Rw0G013280

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00595
OG0002054
Physical Location & Seq
Forward (+)
10676 .. 11986
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013280.1

Sequence Viewer

Length: 1311 bp
ATGGCGAAGAGAGAAGAAACGTCACATTCTCATCGCATATACGAGGAACGAGAAGAGAAACTTGTATCTTCAAAAGACGGGAAGCAGTTCAGAAGAGTCGCAAGGTTTCTCAAACCCTGTGCTCCGAATTCGAGCAAAGCAGTGGGACCCTCAAATACTCCATTGTTGTCTGACGTCTTTCCTCAAAGTCTTCAACAATGGCCGTCCACGGTTGTGTTCCCGGGTTGCAAGAAGCCCCAGAAAAAATGGGTGGAGTGGATTGATAGGCTGGCCGGAAAGTACTGTACTATTTGGAACCAAGCTGGGATTTGCGATGCTATTATGAGCTCGAAGTATGAGACTAACTTTAACAAGGATTTGGTGCTGGTTTTGGCCGAGTTTTGGTGCTCGGAGACTAATACATTCGTGTTTGATTGGGGCGAAGCGACGATCACAATGGAGGATGTGATGATTCTTGGTGGGTTTTCGGTTCTGGGTAAGCAGGTGACGAGGCCCATTAATGGGGTGTTGGTGGAAACAGTGGAGGAGATGGAGAAGAAGAAGACGGAGCTGACGAGAACTCCGGCTAAGAAAGCTTATCACTTTAACTGGATGACCCATTTTATGAAGCTTCAGGACTACAAGCATGAACATGTGGCATTCCTGTCTCTGTGGTTGGCAAGGTTTGTATTTCCTTCTCTTCCTGAAGAAAGCTTAGGCAAACATGTGTTTCCCATTGCGGTTCTTTTGTCACAGGGAACTAGAGTTGCTCTGGCTCCTGCAGTTCTTGCAGGGCTTTTCAGAGATTTAAGCTTTTTGAAAAACCAAGCCTTTAAGGGTGAGGAGATAATCTCTGTTTCGAGCCCATTTCAGCTGTTGCAGTTGTGGGCGTTGGAGAGGTTTCAGGGTGTGCTTAATAGTCCACCAAAGAGACTTAACCCCTGTGAGCCTAGGGCGGCTCGGTGGAACAAAGTGAACATTAAGATTAGTCTCCCTGATGTGAGGAGAGAGATTAATTTGGCTAAGAATTTTTGGTGGCGGCCTTATGCTGCTGAACTGACCAATTGGCGACATGGTTCTTACTACCTAGCTGATAAACTGTGCTTTTATGATAAAACTACGGACCAGAATTTGCAGTCTTATGTTGAATGCTTGTGTTGTGCTGAGTTGGTTGGAGTAGAAGATTGTAAGGAGAAGTATTTGCCGCACAGGGTGGCAATGCAGTTTGGAATTGATCAAGACCTTCCTGGGGATCCTACTGCATGCTCAGGGTTGGATGGTAACTCAGACACTACCGATGTTCGTTTTCTTTCTTCCAGGATCGTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

436

Amino Acids

49.92

Weight (kDa)

8.48

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 102 - 411 6.1e-85 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
AatII GACGTC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 472
AciI CCGC 4 cut(s) 719, 935, 1018, 1184
AclWI GGATC 3 cut(s) 1226, 1239, 1307
AcoI YGGCCR 3 cut(s) 200, 270, 372
AcsI RAATTY 3 cut(s) 127, 1006, 1108
AcuI CTGAAG 2 cut(s) 596, 705
AcyI GRCGYC 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 1192
AfaI GTAC 2 cut(s) 281, 286
AfiI CCNNNNNNNGG 4 cut(s) 381, 500, 501, 1228
AflIII ACRYGT 2 cut(s) 631, 703
AgsI TTSAA 4 cut(s) 72, 194, 799, 1127
AjnI CCWGG 2 cut(s) 1225, 1295
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 9 cut(s) 302, 327, 550, 575, 610, 693, 792, 853, 1070
AluI AGCT 9 cut(s) 302, 327, 550, 575, 610, 693, 792, 853, 1070
Alw21I GWGCWC 3 cut(s) 124, 329, 389
Alw26I GTCTC 5 cut(s) 332, 386, 651, 904, 974
AlwI GGATC 3 cut(s) 1226, 1239, 1307
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 5 cut(s) 200, 270, 372, 491, 1019
ApeKI GCWGC 1 cut(s) 1028
ApoI RAATTY 3 cut(s) 127, 1006, 1108
AseI ATTAAT 2 cut(s) 498, 993
Asp700I GAANNNNTTC 1 cut(s) 86
AspA2I CCTAGG 1 cut(s) 929
AspS9I GGNCC 3 cut(s) 146, 492, 1102
AsuC2I CCSGG 2 cut(s) 221, 222
AsuHPI GGTGA 2 cut(s) 496, 830
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 2 cut(s) 146, 1102
AvrII CCTAGG 1 cut(s) 929
BamHI GGATCC 1 cut(s) 1231
BanII GRGCYC 2 cut(s) 329, 845
BbsI GAAGAC 2 cut(s) 182, 548
Bbv12I GWGCWC 3 cut(s) 124, 329, 389
BbvI GCAGC 1 cut(s) 1015
BccI CCATC 2 cut(s) 523, 1250
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 1227, 1297
BclI TGATCA 1 cut(s) 1213
BcnI CCSGG 2 cut(s) 221, 222
BcoDI GTCTC 5 cut(s) 332, 386, 651, 904, 974
BfaI CTAG 3 cut(s) 741, 930, 1067
BfmI CTRYAG 1 cut(s) 759
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 4 cut(s) 936, 1019, 1029, 1184
BlnI CCTAGG 1 cut(s) 929
BlsI GCNGC 4 cut(s) 937, 1020, 1030, 1185
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 4 cut(s) 221, 222, 1227, 1297
Bme18I GGWCC 2 cut(s) 146, 1102
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 3 cut(s) 146, 492, 1102
BmiI GGNNCC 5 cut(s) 147, 148, 296, 756, 1233
BmrFI CCNGG 4 cut(s) 221, 222, 1227, 1297
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 182, 548
BplI GAGNNNNNCTC 2 cut(s) 815, 847
Bpu10I CCTNAGC 2 cut(s) 694, 1246
BpuMI CCSGG 2 cut(s) 221, 222
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 207, 220, 929, 1226
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 4 cut(s) 381, 500, 501, 1228
Bse1I ACTGG 1 cut(s) 593
Bse3DI GCAATG 2 cut(s) 714, 1203
BseBI CCWGG 2 cut(s) 1227, 1297
BseDI CCNNGG 4 cut(s) 207, 220, 929, 1226
BseGI GGATG 3 cut(s) 448, 597, 1261
BseLI CCNNNNNNNGG 4 cut(s) 381, 500, 501, 1228
BseMI GCAATG 2 cut(s) 714, 1203
BseMII CTCAG 3 cut(s) 1134, 1260, 1278
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 3 cut(s) 539, 836, 997
BseXI GCAGC 1 cut(s) 1015
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 5 cut(s) 202, 272, 374, 493, 1021
BsiHKAI GWGCWC 3 cut(s) 124, 329, 389
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 3 cut(s) 221, 273, 563
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 4 cut(s) 381, 500, 501, 1228
BsmAI GTCTC 5 cut(s) 332, 386, 651, 904, 974
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 2 cut(s) 638, 1133
BsnI GGCC 5 cut(s) 202, 272, 374, 493, 1021
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 4 cut(s) 124, 329, 389, 845
Bsp143I GATC 4 cut(s) 429, 1213, 1231, 1299
BspACI CCGC 4 cut(s) 719, 935, 1018, 1184
BspANI GGCC 5 cut(s) 202, 272, 374, 493, 1021
BspCNI CTCAG 3 cut(s) 1135, 1259, 1277
BspLI GGNNCC 5 cut(s) 147, 148, 296, 756, 1233
BspMAI CTGCAG 1 cut(s) 763
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 3 cut(s) 1226, 1239, 1307
BsrDI GCAATG 2 cut(s) 714, 1203
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 4 cut(s) 207, 220, 929, 1226
BssMI GATC 4 cut(s) 429, 1213, 1231, 1299
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 929
Bst2UI CCWGG 2 cut(s) 1227, 1297
Bst4CI ACNGT 4 cut(s) 211, 284, 520, 1080
Bst6I CTCTTC 4 cut(s) 2, 48, 88, 684
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 767
BstC8I GCNNGC 2 cut(s) 270, 1243
BstDEI CTNAG 6 cut(s) 567, 694, 1002, 1143, 1246, 1264
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 448, 597, 1261
BstKTI GATC 4 cut(s) 432, 1216, 1234, 1302
BstMAI GTCTC 5 cut(s) 332, 386, 651, 904, 974
BstMBI GATC 4 cut(s) 429, 1213, 1231, 1299
BstMWI GCNNNNNNNGC 2 cut(s) 572, 767
BstNI CCWGG 2 cut(s) 1227, 1297
BstNSI RCATGY 3 cut(s) 635, 707, 1245
BstSCI CCNGG 4 cut(s) 219, 220, 1225, 1295
BstSFI CTRYAG 1 cut(s) 759
BstV1I GCAGC 1 cut(s) 1015
BstV2I GAAGAC 2 cut(s) 182, 548
BstX2I RGATCY 1 cut(s) 1231
BstYI RGATCY 1 cut(s) 1231
BsuRI GGCC 5 cut(s) 202, 272, 374, 493, 1021
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 2 cut(s) 17, 327
BtsCI GGATG 3 cut(s) 448, 597, 1261
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 147, 525
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 270, 1243
Cfr13I GGNCC 3 cut(s) 146, 492, 1102
Cfr9I CCCGGG 1 cut(s) 220
Csp6I GTAC 2 cut(s) 280, 285
CviAII CATG 5 cut(s) 626, 632, 704, 1052, 1242
CviQI GTAC 2 cut(s) 280, 285
DdeI CTNAG 6 cut(s) 567, 694, 1002, 1143, 1246, 1264
DpnI GATC 4 cut(s) 431, 1215, 1233, 1301
DpnII GATC 4 cut(s) 429, 1213, 1231, 1299
DraIII CACNNNGTG 1 cut(s) 1192
EaeI YGGCCR 3 cut(s) 200, 270, 372
Eam1104I CTCTTC 4 cut(s) 2, 48, 88, 684
EarI CTCTTC 4 cut(s) 2, 48, 88, 684
Ecl136II GAGCTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 929
Eco24I GRGCYC 2 cut(s) 329, 845
Eco47I GGWCC 2 cut(s) 146, 1102
Eco53kI GAGCTC 1 cut(s) 327
Eco57I CTGAAG 2 cut(s) 596, 705
Eco88I CYCGRG 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 1225, 1295
EcoT14I CCWWGG 1 cut(s) 929
EcoT38I GRGCYC 2 cut(s) 329, 845
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 5 cut(s) 629, 635, 707, 1055, 1245
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 159
FatI CATG 5 cut(s) 625, 631, 703, 1051, 1241
FbaI TGATCA 1 cut(s) 1213
Fnu4HI GCNGC 4 cut(s) 936, 1019, 1029, 1184
FokI GGATG 3 cut(s) 455, 604, 1268
FriOI GRGCYC 2 cut(s) 329, 845
Fsp4HI GCNGC 4 cut(s) 936, 1019, 1029, 1184
FspBI CTAG 3 cut(s) 741, 930, 1067
GluI GCNGC 4 cut(s) 936, 1019, 1029, 1184
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 5 cut(s) 202, 272, 374, 493, 1021
HapII CCGG 3 cut(s) 221, 273, 563
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 5 cut(s) 629, 635, 707, 1055, 1245
HindIII AAGCTT 4 cut(s) 573, 608, 691, 790
HinfI GANTC 2 cut(s) 96, 451
HpaII CCGG 3 cut(s) 221, 273, 563
HphI GGTGA 2 cut(s) 496, 830
Hpy166II GTNNAC 3 cut(s) 207, 902, 955
Hpy188I TCNGA 6 cut(s) 92, 126, 172, 391, 782, 1267
Hpy188III TCNNGA 3 cut(s) 614, 683, 1217
Hpy8I GTNNAC 3 cut(s) 207, 902, 955
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 2 cut(s) 684, 1232
HpyCH4III ACNGT 4 cut(s) 211, 284, 520, 1080
HpyCH4IV ACGT 2 cut(s) 20, 174
HpyCH4V TGCA 7 cut(s) 228, 761, 770, 859, 1114, 1201, 1241
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 767
HpyF3I CTNAG 6 cut(s) 567, 694, 1002, 1143, 1246, 1264
HpySE526I ACGT 2 cut(s) 20, 174
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 5 cut(s) 629, 635, 707, 1055, 1245
KflI GGGWCCC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 1213
Kzo9I GATC 4 cut(s) 429, 1213, 1231, 1299
LmnI GCTCC 3 cut(s) 127, 547, 760
Lsp1109I GCAGC 1 cut(s) 1015
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 741, 930, 1067
MaeII ACGT 2 cut(s) 20, 174
MaeIII GTNAC 4 cut(s) 21, 484, 729, 1259
MalI GATC 4 cut(s) 431, 1215, 1233, 1301
MboI GATC 4 cut(s) 429, 1213, 1231, 1299
MfeI CAATTG 1 cut(s) 1042
MflI RGATCY 1 cut(s) 1231
MhlI GDGCHC 4 cut(s) 124, 329, 389, 845
MluCI AATT 6 cut(s) 127, 994, 1006, 1042, 1108, 1209
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 3 cut(s) 852, 1132, 1233
MnlI CCTC 9 cut(s) 37, 160, 192, 433, 483, 517, 814, 870, 975
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 9 cut(s) 348, 498, 585, 788, 813, 894, 915, 960, 993
MslI CAYNNNNRTG 2 cut(s) 212, 630
MspA1I CMGCKG 1 cut(s) 853
MspI CCGG 3 cut(s) 221, 273, 563
MspR9I CCNGG 4 cut(s) 221, 222, 1227, 1297
MunI CAATTG 1 cut(s) 1042
Mva1269I GAATGC 2 cut(s) 638, 1133
MvaI CCWGG 2 cut(s) 1227, 1297
MwoI GCNNNNNNNGC 2 cut(s) 572, 767
NciI CCSGG 2 cut(s) 221, 222
NdeII GATC 4 cut(s) 429, 1213, 1231, 1299
NlaIII CATG 5 cut(s) 629, 635, 707, 1055, 1245
NlaIV GGNNCC 5 cut(s) 147, 148, 296, 756, 1233
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 3 cut(s) 21, 484, 729
NspI RCATGY 3 cut(s) 635, 707, 1245
OliI CACNNNNGTG 1 cut(s) 212
PaeI GCATGC 1 cut(s) 1245
PaqCI CACCTGC 1 cut(s) 472
PciI ACATGT 2 cut(s) 631, 703
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PctI GAATGC 2 cut(s) 638, 1133
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 451
PfoI TCCNGGA 1 cut(s) 1295
PkrI GCNGC 4 cut(s) 937, 1020, 1030, 1185
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 146
PscI ACATGT 2 cut(s) 631, 703
PshBI ATTAAT 2 cut(s) 498, 993
Psp124BI GAGCTC 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 1225, 1295
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 1225, 1295
PspN4I GGNNCC 5 cut(s) 147, 148, 296, 756, 1233
PspPI GGNCC 3 cut(s) 146, 492, 1102
PspPPI RGGWCCY 1 cut(s) 146
PstI CTGCAG 1 cut(s) 763
PsuI RGATCY 1 cut(s) 1231
PvuII CAGCTG 1 cut(s) 853
RsaI GTAC 2 cut(s) 281, 286
RsaNI GTAC 2 cut(s) 280, 285
RseI CAYNNNNRTG 2 cut(s) 212, 630
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 9 cut(s) 348, 498, 585, 788, 813, 894, 915, 960, 993
SatI GCNGC 4 cut(s) 936, 1019, 1029, 1184
Sau3AI GATC 4 cut(s) 429, 1213, 1231, 1299
Sau96I GGNCC 3 cut(s) 146, 492, 1102
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 4 cut(s) 221, 222, 1227, 1297
SduI GDGCHC 4 cut(s) 124, 329, 389, 845
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 759
SinI GGWCC 2 cut(s) 146, 1102
SmaI CCCGGG 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 212, 630
SphI GCATGC 1 cut(s) 1245
Sse9I AATT 6 cut(s) 127, 994, 1006, 1042, 1108, 1209
SsiI CCGC 4 cut(s) 719, 935, 1018, 1184
SspMI CTAG 3 cut(s) 741, 930, 1067
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 4 cut(s) 219, 220, 1225, 1295
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 4 cut(s) 211, 284, 520, 1080
TaiI ACGT 2 cut(s) 23, 177
TaqI TCGA 3 cut(s) 131, 329, 839
TasI AATT 6 cut(s) 127, 994, 1006, 1042, 1108, 1209
TatI WGTACW 2 cut(s) 279, 284
TauI GCSGC 3 cut(s) 938, 1021, 1186
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 9 cut(s) 348, 498, 585, 788, 813, 894, 915, 960, 993
Tru9I TTAA 9 cut(s) 348, 498, 585, 788, 813, 894, 915, 960, 993
TscAI CASTG 2 cut(s) 147, 525
TseFI GTSAC 3 cut(s) 21, 484, 729
TseI GCWGC 1 cut(s) 1028
Tsp45I GTSAC 3 cut(s) 21, 484, 729
TspDTI ATGAA 2 cut(s) 620, 642
TspGWI ACGGA 2 cut(s) 560, 1115
TspMI CCCGGG 1 cut(s) 220
TspRI CASTG 2 cut(s) 147, 525
VpaK11BI GGWCC 2 cut(s) 146, 1102
VspI ATTAAT 2 cut(s) 498, 993
XapI RAATTY 3 cut(s) 127, 1006, 1108
XceI RCATGY 3 cut(s) 635, 707, 1245
XmaI CCCGGG 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 929
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 3 cut(s) 741, 930, 1067
ZraI GACGTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.