 492, 741, 1143, 1455, 1818
Tru9I TTAA 7 cut(s) 56, 131, 492, 741, 1143, 1455, 1818
TscAI CASTG 6 cut(s) 19, 154, 553, 904, 1414, 1621
TseFI GTSAC 3 cut(s) 259, 936, 1834
TseI GCWGC 5 cut(s) 36, 212, 1014, 1103, 1494
Tsp45I GTSAC 3 cut(s) 259, 936, 1834
TspGWI ACGGA 1 cut(s) 1776
TspRI CASTG 6 cut(s) 19, 154, 553, 904, 1414, 1621
Vha464I CTTAAG 1 cut(s) 1817
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 3 cut(s) 184, 1564, 1769
XceI RCATGY 2 cut(s) 569, 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 1673
XmiI GTMKAC 1 cut(s) 688
XspI CTAG 2 cut(s) 201, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.