FvH4_7g03072

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002054
Physical Location & Seq
Forward (+)
3455971 .. 3458109
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03072.t1

Sequence Viewer

Length: 1506 bp
ATGGACACTCCACGCTACTCTTTGATTGAAGAGACCGAAGCGCTTATGGTGGCACCAAATGGCGGAGACCCATTTCAGAAAAACGCCCACTTTCTCAAACCCATTGTGCCTTCCTCCATTGACGAGCCTCCTTTCAAGCTCTCTCACTGTTTCAACTCCCTCCCATCCCATTTCGACCCAAGACTGAAACTTGAGTTCCATGGATGGCCACACCCTCATAAACACTGGACAACATGGGTTGCTCAAATGGCCACTACTCACCAACATACATGGAAGCAAGCTGGTATCTATGAAGCCATCTTCAACTCGACGTACGATATCAAAAGAATGAACAGTTTGGTGTTTGGGTTTGGAGAGAAATGGTGTTGTGAAACCAACACCTTTATGTTTCCTTGGGGTGAAGCAACATTCACATTGGAGGATGTTATGGTTTTGGGTGGCTACTCTGTTTTGGGTGACTCTGTTCTCAAGCCTCTGGAAAACCCAGGGAAAGAATTGGAAGAGAAGCTAGATAGAGAGAGGAAGGAGATTTATAATACTGGGTCCAGGAAGGCTACCACAAGCTTATGGTTGAACAGGTTCATGGGCAGTGGGAGTGAAATTGAGCACCAAGCTTTTCTTGCCTATTGGTTGTGCAGGTATGTTTTTCATGGCGCTTTCAAGTCGATACAAAAGCATGTGTTTTCCATTGCAGTTCATCTAGCTAGGGGGACTGGAATCGCGCTTGCTCCGGCTGTTCTTGCCAGCATTTATAGAGATTTGAGTTTGTTGAAAAATGCTATTGTAGAGTCAAATGAATTAAATGCCACTACTAATGATGATCATGTGTTAAAACTCAATCTTAAGTCACCGTTTCAATTAGTTCAGGTTTGGGGATGGGAAAGGTTTTTGGACATTAGGCCGAAACCCAATGTTATCAGATATGCTGAGCCGAGAATGGCTCGATGGGATAAAGTAAAGGGTCCGAATGTTGAAAACTTGAGTACTGTGTTGGACTCAGCAGGAGAAGGTTTCTTGTGGCGCCCATATGCGATTGCTGTGGAGAATTGGAAATTGCCTAAATACTATGCTGACAAGGAAGAGAGGGTGTTGGTTGGACCAGGTTTGGATGATGAACTATTGTCATTTGCTGTATGCTTGCAGGTGATTCAGTTAGTTGGACTTGGTACTAAGCAACTCTACCTTCCGCATCGAGTGGCTATGCAATTTGGATATGATCAAGACCTTCCATGTTCTGTTGGTCAACTCAGTCACAGTTCTGAGAATGTGAAATTGTATATCCCATCCAGACTTTCTGAGGCAAATGCTAGTGCAAGATACTTGAAGTGGTGGAAGGCCTCGGTGATGGTTGAACACGAGTCTTCGCCACCCAAAAAGAAAGCTAAGAAAACTGCAGTGGGTTCAAAAAAAATGGACAAGATCACTGATGCCACCCTTCCTTGTGTTTATTCTCCAACTAATTCAGATGAATTAGTACAGCTCTTTTTTCCTCCCCTATTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

502

Amino Acids

56.99

Weight (kDa)

7.66

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 95 - 445 3.9e-99 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
AarI CACCTGC 1 cut(s) 1132
Acc36I ACCTGC 2 cut(s) 627, 1132
AccB1I GGYRCC 2 cut(s) 52, 1020
AccII CGCG 1 cut(s) 722
AciI CCGC 2 cut(s) 63, 1187
AcoI YGGCCR 2 cut(s) 206, 249
AcyI GRCGYC 1 cut(s) 1021
AfaI GTAC 4 cut(s) 314, 985, 1168, 1476
AfeI AGCGCT 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 62
AflII CTTAAG 1 cut(s) 842
AjnI CCWGG 3 cut(s) 484, 545, 1099
AluBI AGCT 8 cut(s) 139, 281, 508, 564, 614, 704, 1382, 1480
AluI AGCT 8 cut(s) 139, 281, 508, 564, 614, 704, 1382, 1480
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 2 cut(s) 26, 60
Aor51HI AGCGCT 1 cut(s) 42
AoxI GGCC 4 cut(s) 206, 249, 899, 1335
Asp700I GAANNNNTTC 1 cut(s) 578
AspLEI GCGC 4 cut(s) 43, 656, 724, 1023
AspS9I GGNCC 3 cut(s) 543, 962, 1097
AsuHPI GGTGA 6 cut(s) 251, 410, 467, 840, 1156, 1354
AvaII GGWCC 3 cut(s) 543, 962, 1097
BalI TGGCCA 2 cut(s) 208, 251
BanI GGYRCC 2 cut(s) 52, 1020
BauI CACGAG 1 cut(s) 1355
BbsI GAAGAC 1 cut(s) 1353
Bbv12I GWGCWC 1 cut(s) 609
BccI CCATC 7 cut(s) 172, 198, 305, 870, 939, 1291, 1339
BciT130I CCWGG 3 cut(s) 486, 547, 1101
BclI TGATCA 2 cut(s) 820, 1216
BcoDI GTCTC 2 cut(s) 26, 60
BfaI CTAG 4 cut(s) 509, 701, 705, 1308
BfmI CTRYAG 1 cut(s) 1392
BfoI RGCGCY 3 cut(s) 44, 657, 1024
BfrI CTTAAG 1 cut(s) 842
BfuAI ACCTGC 2 cut(s) 627, 1132
BlpI GCTNAGC 1 cut(s) 927
BmcAI AGTACT 1 cut(s) 985
Bme1390I CCNGG 3 cut(s) 486, 547, 1101
Bme18I GGWCC 3 cut(s) 543, 962, 1097
BmgT120I GGNCC 3 cut(s) 543, 962, 1097
BmiI GGNNCC 4 cut(s) 54, 544, 963, 1022
BmrFI CCNGG 3 cut(s) 486, 547, 1101
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 2 cut(s) 1198, 1417
BmuI ACTGGG 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 1353
BplI GAGNNNNNCTC 2 cut(s) 925, 957
Bpu1102I GCTNAGC 1 cut(s) 927
BpuEI CTTGAG 3 cut(s) 212, 452, 1000
BsaHI GRCGYC 1 cut(s) 1021
BsaI GGTCTC 2 cut(s) 26, 60
BsaJI CCNNGG 5 cut(s) 199, 392, 484, 485, 1338
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 230, 544, 718
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 3 cut(s) 486, 547, 1101
BseDI CCNNGG 5 cut(s) 199, 392, 484, 485, 1338
BseGI GGATG 6 cut(s) 164, 209, 427, 881, 1114, 1283
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 5 cut(s) 918, 1011, 1251, 1261, 1287
BseNI ACTGG 3 cut(s) 230, 544, 718
BsgI GTGCAG 1 cut(s) 655
Bsh1236I CGCG 1 cut(s) 722
BshFI GGCC 4 cut(s) 208, 251, 901, 1337
BshNI GGYRCC 2 cut(s) 52, 1020
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 1 cut(s) 731
BsiWI CGTACG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 26, 60
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 4 cut(s) 208, 251, 901, 1337
Bso31I GGTCTC 2 cut(s) 26, 60
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 3 cut(s) 820, 1216, 1419
Bsp1720I GCTNAGC 1 cut(s) 927
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 2 cut(s) 63, 1187
BspANI GGCC 4 cut(s) 208, 251, 901, 1337
BspCNI CTCAG 5 cut(s) 919, 1010, 1252, 1260, 1288
BspFNI CGCG 1 cut(s) 722
BspLI GGNNCC 4 cut(s) 54, 544, 963, 1022
BspMAI CTGCAG 1 cut(s) 1396
BspMI ACCTGC 2 cut(s) 627, 1132
BspT107I GGYRCC 2 cut(s) 52, 1020
BspTI CTTAAG 1 cut(s) 842
BspTNI GGTCTC 2 cut(s) 26, 60
BsrDI GCAATG 1 cut(s) 687
BsrI ACTGG 3 cut(s) 230, 544, 718
BssECI CCNNGG 5 cut(s) 199, 392, 484, 485, 1338
BssMI GATC 3 cut(s) 820, 1216, 1419
BssNI GRCGYC 1 cut(s) 1021
BssSI CACGAG 1 cut(s) 1355
BssT1I CCWWGG 2 cut(s) 199, 392
Bst2BI CACGAG 1 cut(s) 1355
Bst2UI CCWGG 3 cut(s) 486, 547, 1101
Bst4CI ACNGT 5 cut(s) 149, 335, 852, 988, 1256
Bst6I CTCTTC 3 cut(s) 24, 495, 1074
BstACI GRCGYC 1 cut(s) 1021
BstAFI CTTAAG 1 cut(s) 842
BstC8I GCNNGC 4 cut(s) 279, 726, 745, 1139
BstDEI CTNAG 7 cut(s) 927, 997, 1170, 1247, 1260, 1296, 1383
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 6 cut(s) 164, 209, 427, 881, 1114, 1283
BstFNI CGCG 1 cut(s) 722
BstH2I RGCGCY 3 cut(s) 44, 657, 1024
BstHHI GCGC 4 cut(s) 43, 656, 724, 1023
BstKTI GATC 3 cut(s) 823, 1219, 1422
BstMAI GTCTC 2 cut(s) 26, 60
BstMBI GATC 3 cut(s) 820, 1216, 1419
BstMWI GCNNNNNNNGC 3 cut(s) 248, 620, 740
BstNI CCWGG 3 cut(s) 486, 547, 1101
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 484, 545, 1099
BstSFI CTRYAG 1 cut(s) 1392
BstUI CGCG 1 cut(s) 722
BstV2I GAAGAC 1 cut(s) 1353
BsuRI GGCC 4 cut(s) 208, 251, 901, 1337
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 6 cut(s) 164, 209, 427, 881, 1114, 1283
BtsI GCAGTG 2 cut(s) 595, 1401
BtsIMutI CAGTG 5 cut(s) 145, 223, 595, 1401, 1422
BveI ACCTGC 2 cut(s) 627, 1132
Cac8I GCNNGC 4 cut(s) 279, 726, 745, 1139
CfoI GCGC 4 cut(s) 43, 656, 724, 1023
Cfr13I GGNCC 3 cut(s) 543, 962, 1097
CsiI ACCWGGT 1 cut(s) 1099
Csp6I GTAC 4 cut(s) 313, 984, 1167, 1475
CviAII CATG 8 cut(s) 200, 234, 270, 583, 650, 677, 824, 1230
CviQI GTAC 4 cut(s) 313, 984, 1167, 1475
DdeI CTNAG 7 cut(s) 927, 997, 1170, 1247, 1260, 1296, 1383
DinI GGCGCC 1 cut(s) 1022
DpnI GATC 3 cut(s) 822, 1218, 1421
DpnII GATC 3 cut(s) 820, 1216, 1419
EaeI YGGCCR 2 cut(s) 206, 249
Eam1104I CTCTTC 3 cut(s) 24, 495, 1074
EarI CTCTTC 3 cut(s) 24, 495, 1074
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 199, 392
Eco147I AGGCCT 1 cut(s) 1337
Eco31I GGTCTC 2 cut(s) 26, 60
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 3 cut(s) 543, 962, 1097
Eco47III AGCGCT 1 cut(s) 42
EcoRII CCWGG 3 cut(s) 484, 545, 1099
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 199, 392
EgeI GGCGCC 1 cut(s) 1022
EheI GGCGCC 1 cut(s) 1022
ErhI CCWWGG 2 cut(s) 199, 392
FaeI CATG 8 cut(s) 203, 237, 273, 586, 653, 680, 827, 1233
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FaqI GGGAC 1 cut(s) 724
FatI CATG 8 cut(s) 199, 233, 269, 582, 649, 676, 823, 1229
FauNDI CATATG 1 cut(s) 1027
FbaI TGATCA 2 cut(s) 820, 1216
FokI GGATG 6 cut(s) 151, 216, 434, 888, 1121, 1270
FspBI CTAG 4 cut(s) 509, 701, 705, 1308
GlaI GCGC 4 cut(s) 42, 655, 723, 1022
HaeII RGCGCY 3 cut(s) 44, 657, 1024
HaeIII GGCC 4 cut(s) 208, 251, 901, 1337
HapII CCGG 1 cut(s) 731
HhaI GCGC 4 cut(s) 43, 656, 724, 1023
Hin1I GRCGYC 1 cut(s) 1021
Hin1II CATG 8 cut(s) 203, 237, 273, 586, 653, 680, 827, 1233
Hin6I GCGC 4 cut(s) 41, 654, 722, 1021
HinP1I GCGC 4 cut(s) 41, 654, 722, 1021
HincII GTYRAC 1 cut(s) 1244
HindII GTYRAC 1 cut(s) 1244
HindIII AAGCTT 2 cut(s) 562, 612
HinfI GANTC 6 cut(s) 458, 717, 788, 995, 1147, 1358
HpaII CCGG 1 cut(s) 731
HphI GGTGA 6 cut(s) 251, 410, 467, 840, 1156, 1354
Hpy166II GTNNAC 1 cut(s) 1244
Hpy188I TCNGA 6 cut(s) 78, 920, 966, 1261, 1297, 1465
Hpy188III TCNNGA 3 cut(s) 476, 1220, 1287
Hpy8I GTNNAC 1 cut(s) 1244
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 8 cut(s) 120, 517, 544, 1001, 1193, 1235, 1327, 1445
HpyCH4III ACNGT 5 cut(s) 149, 335, 852, 988, 1256
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 6 cut(s) 636, 692, 1141, 1204, 1313, 1394
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 620, 740
HpyF3I CTNAG 7 cut(s) 927, 997, 1170, 1247, 1260, 1296, 1383
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 1021
Hsp92II CATG 8 cut(s) 203, 237, 273, 586, 653, 680, 827, 1233
HspAI GCGC 4 cut(s) 41, 654, 722, 1021
KasI GGCGCC 1 cut(s) 1020
Ksp22I TGATCA 2 cut(s) 820, 1216
Kzo9I GATC 3 cut(s) 820, 1216, 1419
LmnI GCTCC 1 cut(s) 733
LweI GCATC 2 cut(s) 1198, 1417
MabI ACCWGGT 1 cut(s) 1099
MaeI CTAG 4 cut(s) 509, 701, 705, 1308
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 3 cut(s) 455, 846, 1250
MalI GATC 3 cut(s) 822, 1218, 1421
MboI GATC 3 cut(s) 820, 1216, 1419
MboII GAAGA 5 cut(s) 41, 292, 512, 1091, 1353
MhlI GDGCHC 1 cut(s) 609
MlsI TGGCCA 2 cut(s) 208, 251
MluNI TGGCCA 2 cut(s) 208, 251
Mly113I GGCGCC 1 cut(s) 1021
MlyI GAGTC 4 cut(s) 452, 797, 989, 1367
MmeI TCCRAC 4 cut(s) 972, 1075, 1138, 1478
Mox20I TGGCCA 2 cut(s) 208, 251
MroXI GAANNNNTTC 1 cut(s) 578
MscI TGGCCA 2 cut(s) 208, 251
MseI TTAA 3 cut(s) 800, 830, 843
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 2 cut(s) 208, 251
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 1 cut(s) 731
MspR9I CCNGG 3 cut(s) 486, 547, 1101
MvaI CCWGG 3 cut(s) 486, 547, 1101
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 3 cut(s) 248, 620, 740
NarI GGCGCC 1 cut(s) 1021
NcoI CCATGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 1027
NdeII GATC 3 cut(s) 820, 1216, 1419
NlaIII CATG 8 cut(s) 203, 237, 273, 586, 653, 680, 827, 1233
NlaIV GGNNCC 4 cut(s) 54, 544, 963, 1022
NmeAIII GCCGAG 1 cut(s) 957
NmuCI GTSAC 3 cut(s) 455, 846, 1250
NspI RCATGY 1 cut(s) 680
PaqCI CACCTGC 1 cut(s) 1132
PasI CCCWGGG 1 cut(s) 485
PceI AGGCCT 1 cut(s) 1337
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 2 cut(s) 717, 1147
Pfl23II CGTACG 1 cut(s) 312
PfoI TCCNGGA 1 cut(s) 545
PleI GAGTC 4 cut(s) 452, 796, 989, 1366
PluTI GGCGCC 1 cut(s) 1024
PpsI GAGTC 4 cut(s) 452, 796, 989, 1366
PsiI TTATAA 1 cut(s) 534
Psp6I CCWGG 3 cut(s) 484, 545, 1099
PspGI CCWGG 3 cut(s) 484, 545, 1099
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 4 cut(s) 54, 544, 963, 1022
PspPI GGNCC 3 cut(s) 543, 962, 1097
PstI CTGCAG 1 cut(s) 1396
RsaI GTAC 4 cut(s) 314, 985, 1168, 1476
RsaNI GTAC 4 cut(s) 313, 984, 1167, 1475
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 3 cut(s) 800, 830, 843
Sau3AI GATC 3 cut(s) 820, 1216, 1419
Sau96I GGNCC 3 cut(s) 543, 962, 1097
ScaI AGTACT 1 cut(s) 985
SchI GAGTC 4 cut(s) 452, 797, 989, 1367
ScrFI CCNGG 3 cut(s) 486, 547, 1101
SduI GDGCHC 1 cut(s) 609
SexAI ACCWGGT 1 cut(s) 1099
SfaNI GCATC 2 cut(s) 1198, 1417
SfcI CTRYAG 1 cut(s) 1392
SfoI GGCGCC 1 cut(s) 1022
SinI GGWCC 3 cut(s) 543, 962, 1097
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 4 cut(s) 191, 467, 842, 979
SmoI CTYRAG 4 cut(s) 191, 467, 842, 979
SseBI AGGCCT 1 cut(s) 1337
SsiI CCGC 2 cut(s) 63, 1187
SspDI GGCGCC 1 cut(s) 1020
SspMI CTAG 4 cut(s) 509, 701, 705, 1308
StuI AGGCCT 1 cut(s) 1337
StyD4I CCNGG 3 cut(s) 484, 545, 1099
StyI CCWWGG 2 cut(s) 199, 392
TaaI ACNGT 5 cut(s) 149, 335, 852, 988, 1256
TaiI ACGT 1 cut(s) 314
TaqI TCGA 5 cut(s) 174, 308, 665, 943, 1192
TaqII GACCGA 1 cut(s) 50
TatI WGTACW 2 cut(s) 983, 1474
TfiI GAWTC 2 cut(s) 717, 1147
Tru1I TTAA 3 cut(s) 800, 830, 843
Tru9I TTAA 3 cut(s) 800, 830, 843
TscAI CASTG 5 cut(s) 152, 230, 595, 1401, 1429
TseFI GTSAC 3 cut(s) 455, 846, 1250
Tsp45I GTSAC 3 cut(s) 455, 846, 1250
TspDTI ATGAA 8 cut(s) 306, 344, 571, 638, 686, 810, 1128, 1482
TspRI CASTG 5 cut(s) 152, 230, 595, 1401, 1429
Vha464I CTTAAG 1 cut(s) 842
VpaK11BI GGWCC 3 cut(s) 543, 962, 1097
XceI RCATGY 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 4 cut(s) 509, 701, 705, 1308
ZrmI AGTACT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.