AT1G50820

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002054
Physical Location & Seq
Reverse (-)
18827706 .. 18834861
7156 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50820.1

Sequence Viewer

Length: 1587 bp
ATGGCGTCTCGTACCGAGAACAGTAGTAGCAAAAGAACCCATCTTTCAAAACCTTGTCTCTCCTCCTCCATTGATGGATTTGAAGATTGTCAGAATCGTTCTTCAGCTCTTTCTGTTCACTTAAAGGCTCTTTCTACGAGTATTAAATTCTGGGGTTGGAGGTTTCCAAACAAAAAGTTCAAGTCTTGGGCTAGAAAAATGGCATCTTTGCACGAACCCATTTGGAGAAAAGCTGGGATTTTTGAAGCTGTTATAGCTTCAACATACAAAATCCCTAAAGACACAGATCTTGTTCTGGGTTTAGCTGAGAAATGGTGTCCAGACACTAAAACCTTCATTTTCCCTTGGGGTGAAGCAACTATAACCCTTGAAGACGTTATGGTGCTTTTGGGTTTCTCTGTTTTGGGTTTGCCTGTTTTTGCCACCGTGGATAGCTCAGGGAAGGAGATTATGGCGAAGCTAGAGAAAGAATGGAAGAAGATTAAGAACGATAAAGTCTGTCTGGTAACCAAATTAGCATGGATGGAGAGATTCATGAACAGTGGTGATGAGCTTGAGCATGTTGGGTTCCTTGTGTTGTGGCTTAGCTACTTTGCCTTTCCATCACACTTATTTCATATCTCTGAAGCTATTTTGCCAGTCGCTGTTCATCTTTCAAGTGGAACTAAGATGGCTCTTGCTCCTGCTGTTCTTGCACACTTGTATGCAGACCTAAGTCTCTTGCAAGGCCACATTAGAGTTTTCAGTGAATCGCTTATTAAGGTACAGCTTGATCTTAATGCTTTGTTTAAGCTGGTTCAAGTTTGGGCATGGGAGAGATTCAGGGAACTACAACTAAAACCTTTTTCGTTGCTAAGGGGTGAGCCAAGATTGGCTCGGTGGTGTGACATGAAACAGAGTACCAGCAATGCTTGGAGGATTTTCAACAACTCCAAAATGGATAGTTTTGAGTGGCGCCCCTACACTAAAACTGTGAAAAACTGGGATTTTCCTCGATTTTATCCTGAGAGAGCAATGCGGGTGCCTGTTGGTCCCAACCTTGATGATGAATTTATCTCCTTTGCTCGATGCATCAAGGTGTCTGAGCTTGTTGGTATTGACAGTGTGGAGCATTACTTTCCCAATCGAGTGGCTTCACAGTTTGGGATGCGTCAAGATGTTCATTGTCCTGTTAACCAGAAAAAACTCTCACGTGATGCAGCTTGGAATGATTACGACAAGCCTATTGATGGTTTGACAATATACATTCCTTCCCGTTCTGCAATATCTTGTGTTACGCCTATGTGCGAGCCGCAGAGGAAGGGTTTTGTTGAATCAGATGAAACATTGAAATCAAGAACCATCATAGGTGATGACACTAGTTTTGTAACTTCAGGCTCTAAGATGAACAGAACAAGCGAGGATGAAATGAAGATAGCTGAGAATTCAACAAACAAGAGACGAAAGTACATGAAGCAAGCTCATAGGGGTACAATGGGTCTTTGTCAGAAACAGGTTCCATCAGACAATGATGAAGACGATGATAGCCTCACCGTTTCTCAAGTAACGGTGCGTTATAAGAAGAAGTATAGTGATATTAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

528

Amino Acids

60.47

Weight (kDa)

9.08

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 79 - 427 1.6e-119 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1557
AccB1I GGYRCC 2 cut(s) 954, 1021
AciI CCGC 2 cut(s) 1018, 1292
AcsI RAATTY 3 cut(s) 146, 1049, 1423
AcuI CTGAAG 3 cut(s) 87, 645, 1356
AcvI CACGTG 1 cut(s) 1193
AcyI GRCGYC 2 cut(s) 5, 955
AfaI GTAC 5 cut(s) 13, 765, 901, 1448, 1471
AfiI CCNNNNNNNGG 1 cut(s) 1229
AhlI ACTAGT 1 cut(s) 1358
Alw26I GTCTC 4 cut(s) 12, 62, 722, 1432
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 1 cut(s) 727
ApeKI GCWGC 1 cut(s) 1199
ApoI RAATTY 3 cut(s) 146, 1049, 1423
ArsI GACNNNNNNTTYG 2 cut(s) 1346, 1378
AspLEI GCGC 1 cut(s) 957
AspS9I GGNCC 1 cut(s) 1031
AsuHPI GGTGA 5 cut(s) 362, 557, 872, 1361, 1522
AvaII GGWCC 1 cut(s) 1031
BanI GGYRCC 2 cut(s) 954, 1021
BbrPI CACGTG 1 cut(s) 1193
BbsI GAAGAC 2 cut(s) 378, 1521
BbvI GCAGC 1 cut(s) 1211
BccI CCATC 8 cut(s) 48, 68, 517, 610, 664, 1223, 1349, 1507
BcoDI GTCTC 4 cut(s) 12, 62, 722, 1432
BcuI ACTAGT 1 cut(s) 1358
BfaI CTAG 3 cut(s) 192, 461, 1359
BfoI RGCGCY 1 cut(s) 958
BglII AGATCT 1 cut(s) 286
BisI GCNGC 2 cut(s) 1200, 1292
BlpI GCTNAGC 1 cut(s) 584
BlsI GCNGC 2 cut(s) 1201, 1293
Bme18I GGWCC 1 cut(s) 1031
BmgT120I GGNCC 1 cut(s) 1031
BmiI GGNNCC 5 cut(s) 569, 956, 1023, 1033, 1497
BmrI ACTGGG 1 cut(s) 991
BmsI GCATC 5 cut(s) 212, 1058, 1080, 1137, 1186
BmuI ACTGGG 1 cut(s) 991
BoxI GACNNNNGTC 1 cut(s) 714
BpiI GAAGAC 2 cut(s) 378, 1521
Bpu10I CCTNAGC 2 cut(s) 436, 854
Bpu1102I GCTNAGC 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 575, 1524
BsaAI YACGTR 1 cut(s) 1193
BsaHI GRCGYC 2 cut(s) 5, 955
BsaJI CCNNGG 2 cut(s) 344, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 1229
Bse1I ACTGG 2 cut(s) 638, 986
Bse3DI GCAATG 2 cut(s) 913, 1020
BseDI CCNNGG 2 cut(s) 344, 426
BseGI GGATG 3 cut(s) 528, 1152, 1408
BseLI CCNNNNNNNGG 1 cut(s) 1229
BseMI GCAATG 2 cut(s) 913, 1020
BseMII CTCAG 5 cut(s) 297, 450, 996, 1074, 1410
BseNI ACTGG 2 cut(s) 638, 986
BseRI GAGGAG 2 cut(s) 52, 55
BseXI GCAGC 1 cut(s) 1211
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 729
BshNI GGYRCC 2 cut(s) 954, 1021
BslFI GGGAC 1 cut(s) 1017
BslI CCNNNNNNNGG 1 cut(s) 1229
BsmAI GTCTC 4 cut(s) 12, 62, 722, 1432
BsmBI CGTCTC 2 cut(s) 12, 1432
BsmFI GGGAC 1 cut(s) 1017
BsnI GGCC 1 cut(s) 729
Bsp143I GATC 2 cut(s) 286, 772
Bsp1720I GCTNAGC 1 cut(s) 584
BspACI CCGC 2 cut(s) 1018, 1292
BspANI GGCC 1 cut(s) 729
BspCNI CTCAG 5 cut(s) 298, 449, 997, 1075, 1411
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 5 cut(s) 569, 956, 1023, 1033, 1497
BspT107I GGYRCC 2 cut(s) 954, 1021
BsrDI GCAATG 2 cut(s) 913, 1020
BsrI ACTGG 2 cut(s) 638, 986
BssECI CCNNGG 2 cut(s) 344, 426
BssMI GATC 2 cut(s) 286, 772
BssNI GRCGYC 2 cut(s) 5, 955
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 8 cut(s) 23, 427, 542, 973, 1103, 1140, 1534, 1549
BstACI GRCGYC 2 cut(s) 5, 955
BstBAI YACGTR 1 cut(s) 1193
BstC8I GCNNGC 2 cut(s) 1289, 1458
BstDSI CCRYGG 1 cut(s) 426
BstEII GGTNACC 1 cut(s) 505
BstF5I GGATG 3 cut(s) 528, 1152, 1408
BstH2I RGCGCY 1 cut(s) 958
BstHHI GCGC 1 cut(s) 957
BstKTI GATC 2 cut(s) 289, 775
BstMAI GTCTC 4 cut(s) 12, 62, 722, 1432
BstMBI GATC 2 cut(s) 286, 772
BstMWI GCNNNNNNNGC 2 cut(s) 254, 692
BstNSI RCATGY 1 cut(s) 563
BstPAI GACNNNNGTC 1 cut(s) 714
BstPI GGTNACC 1 cut(s) 505
BstV1I GCAGC 1 cut(s) 1211
BstV2I GAAGAC 2 cut(s) 378, 1521
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 1129
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 1 cut(s) 729
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 3 cut(s) 528, 1152, 1408
BtsIMutI CAGTG 3 cut(s) 547, 751, 1108
Cac8I GCNNGC 2 cut(s) 1289, 1458
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 1 cut(s) 534
CfoI GCGC 1 cut(s) 957
Cfr13I GGNCC 1 cut(s) 1031
CseI GACGC 1 cut(s) 1139
Csp6I GTAC 5 cut(s) 12, 764, 900, 1447, 1470
CviAII CATG 6 cut(s) 519, 535, 560, 810, 889, 1450
CviQI GTAC 5 cut(s) 12, 764, 900, 1447, 1470
DinI GGCGCC 1 cut(s) 956
DpnI GATC 2 cut(s) 288, 774
DpnII GATC 2 cut(s) 286, 772
Eco130I CCWWGG 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 1031
Eco57I CTGAAG 3 cut(s) 87, 645, 1356
Eco72I CACGTG 1 cut(s) 1193
Eco91I GGTNACC 1 cut(s) 505
EcoO65I GGTNACC 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 1423
EcoT14I CCWWGG 1 cut(s) 344
EcoT22I ATGCAT 1 cut(s) 1073
EgeI GGCGCC 1 cut(s) 956
EheI GGCGCC 1 cut(s) 956
ErhI CCWWGG 1 cut(s) 344
Esp3I CGTCTC 2 cut(s) 12, 1432
FaeI CATG 6 cut(s) 522, 538, 563, 813, 892, 1453
FaqI GGGAC 1 cut(s) 1017
FatI CATG 6 cut(s) 518, 534, 559, 809, 888, 1449
FauI CCCGC 1 cut(s) 1011
Fnu4HI GCNGC 2 cut(s) 1200, 1292
FokI GGATG 3 cut(s) 535, 1159, 1415
Fsp4HI GCNGC 2 cut(s) 1200, 1292
FspBI CTAG 3 cut(s) 192, 461, 1359
GlaI GCGC 1 cut(s) 956
GluI GCNGC 2 cut(s) 1200, 1292
GsaI CCCAGC 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 958
HaeIII GGCC 1 cut(s) 729
HgaI GACGC 1 cut(s) 1139
HhaI GCGC 1 cut(s) 957
Hin1I GRCGYC 2 cut(s) 5, 955
Hin1II CATG 6 cut(s) 522, 538, 563, 813, 892, 1453
Hin6I GCGC 1 cut(s) 955
HinP1I GCGC 1 cut(s) 955
HincII GTYRAC 1 cut(s) 1174
HindII GTYRAC 1 cut(s) 1174
HinfI GANTC 5 cut(s) 94, 531, 749, 819, 1313
HpaI GTTAAC 1 cut(s) 1174
HphI GGTGA 5 cut(s) 362, 557, 872, 1361, 1522
Hpy166II GTNNAC 2 cut(s) 118, 1174
Hpy188I TCNGA 6 cut(s) 93, 625, 1084, 1318, 1488, 1504
Hpy188III TCNNGA 5 cut(s) 320, 535, 1004, 1154, 1335
Hpy8I GTNNAC 2 cut(s) 118, 1174
HpyAV CCTTC 4 cut(s) 343, 436, 1260, 1294
HpyCH4III ACNGT 8 cut(s) 23, 427, 542, 973, 1103, 1140, 1534, 1549
HpyCH4IV ACGT 2 cut(s) 375, 1192
HpyCH4V TGCA 7 cut(s) 211, 695, 707, 724, 1071, 1199, 1262
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 692
HpySE526I ACGT 2 cut(s) 375, 1192
Hsp92I GRCGYC 2 cut(s) 5, 955
Hsp92II CATG 6 cut(s) 522, 538, 563, 813, 892, 1453
HspAI GCGC 1 cut(s) 955
KasI GGCGCC 1 cut(s) 954
KspAI GTTAAC 1 cut(s) 1174
Kzo9I GATC 2 cut(s) 286, 772
LmnI GCTCC 2 cut(s) 685, 1108
Lsp1109I GCAGC 1 cut(s) 1211
LweI GCATC 5 cut(s) 212, 1058, 1080, 1137, 1186
MaeI CTAG 3 cut(s) 192, 461, 1359
MaeII ACGT 2 cut(s) 375, 1192
MaeIII GTNAC 5 cut(s) 505, 884, 1273, 1366, 1543
MalI GATC 2 cut(s) 288, 774
MboI GATC 2 cut(s) 286, 772
MboII GAAGA 8 cut(s) 93, 95, 383, 487, 490, 1423, 1526, 1573
MflI RGATCY 1 cut(s) 286
MluCI AATT 4 cut(s) 146, 512, 1049, 1423
Mly113I GGCGCC 1 cut(s) 955
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 8 cut(s) 73, 76, 153, 909, 1002, 1290, 1393, 1538
Mph1103I ATGCAT 1 cut(s) 1073
MseI TTAA 9 cut(s) 122, 144, 483, 759, 777, 789, 1173, 1578, 1585
MslI CAYNNNNRTG 2 cut(s) 702, 1076
MwoI GCNNNNNNNGC 2 cut(s) 254, 692
NarI GGCGCC 1 cut(s) 955
NdeII GATC 2 cut(s) 286, 772
NlaIII CATG 6 cut(s) 522, 538, 563, 813, 892, 1453
NlaIV GGNNCC 5 cut(s) 569, 956, 1023, 1033, 1497
NmuCI GTSAC 1 cut(s) 884
NsiI ATGCAT 1 cut(s) 1073
NspI RCATGY 1 cut(s) 563
PagI TCATGA 1 cut(s) 534
PfeI GAWTC 5 cut(s) 94, 531, 749, 819, 1313
PkrI GCNGC 2 cut(s) 1201, 1293
PluTI GGCGCC 1 cut(s) 958
PmaCI CACGTG 1 cut(s) 1193
PmlI CACGTG 1 cut(s) 1193
Ppu21I YACGTR 1 cut(s) 1193
PshAI GACNNNNGTC 1 cut(s) 714
PsiI TTATAA 1 cut(s) 1557
PspCI CACGTG 1 cut(s) 1193
PspEI GGTNACC 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 233
PspN4I GGNNCC 5 cut(s) 569, 956, 1023, 1033, 1497
PspPI GGNCC 1 cut(s) 1031
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 5 cut(s) 13, 765, 901, 1448, 1471
RsaNI GTAC 5 cut(s) 12, 764, 900, 1447, 1470
RseI CAYNNNNRTG 2 cut(s) 702, 1076
SaqAI TTAA 9 cut(s) 122, 144, 483, 759, 777, 789, 1173, 1578, 1585
SatI GCNGC 2 cut(s) 1200, 1292
Sau3AI GATC 2 cut(s) 286, 772
Sau96I GGNCC 1 cut(s) 1031
SfaNI GCATC 5 cut(s) 212, 1058, 1080, 1137, 1186
SfoI GGCGCC 1 cut(s) 956
SinI GGWCC 1 cut(s) 1031
SmiMI CAYNNNNRTG 2 cut(s) 702, 1076
SmlI CTYRAG 2 cut(s) 554, 1539
SmoI CTYRAG 2 cut(s) 554, 1539
SpeI ACTAGT 1 cut(s) 1358
Sse9I AATT 4 cut(s) 146, 512, 1049, 1423
SsiI CCGC 2 cut(s) 1018, 1292
SspDI GGCGCC 1 cut(s) 954
SspMI CTAG 3 cut(s) 192, 461, 1359
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 8 cut(s) 23, 427, 542, 973, 1103, 1140, 1534, 1549
TaiI ACGT 2 cut(s) 378, 1195
TaqI TCGA 3 cut(s) 994, 1066, 1126
TasI AATT 4 cut(s) 146, 512, 1049, 1423
TatI WGTACW 1 cut(s) 1446
TauI GCSGC 1 cut(s) 1294
TfiI GAWTC 5 cut(s) 94, 531, 749, 819, 1313
Tru1I TTAA 9 cut(s) 122, 144, 483, 759, 777, 789, 1173, 1578, 1585
Tru9I TTAA 9 cut(s) 122, 144, 483, 759, 777, 789, 1173, 1578, 1585
TscAI CASTG 3 cut(s) 547, 751, 1108
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 1 cut(s) 1199
Tsp45I GTSAC 1 cut(s) 884
TspRI CASTG 3 cut(s) 547, 751, 1108
VpaK11BI GGWCC 1 cut(s) 1031
XapI RAATTY 3 cut(s) 146, 1049, 1423
XceI RCATGY 1 cut(s) 563
XspI CTAG 3 cut(s) 192, 461, 1359
Zsp2I ATGCAT 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.