RLG00000033858

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002054
Physical Location & Seq
Reverse (-)
33266010 .. 33266730
721 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033858

Sequence Viewer

Length: 492 bp
ATGGCCGTCCATGGTTGTGTTCCCGGGTTGCAAGAAGCCCCAGAAAAAATGGGTGGAGTGACGAGGCCCATTAATGGGGTGTTGATGGAAACAGTGGAGGAGATGGAGAAGAAGAAGACGGAGCTGACGAGAACTCCGGCGAAGAAAGCTTATCACTTTAACTGGATGACCCATTTTATGAAGCTTCAGGACTACAAGCATGAACATGGGGCATTCCTGTCTCTGTGGTTGGCAAGGTTTGTATTTCCTTCTCTTCCTGAAGAAAGCTTAGGGAAACATGTGTTTCCATTTGCGGTTCTTTTGTCACAGGGCACTAGAGTTGCTCTGGCTCCTGCAGTTCTTGCAGGGCTTTTCAGAGATTTAAGCTTTTGGAAAAACCAAGCCTTTAAGGGTGAGGAGATAATCTCTGTTTCGAGCCCATTTCAGCTGTTGCAGTTGTGGGCGTTGGAGAGGTTTCAGGGTGTGCTTAATGATGGGCCAGTCCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

164

Amino Acids

18.36

Weight (kDa)

7.91

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 28 - 154 4.6e-29 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 170, 279
AfiI CCNNNNNNNGG 2 cut(s) 74, 75
AflIII ACRYGT 1 cut(s) 277
AluBI AGCT 6 cut(s) 124, 149, 184, 267, 366, 427
AluI AGCT 6 cut(s) 124, 149, 184, 267, 366, 427
Alw26I GTCTC 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 3 cut(s) 3, 65, 476
AseI ATTAAT 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 66, 476
AsuC2I CCSGG 2 cut(s) 24, 25
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 122
BccI CCATC 3 cut(s) 79, 97, 467
BcnI CCSGG 2 cut(s) 24, 25
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 24, 25
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 66, 476
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 2 cut(s) 24, 25
BpiI GAAGAC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 389, 421
Bpu10I CCTNAGC 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 24, 25
BsaJI CCNNGG 2 cut(s) 10, 23
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 75
Bse1I ACTGG 2 cut(s) 167, 479
BseDI CCNNGG 2 cut(s) 10, 23
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 74, 75
BseNI ACTGG 2 cut(s) 167, 479
BseRI GAGGAG 2 cut(s) 113, 410
BseSI GKGCMC 1 cut(s) 314
BshFI GGCC 3 cut(s) 5, 67, 478
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 24, 137
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 74, 75
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 5, 67, 478
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 314, 419
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 1 cut(s) 293
BspANI GGCC 3 cut(s) 5, 67, 478
BspLI GGNNCC 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 337
BsrI ACTGG 2 cut(s) 167, 479
BssECI CCNNGG 2 cut(s) 10, 23
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 341
BstDEI CTNAG 1 cut(s) 268
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 146, 341
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 22, 23
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 314
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 3 cut(s) 5, 67, 478
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 66, 476
Cfr9I CCCGGG 1 cut(s) 23
CviAII CATG 4 cut(s) 11, 200, 206, 278
DdeI CTNAG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 419
Eco57I CTGAAG 2 cut(s) 170, 279
Eco88I CYCGRG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 4 cut(s) 14, 203, 209, 281
FaiI YATR 5 cut(s) 12, 179, 201, 207, 279
FaqI GGGAC 1 cut(s) 467
FatI CATG 4 cut(s) 10, 199, 205, 277
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 419
FspBI CTAG 1 cut(s) 315
HaeIII GGCC 3 cut(s) 5, 67, 478
HapII CCGG 2 cut(s) 24, 137
Hin1II CATG 4 cut(s) 14, 203, 209, 281
HindIII AAGCTT 4 cut(s) 147, 182, 265, 364
HpaII CCGG 2 cut(s) 24, 137
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 2 cut(s) 188, 257
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 31, 335, 344, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 341
HpyF3I CTNAG 1 cut(s) 268
Hsp92II CATG 4 cut(s) 14, 203, 209, 281
LmnI GCTCC 2 cut(s) 121, 334
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 58, 303
MboII GAAGA 6 cut(s) 121, 124, 127, 154, 245, 272
MhlI GDGCHC 2 cut(s) 314, 419
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 57, 91, 388, 444
MseI TTAA 6 cut(s) 72, 159, 362, 387, 468, 490
MslI CAYNNNNRTG 2 cut(s) 15, 204
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 2 cut(s) 24, 137
MspR9I CCNGG 2 cut(s) 24, 25
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 146, 341
NciI CCSGG 2 cut(s) 24, 25
NcoI CCATGG 1 cut(s) 10
NlaIII CATG 4 cut(s) 14, 203, 209, 281
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 2 cut(s) 58, 303
NspI RCATGY 1 cut(s) 281
PciI ACATGT 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 212
PscI ACATGT 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 66, 476
PstI CTGCAG 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 427
RseI CAYNNNNRTG 2 cut(s) 15, 204
SaqAI TTAA 6 cut(s) 72, 159, 362, 387, 468, 490
Sau96I GGNCC 2 cut(s) 66, 476
ScrFI CCNGG 2 cut(s) 24, 25
SduI GDGCHC 2 cut(s) 314, 419
SetI ASST 8 cut(s) 126, 151, 186, 239, 269, 368, 429, 455
SfcI CTRYAG 1 cut(s) 333
SmaI CCCGGG 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 15, 204
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 22, 23
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 413
Tru1I TTAA 6 cut(s) 72, 159, 362, 387, 468, 490
Tru9I TTAA 6 cut(s) 72, 159, 362, 387, 468, 490
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 2 cut(s) 58, 303
Tsp45I GTSAC 2 cut(s) 58, 303
TspDTI ATGAA 2 cut(s) 194, 216
TspGWI ACGGA 1 cut(s) 134
TspMI CCCGGG 1 cut(s) 23
TspRI CASTG 1 cut(s) 99
VspI ATTAAT 1 cut(s) 72
XceI RCATGY 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 23
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.