Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002054

Physical Location & Seq

Genomic Coordinates Reverse (-)

17949879 .. 17951210

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATGGTGTCATCTCTAACTATTGGAAACACTATTATCAGAAAAGCATCATTTCTCAAACCTCTTGTGCCTTTACAAACAAATGATCCTCTTTCTCATCTCCCTACCTATTCTTTTCCTTCCCTCCCTCCTAATTTTGATCCAAAAGAATGGTCTTTGGATGTTTCATTTCTAGGATGGGTAACTTGGGGTCATGAAGCATGGAATTCATGGGTTGATGGTATGGCATTGAAACACCAAGACCTATGGAAGAGTGTTGTCCTTGGGGACTCTGTTGTTGCTTATAATTTGACTTCTGAACAAGTTCGTATTGAAGAGTCTCTAGATAATGCAAGGAAATTGTCCAATAAAACACCATCGAAGAAGGCTATCACAAGCCTTTGGATGAACCGTTTCATGGCAAGCGAATCTGAATACGAGCATGAAGCATTCATCTCATATTGGTTGTCAAGGTTTGTATTCTATAGTACTGTGATTGAAAAACGAGCTCTAACCATTGCAACTAAATTGACTACGGGTAGCCAAGTGGATCTTGCATCAGCGGTTCTTTTTGGTATTTATCGAGACTTGACTTTGTTAAAGCTCGAAATTAGGAGGACTCTAGACTCGGTAGACGAAGTCGATTTCAGGTGGTGCCCTTATGCTTGGGTTAATCTGAACAATGAGAAAACGGTTCTGGTTGGACCTGGTTTAGATAATGTATTGTTCAAATTTACAATATGCTTAGCCATACGGGATGGTAGGTTAATTGGGTTTGACTCCGAAGAAATGTACCGACCACATCATGTGGCTAGACAATTTGGTTATGATCAAGACCTTCCGTGTTGCACAACTCTACTAGCTGCAAGTGATGTTCCTAATATGCATTCTGGAAATTGGAGACTGCATGTTCCGGCTAGGAATTCAGAGGTGGGTGTTAGCCTCCGATACTCCAATTGGTGGAGGAAATCAATCTTGGGAAATAATTCCCCATTTCCTCCCGGGTTTCCACCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

333

Amino Acids

37.88

Weight (kDa)

7.09

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	87 - 194	3.8e-19	Plant mobile domain
PMD	PF10536	196 - 315	4.5e-16	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32120 AT1G50750 AT1G50760 AT1G50770 AT1G50790 AT1G50820 AT1G50820 AT1G50830 AT1G51538 AT4G16050 AT5G18510
fragaria_vesca	FvH4_3g22270 FvH4_6g23881 FvH4_7g03072
malus_domestica	MD03G1206300.v1.1
prunus_persica	Prupe.4G209700_v2.0.a1 Prupe.4G209800_v2.0.a1
pyrus_communis	pycom03g15550
rosa_chinensis	RchiOBHm_Chr5g0038341 RchiOBHm_Chr5g0038431 RchiOBHm_Chr5g0038611
rosa_laevigata	RLG00000033849 RLG00000033852 RLG00000033857 RLG00000033858
rosa_multiflora	Rmu_sc0009149.1_g000008 Rmu_sc0027059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042500 Rroxscaffold_1G00042570 Rroxscaffold_1G00042600 Rroxscaffold_1G00042610 Rroxscaffold_1G00042660
rosa_rugosa	Rorug05G0172100
rosa_samantha	Rh5AG259500 Rh5AG259900 Rh5BG263400 Rh5BG263800 Rh5CG295800 Rh5CG296100 Rh5DG272300 Rh5DG272600
rosa_wichuraiana	Rw0G013280 Rw5G024300 Rw5G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	633
AccB7I	CCANNNNNTGG	1 cut(s)	939
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	1 cut(s)	542
AclWI	GGATC	3 cut(s)	80, 134, 537
AcsI	RAATTY	3 cut(s)	205, 710, 901
AfaI	GTAC	2 cut(s)	469, 773
AfiI	CCNNNNNNNGG	2 cut(s)	397, 939
AgsI	TTSAA	4 cut(s)	232, 314, 479, 709
AjnI	CCWGG	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
AluBI	AGCT	3 cut(s)	488, 583, 842
AluI	AGCT	3 cut(s)	488, 583, 842
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	3 cut(s)	324, 558, 874
AlwI	GGATC	3 cut(s)	80, 134, 537
Ama87I	CYCGRG	1 cut(s)	980
ApeKI	GCWGC	1 cut(s)	842
ApoI	RAATTY	3 cut(s)	205, 710, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
Asp700I	GAANNNNTTC	3 cut(s)	303, 392, 964
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	2 cut(s)	981, 982
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	683
BaeGI	GKGCMC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	4 cut(s)	171, 212, 364, 731
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	2 cut(s)	981, 982
BcoDI	GTCTC	3 cut(s)	324, 558, 874
BfaI	CTAG	6 cut(s)	173, 323, 602, 792, 839, 897
BfmI	CTRYAG	1 cut(s)	463
BisI	GCNGC	1 cut(s)	843
BlpI	GCTNAGC	1 cut(s)	724
BlsI	GCNGC	1 cut(s)	844
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	687, 981, 982
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	1 cut(s)	635
BmrFI	CCNGG	3 cut(s)	687, 981, 982
BmsI	GCATC	2 cut(s)	56, 545
Bpu1102I	GCTNAGC	1 cut(s)	724
BpuMI	CCSGG	2 cut(s)	981, 982
BsaJI	CCNNGG	2 cut(s)	262, 980
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 939
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	262, 980
BseGI	GGATG	4 cut(s)	166, 182, 390, 742
BseLI	CCNNNNNNNGG	2 cut(s)	397, 939
BseMI	GCAATG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	1 cut(s)	829
BshNI	GGYRCC	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	490
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	2 cut(s)	893, 981
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	397, 939
BsmAI	GTCTC	3 cut(s)	324, 558, 874
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	2 cut(s)	428, 865
BsoBI	CYCGRG	1 cut(s)	980
Bsp1286I	GDGCHC	2 cut(s)	490, 638
Bsp143I	GATC	4 cut(s)	85, 139, 529, 808
Bsp1720I	GCTNAGC	1 cut(s)	724
BspACI	CCGC	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	635
BspPI	GGATC	3 cut(s)	80, 134, 537
BspT107I	GGYRCC	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	262, 980
BssMI	GATC	4 cut(s)	85, 139, 529, 808
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	392, 472, 673
Bst6I	CTCTTC	2 cut(s)	245, 309
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	724
BstF5I	GGATG	4 cut(s)	166, 182, 390, 742
BstKTI	GATC	4 cut(s)	88, 142, 532, 811
BstMAI	GTCTC	3 cut(s)	324, 558, 874
BstMBI	GATC	4 cut(s)	85, 139, 529, 808
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	890
BstSCI	CCNGG	3 cut(s)	685, 979, 980
BstSFI	CTRYAG	1 cut(s)	463
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	529
BtsCI	GGATG	4 cut(s)	166, 182, 390, 742
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	683
Cfr9I	CCCGGG	1 cut(s)	980
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	2 cut(s)	468, 772
CviAII	CATG	7 cut(s)	194, 201, 210, 397, 422, 785, 887
CviQI	GTAC	2 cut(s)	468, 772
DdeI	CTNAG	1 cut(s)	724
DpnI	GATC	4 cut(s)	87, 141, 531, 810
DpnII	GATC	4 cut(s)	85, 139, 529, 808
Eam1104I	CTCTTC	2 cut(s)	245, 309
EarI	CTCTTC	2 cut(s)	245, 309
Ecl136II	GAGCTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	980
EcoICRI	GAGCTC	1 cut(s)	488
EcoRI	GAATTC	2 cut(s)	205, 901
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	7 cut(s)	197, 204, 213, 400, 425, 788, 890
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	7 cut(s)	193, 200, 209, 396, 421, 784, 886
FbaI	TGATCA	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	1 cut(s)	843
FokI	GGATG	4 cut(s)	173, 189, 397, 749
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	843
FspBI	CTAG	6 cut(s)	173, 323, 602, 792, 839, 897
GluI	GCNGC	1 cut(s)	843
HapII	CCGG	2 cut(s)	893, 981
Hin1II	CATG	7 cut(s)	197, 204, 213, 400, 425, 788, 890
HinfI	GANTC	6 cut(s)	269, 317, 407, 598, 605, 758
HpaII	CCGG	2 cut(s)	893, 981
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	7 cut(s)	41, 298, 412, 657, 763, 907, 926
Hpy188III	TCNNGA	6 cut(s)	194, 323, 563, 602, 812, 870
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	3 cut(s)	129, 358, 827
HpyCH4III	ACNGT	3 cut(s)	392, 472, 673
HpyCH4V	TGCA	7 cut(s)	332, 500, 536, 828, 845, 865, 886
HpyF3I	CTNAG	1 cut(s)	724
Hsp92II	CATG	7 cut(s)	197, 204, 213, 400, 425, 788, 890
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	4 cut(s)	85, 139, 529, 808
LpnPI	CCDG	7 cut(s)	613, 662, 672, 699, 855, 906, 994
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	2 cut(s)	56, 545
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	6 cut(s)	173, 323, 602, 792, 839, 897
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	87, 141, 531, 810
MboI	GATC	4 cut(s)	85, 139, 529, 808
MboII	GAAGA	4 cut(s)	262, 326, 373, 776
MfeI	CAATTG	1 cut(s)	934
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	490, 638
MlyI	GAGTC	5 cut(s)	263, 326, 592, 599, 752
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	9 cut(s)	72, 99, 134, 138, 588, 901, 932, 936, 987
Mph1103I	ATGCAT	1 cut(s)	867
MroXI	GAANNNNTTC	3 cut(s)	303, 392, 964
MseI	TTAA	3 cut(s)	578, 651, 746
MslI	CAYNNNNRTG	1 cut(s)	994
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	2 cut(s)	893, 981
MspR9I	CCNGG	3 cut(s)	687, 981, 982
MunI	CAATTG	1 cut(s)	934
Mva1269I	GAATGC	2 cut(s)	428, 865
MvaI	CCWGG	1 cut(s)	687
NciI	CCSGG	2 cut(s)	981, 982
NdeII	GATC	4 cut(s)	85, 139, 529, 808
NlaIII	CATG	7 cut(s)	197, 204, 213, 400, 425, 788, 890
NlaIV	GGNNCC	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	1 cut(s)	890
PagI	TCATGA	1 cut(s)	193
PctI	GAATGC	2 cut(s)	428, 865
PdmI	GAANNNNTTC	3 cut(s)	303, 392, 964
PfeI	GAWTC	1 cut(s)	407
PflFI	GACNNNGTC	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	939
PkrI	GCNGC	1 cut(s)	844
PleI	GAGTC	5 cut(s)	263, 325, 592, 599, 752
PpsI	GAGTC	5 cut(s)	263, 325, 592, 599, 752
PsiI	TTATAA	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	1 cut(s)	635
PspPI	GGNCC	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	617
RsaI	GTAC	2 cut(s)	469, 773
RsaNI	GTAC	2 cut(s)	468, 772
RseI	CAYNNNNRTG	1 cut(s)	994
SacI	GAGCTC	1 cut(s)	490
SaqAI	TTAA	3 cut(s)	578, 651, 746
SatI	GCNGC	1 cut(s)	843
Sau3AI	GATC	4 cut(s)	85, 139, 529, 808
Sau96I	GGNCC	1 cut(s)	683
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	5 cut(s)	263, 326, 592, 599, 752
ScrFI	CCNGG	3 cut(s)	687, 981, 982
SduI	GDGCHC	2 cut(s)	490, 638
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	2 cut(s)	56, 545
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	683
SmaI	CCCGGG	1 cut(s)	982
SmiMI	CAYNNNNRTG	1 cut(s)	994
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	6 cut(s)	173, 323, 602, 792, 839, 897
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	3 cut(s)	685, 979, 980
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	392, 472, 673
TaqI	TCGA	4 cut(s)	359, 562, 585, 621
TatI	WGTACW	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	578, 651, 746
Tru9I	TTAA	3 cut(s)	578, 651, 746
TseI	GCWGC	1 cut(s)	842
TspDTI	ATGAA	7 cut(s)	156, 198, 210, 385, 401, 421, 438
TspGWI	ACGGA	1 cut(s)	810
TspMI	CCCGGG	1 cut(s)	980
Tth111I	GACNNNGTC	1 cut(s)	617
Van91I	CCANNNNNTGG	1 cut(s)	939
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	3 cut(s)	205, 710, 901
XbaI	TCTAGA	2 cut(s)	322, 601
XceI	RCATGY	1 cut(s)	890
XmaI	CCCGGG	1 cut(s)	980
XmiI	GTMKAC	1 cut(s)	612
XmnI	GAANNNNTTC	3 cut(s)	303, 392, 964
XspI	CTAG	6 cut(s)	173, 323, 602, 792, 839, 897
ZrmI	AGTACT	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.