AT5G18510

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002054
Physical Location & Seq
Reverse (-)
6141650 .. 6143886
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18510.1

Sequence Viewer

Length: 2109 bp
ATGGTTTGCCTTTGTGAGGAAGGTCGTTGCTTGAGAAAAACCCATTTTCTAAAACCCTTTTCTACCTCCATCGATGGCTCTGTAGCCGAGCTTCCCCGTCTTGATGATCAACAACGTCTCTCTGATTCTTCTCTGCATAATACCTCTTCTGGGTTTTGGGCTGCAGATCATCATTTCTTCCTATCATGGCTTGGAAAAATGCAAGCTTTGTATGAACCCATTTGGAAAAAAGCTGGAATTTTTGAAGCAATCAAGGCATCCACTTACAAAATCATAAAAGACACGTCCTCGATTCTCTCCATTGCCGAGAAATGGTGTTCTGAAACCAAATCTTTCATCTTTCCATGGGGTGAAGCAACAATTACGTTAGAGGATGTGATGGTGCTTCTAGGGTTCTCTGTTTTGGGTTCTCCCGTTTTTTCTCCTTTAGAATGTTCAGAGATGAGAGATTCCGCAGAGAAACTTGAAAAAGTAAGACGAGACAGTCTTGGCAAGGCTAAGCGAGTGAGCCAAAGATCATGGACTTCGAGCTTCATGGGTAGAGGTGGTCAGATGGAGCATGAAGCTTTTCTTGTATTGTGGCTTTCACTTTTTGTTTTTCCAGGTAAATTTTGTCGTTCTATATCGACAAACGTAATCCCTATAGCTGTTCGTTTAGCTAGAGGTGAAAGAATTGCTCTTGCGCCTGCTGTTCTCGCATTCCTGTACAAAGATTTGGATCGAATCTGTGATTTCTCTAGAGGAAAATGTGCTGGCAAAGTTAATTTGAAGTCTCTGTTTAAGTTAGTCCAAGTTTGGACTTGGGAGAGATTCAGTAACATAAGACCAAAAGCTAAAGAGATACCTAAAGGTGAACCTAGAATAGCTCAGTGGGATGGTCTGCAACAAATATCTAAGAATGTGAAACTGAGTTTTGATGTTTTCGAGTGGCGTCCTTACACTAAACCGTTGAAGAACTGGAACCCACTTCGGTTTTACGTTGATGAAGCTATGTGGCTGACTGTTGATGACAGTGTTGATGATGCATTTGCTTCTTTTGCTCGATGTGTGAAAGTTTCATACCTTGCTGGAAATGGTTTTGTTGAAGATTACTTCCCTTATCGAGTGGCGAGGCAGTTCGGTTTGTCTCAAGATCTTCCTGGTTTGGTTACTCGTCGTAGAAAAATCACAGAAAAGGATGCTTGGGATGATTACAGTAATTCTCTTGAGGGTTTAAATCTCTACTTGCCTTCTCAACTTGATCGAGGTTATGTCACTGCCAGGTACCAAGACTGGTGGTTTAAATCAGCTTCAGAATATTTTGGTTCTGAAGAGATACAGAAAGAATCGACTGAAGCTTTTGATGCAAGGAATACATTTGATCATCTTGATAAAGATGATGATGATGGTGATATTGATGTATCTACCAAGGTACCTCCTTTGAGTCAAGTAGTTCAGAAGTTGGAAGAAGGCTTTACTGCAAAACGCAGAATATCGAGGATGCATAGATCAGCAAAGAGATATAAGATAACTGAGTCTGATGTTCACATGAAGCGAGCTCGTGAGGCTGATGCTGAGATTTCTACGGATAAAGAAGATGACTGCATGACCGTTGCTCAATTGATCAGATCTAGGAATAAGTACTTTAGTGATGTAGACAAGAAAACTGGAGGTGATGCTTCTGAATCACTTGGAAAAAGAAGTAGAAGATATATGCTGGTGGATAGCGATGATGATTCAGGGCCTTGTCAAAAGCATGCTTTAATGAAAGTAGAGCAAAGAAGTGTAGAGGATGATGGAACTACCAAAAAAACAGAGATTACAAGGCAAACATGTGATGATGTAAATGGAAGTGATGCAGAGAAGAAGGCAATAATCAATGATGGAATCAAGGAGGCAGATTCTTGGCTACTTGAAGATAGAGAAATTGAGAGGAGATGCATTGGAAAGTTTTGCAGTGAAGTTAAAAAGGAAGAAGATGTTGATGAAAGATTGAGGCAGAGAACGCTTGCAATAGAGAAGATGGCACTGGAGCTGGAGACACGTCTTAGTAAGATGGAGAAGAGTTTGGCAGAGATTAGAAAATGGAAAACCAGAGGAAACCAGACCAAAAATGGTTTTTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

702

Amino Acids

80.55

Weight (kDa)

8.03

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 79 - 426 2.4e-118 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 483
Acc65I GGTACC 2 cut(s) 1263, 1411
AccB1I GGYRCC 2 cut(s) 1263, 1411
AccI GTMKAC 1 cut(s) 1635
AciI CCGC 1 cut(s) 453
AclWI GGATC 1 cut(s) 726
AcsI RAATTY 2 cut(s) 237, 608
AcuI CTGAAG 3 cut(s) 1275, 1329, 1353
AcyI GRCGYC 1 cut(s) 931
AfaI GTAC 4 cut(s) 707, 1265, 1413, 1622
AfiI CCNNNNNNNGG 3 cut(s) 16, 150, 312
AflIII ACRYGT 3 cut(s) 282, 1811, 2021
AgsI TTSAA 6 cut(s) 245, 467, 769, 952, 1085, 1895
AjiI CACGTC 2 cut(s) 285, 2024
AjnI CCWGG 3 cut(s) 601, 1138, 1259
Alw21I GWGCWC 1 cut(s) 1540
Alw26I GTCTC 5 cut(s) 122, 474, 777, 1131, 2012
AlwI GGATC 1 cut(s) 726
AoxI GGCC 1 cut(s) 1721
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 237, 608
Asp700I GAANNNNTTC 1 cut(s) 567
Asp718I GGTACC 2 cut(s) 1263, 1411
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 1 cut(s) 1721
AsuHPI GGTGA 5 cut(s) 362, 677, 863, 1400, 1664
BaeI ACNNNNGTAYC 2 cut(s) 1395, 1428
BanI GGYRCC 2 cut(s) 1263, 1411
BanII GRGCYC 1 cut(s) 1540
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BauI CACGAG 1 cut(s) 1539
Bbv12I GWGCWC 1 cut(s) 1540
BbvI GCAGC 1 cut(s) 148
BciT130I CCWGG 3 cut(s) 603, 1140, 1261
BclI TGATCA 3 cut(s) 106, 1360, 1602
BcoDI GTCTC 5 cut(s) 122, 474, 777, 1131, 2012
BfaI CTAG 5 cut(s) 389, 660, 738, 858, 1611
BfmI CTRYAG 3 cut(s) 81, 162, 642
BglII AGATCT 2 cut(s) 1132, 1607
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 163
BmcAI AGTACT 1 cut(s) 1622
Bme1390I CCNGG 3 cut(s) 603, 1140, 1261
BmgBI CACGTC 2 cut(s) 285, 2024
BmgT120I GGNCC 1 cut(s) 1721
BmiI GGNNCC 3 cut(s) 962, 1265, 1413
BmrFI CCNGG 3 cut(s) 603, 1140, 1261
BmsI GCATC 9 cut(s) 266, 1012, 1168, 1333, 1470, 1540, 1645, 1825, 1907
BpmI CTGGAG 3 cut(s) 1668, 2030, 2036
Bpu1102I GCTNAGC 1 cut(s) 498
BpuEI CTTGAG 3 cut(s) 52, 1113, 1226
Bsa29I ATCGAT 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 931
BsaJI CCNNGG 2 cut(s) 344, 1407
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 150, 312
Bse1I ACTGG 4 cut(s) 962, 1277, 1651, 2013
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 3 cut(s) 603, 1140, 1261
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 344, 1407
BseGI GGATG 7 cut(s) 257, 379, 880, 1183, 1192, 1485, 1777
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 3 cut(s) 16, 150, 312
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 4 cut(s) 881, 899, 1503, 1545
BseNI ACTGG 4 cut(s) 962, 1277, 1651, 2013
BseRI GAGGAG 1 cut(s) 1927
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 1723
BshNI GGYRCC 2 cut(s) 1263, 1411
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 1540
BslI CCNNNNNNNGG 3 cut(s) 16, 150, 312
BsmAI GTCTC 5 cut(s) 122, 474, 777, 1131, 2012
BsmBI CGTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 1 cut(s) 1723
Bsp1286I GDGCHC 1 cut(s) 1540
Bsp1407I TGTACA 1 cut(s) 705
Bsp1720I GCTNAGC 1 cut(s) 498
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 1 cut(s) 453
BspANI GGCC 1 cut(s) 1723
BspCNI CTCAG 4 cut(s) 880, 900, 1504, 1546
BspDI ATCGAT 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 962, 1265, 1413
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 726
BspT107I GGYRCC 2 cut(s) 1263, 1411
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 4 cut(s) 962, 1277, 1651, 2013
BssECI CCNNGG 2 cut(s) 344, 1407
BssNI GRCGYC 1 cut(s) 931
BssSI CACGAG 1 cut(s) 1539
BssT1I CCWWGG 2 cut(s) 344, 1407
Bst2BI CACGAG 1 cut(s) 1539
Bst2UI CCWGG 3 cut(s) 603, 1140, 1261
Bst4CI ACNGT 6 cut(s) 485, 948, 1003, 1013, 1196, 1591
Bst6I CTCTTC 3 cut(s) 151, 1305, 2036
BstACI GRCGYC 1 cut(s) 931
BstAUI TGTACA 1 cut(s) 705
BstC8I GCNNGC 6 cut(s) 204, 687, 754, 1536, 1737, 1989
BstDEI CTNAG 8 cut(s) 498, 867, 894, 908, 1512, 1554, 2027, 2106
BstDSI CCRYGG 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 7 cut(s) 257, 379, 880, 1183, 1192, 1485, 1777
BstHHI GCGC 1 cut(s) 685
BstMAI GTCTC 5 cut(s) 122, 474, 777, 1131, 2012
BstMWI GCNNNNNNNGC 6 cut(s) 254, 695, 1037, 1343, 1544, 1984
BstNI CCWGG 3 cut(s) 603, 1140, 1261
BstNSI RCATGY 2 cut(s) 1739, 1815
BstSCI CCNGG 3 cut(s) 601, 1138, 1259
BstSFI CTRYAG 3 cut(s) 81, 162, 642
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 1132, 1607
BstYI RGATCY 2 cut(s) 1132, 1607
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 1 cut(s) 1723
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 1722
BtrI CACGTC 2 cut(s) 285, 2024
BtsCI GGATG 7 cut(s) 257, 379, 880, 1183, 1192, 1485, 1777
BtsI GCAGTG 2 cut(s) 1254, 1942
BtsIMutI CAGTG 5 cut(s) 875, 1018, 1254, 1942, 2006
Cac8I GCNNGC 6 cut(s) 204, 687, 754, 1536, 1737, 1989
CfoI GCGC 1 cut(s) 685
Cfr13I GGNCC 1 cut(s) 1721
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 1 cut(s) 920
Csp6I GTAC 4 cut(s) 706, 1264, 1412, 1621
CspCI CAANNNNNGTGG 2 cut(s) 1256, 1291
CviAII CATG 9 cut(s) 186, 345, 519, 535, 560, 1528, 1585, 1736, 1812
CviQI GTAC 4 cut(s) 706, 1264, 1412, 1621
DdeI CTNAG 8 cut(s) 498, 867, 894, 908, 1512, 1554, 2027, 2106
DraI TTTAAA 2 cut(s) 1215, 1282
DrdI GACNNNNNNGTC 1 cut(s) 483
DseDI GACNNNNNNGTC 1 cut(s) 483
Eam1104I CTCTTC 3 cut(s) 151, 1305, 2036
EarI CTCTTC 3 cut(s) 151, 1305, 2036
Ecl136II GAGCTC 1 cut(s) 1538
Eco130I CCWWGG 2 cut(s) 344, 1407
Eco24I GRGCYC 1 cut(s) 1540
Eco53kI GAGCTC 1 cut(s) 1538
Eco57I CTGAAG 3 cut(s) 1275, 1329, 1353
EcoICRI GAGCTC 1 cut(s) 1538
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 1721
EcoRII CCWGG 3 cut(s) 601, 1138, 1259
EcoT14I CCWWGG 2 cut(s) 344, 1407
EcoT22I ATGCAT 3 cut(s) 1027, 1485, 1922
EcoT38I GRGCYC 1 cut(s) 1540
ErhI CCWWGG 2 cut(s) 344, 1407
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 9 cut(s) 189, 348, 522, 538, 563, 1531, 1588, 1739, 1815
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 9 cut(s) 185, 344, 518, 534, 559, 1527, 1584, 1735, 1811
FbaI TGATCA 3 cut(s) 106, 1360, 1602
FblI GTMKAC 1 cut(s) 1635
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 7 cut(s) 244, 386, 887, 1190, 1199, 1492, 1784
FriOI GRGCYC 1 cut(s) 1540
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 5 cut(s) 389, 660, 738, 858, 1611
GlaI GCGC 1 cut(s) 684
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 3 cut(s) 1668, 2030, 2036
HaeIII GGCC 1 cut(s) 1723
HgaI GACGC 1 cut(s) 920
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 931
Hin1II CATG 9 cut(s) 189, 348, 522, 538, 563, 1531, 1588, 1739, 1815
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HindIII AAGCTT 3 cut(s) 204, 564, 1335
HphI GGTGA 5 cut(s) 362, 677, 863, 1400, 1664
Hpy166II GTNNAC 3 cut(s) 854, 1525, 1636
Hpy188III TCNNGA 6 cut(s) 101, 738, 1130, 1205, 1367, 1541
Hpy8I GTNNAC 3 cut(s) 854, 1525, 1636
Hpy99I CGWCG 1 cut(s) 1158
HpyAV CCTTC 4 cut(s) 14, 1239, 1442, 1840
HpyCH4III ACNGT 6 cut(s) 485, 948, 1003, 1013, 1196, 1591
HpyCH4IV ACGT 6 cut(s) 115, 284, 365, 633, 978, 2023
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 695, 1037, 1343, 1544, 1984
HpyF3I CTNAG 8 cut(s) 498, 867, 894, 908, 1512, 1554, 2027, 2106
HpySE526I ACGT 6 cut(s) 115, 284, 365, 633, 978, 2023
Hsp92I GRCGYC 1 cut(s) 931
Hsp92II CATG 9 cut(s) 189, 348, 522, 538, 563, 1531, 1588, 1739, 1815
HspAI GCGC 1 cut(s) 683
KpnI GGTACC 2 cut(s) 1267, 1415
Ksp22I TGATCA 3 cut(s) 106, 1360, 1602
LmnI GCTCC 2 cut(s) 556, 2011
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 9 cut(s) 266, 1012, 1168, 1333, 1470, 1540, 1645, 1825, 1907
MaeI CTAG 5 cut(s) 389, 660, 738, 858, 1611
MaeII ACGT 6 cut(s) 115, 284, 365, 633, 978, 2023
MaeIII GTNAC 3 cut(s) 815, 1147, 1252
MfeI CAATTG 1 cut(s) 1598
MflI RGATCY 2 cut(s) 1132, 1607
MhlI GDGCHC 1 cut(s) 1540
MluCI AATT 8 cut(s) 237, 360, 608, 672, 763, 1198, 1598, 1905
MlyI GAGTC 2 cut(s) 1432, 1523
MmeI TCCRAC 1 cut(s) 1422
Mph1103I ATGCAT 3 cut(s) 1027, 1485, 1922
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 6 cut(s) 762, 780, 1214, 1281, 1742, 1944
MspR9I CCNGG 3 cut(s) 603, 1140, 1261
MunI CAATTG 1 cut(s) 1598
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 3 cut(s) 603, 1140, 1261
MwoI GCNNNNNNNGC 6 cut(s) 254, 695, 1037, 1343, 1544, 1984
NcoI CCATGG 1 cut(s) 344
NlaIII CATG 9 cut(s) 189, 348, 522, 538, 563, 1531, 1588, 1739, 1815
NlaIV GGNNCC 3 cut(s) 962, 1265, 1413
NmeAIII GCCGAG 2 cut(s) 112, 331
NmuCI GTSAC 1 cut(s) 1252
NsiI ATGCAT 3 cut(s) 1027, 1485, 1922
NspI RCATGY 2 cut(s) 1739, 1815
PaeI GCATGC 1 cut(s) 1739
PciI ACATGT 1 cut(s) 1811
PctI GAATGC 1 cut(s) 698
PdmI GAANNNNTTC 1 cut(s) 567
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 2 cut(s) 1431, 1522
PpsI GAGTC 2 cut(s) 1431, 1522
PscI ACATGT 1 cut(s) 1811
Psp124BI GAGCTC 1 cut(s) 1540
Psp6I CCWGG 3 cut(s) 601, 1138, 1259
PspGI CCWGG 3 cut(s) 601, 1138, 1259
PspN4I GGNNCC 3 cut(s) 962, 1265, 1413
PspPI GGNCC 1 cut(s) 1721
PstI CTGCAG 1 cut(s) 166
PsuI RGATCY 2 cut(s) 1132, 1607
RsaI GTAC 4 cut(s) 707, 1265, 1413, 1622
RsaNI GTAC 4 cut(s) 706, 1264, 1412, 1621
SacI GAGCTC 1 cut(s) 1540
SaqAI TTAA 6 cut(s) 762, 780, 1214, 1281, 1742, 1944
SatI GCNGC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 1721
ScaI AGTACT 1 cut(s) 1622
SchI GAGTC 2 cut(s) 1432, 1523
ScrFI CCNGG 3 cut(s) 603, 1140, 1261
SduI GDGCHC 1 cut(s) 1540
SfaNI GCATC 9 cut(s) 266, 1012, 1168, 1333, 1470, 1540, 1645, 1825, 1907
SfcI CTRYAG 3 cut(s) 81, 162, 642
SmlI CTYRAG 3 cut(s) 31, 1128, 1205
SmoI CTYRAG 3 cut(s) 31, 1128, 1205
SphI GCATGC 1 cut(s) 1739
Sse9I AATT 8 cut(s) 237, 360, 608, 672, 763, 1198, 1598, 1905
SsiI CCGC 1 cut(s) 453
SspI AATATT 1 cut(s) 1298
SspMI CTAG 5 cut(s) 389, 660, 738, 858, 1611
SstI GAGCTC 1 cut(s) 1540
StyD4I CCNGG 3 cut(s) 601, 1138, 1259
StyI CCWWGG 2 cut(s) 344, 1407
TaaI ACNGT 6 cut(s) 485, 948, 1003, 1013, 1196, 1591
TaiI ACGT 6 cut(s) 118, 287, 368, 636, 981, 2026
TasI AATT 8 cut(s) 237, 360, 608, 672, 763, 1198, 1598, 1905
TatI WGTACW 2 cut(s) 705, 1620
Tru1I TTAA 6 cut(s) 762, 780, 1214, 1281, 1742, 1944
Tru9I TTAA 6 cut(s) 762, 780, 1214, 1281, 1742, 1944
TscAI CASTG 5 cut(s) 875, 1018, 1261, 1942, 2013
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 9 cut(s) 228, 325, 523, 576, 999, 1047, 1544, 1760, 1980
TspGWI ACGGA 1 cut(s) 1580
TspRI CASTG 5 cut(s) 875, 1018, 1261, 1942, 2013
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 2 cut(s) 237, 608
XbaI TCTAGA 1 cut(s) 737
XceI RCATGY 2 cut(s) 1739, 1815
XcmI CCANNNNNNNNNTGG 1 cut(s) 2090
XmiI GTMKAC 1 cut(s) 1635
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 5 cut(s) 389, 660, 738, 858, 1611
ZrmI AGTACT 1 cut(s) 1622
Zsp2I ATGCAT 3 cut(s) 1027, 1485, 1922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.