Rh5CG295800

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002054
Physical Location & Seq
Reverse (-)
32578570 .. 32579712
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG295800.1

Sequence Viewer

Length: 1143 bp
ATGGCAAAGAGACCAGAAACGTCACATTCTCATCGCATATACGAGGAACGAGAAGAGAAACTCGTGTCTTCAAAAGACGGGAAACAATTCAAAAGAGTTGCAAGGTTTCTCAAACCCTGTGCTCCGAATTCAAGCGAAGCAGTGGGACCCTCAAATACTCCATTGTTGTCTGATGTCTTTCCTCACAGTCTTCAACAATGGCCGTCCACGGTTGTGTTCCCAGGTTGCAAGAAGCCCCAGAAAAAATGGGTGGAGTGGATTGATAGGCTAGCCGGAAAGTACTGTACTATTTGGAACCAAGTTGGGATTTGCGATGCTATTATGAGCTCGAAATATGAGACCAACTTTAACAAGGATTTGGTGCTGGTTTTGGCTGAGTTTTGGTGCTCAGAGACTAATACGTTCGTGTTTGATTGGGGTGAAGCGACGATCACAATGGAGGATGTGATGGTTCTAGGTGGGTTTTCGGTTCTGGGTAAGCAGGTGACAAGGCCCATTAATGGGGTGTTGATGGAAACAGTGGAGATGGAGAAGAAGAAGACGGAGCTGACTAGAACTCCGGCGAGGAAAGCTTATCACTTAAACTGGATGACGCATTTTATGAAGCTTCAGGACTACAAGCATGAACATGTGGCATTCCTGTCTCTGTGGTTGGCAAGGTTCGTCTTTCCTTCTCTTCCTGAAGACAGCTTAGGCAAACATGTGTTTCCCATTGCTGTTCTTTTGTCACAGGGCACTAGAGTTGCTCTGGCTCTTGCAGTTCTTGCAGGGCTTTTCAAAGATTTAAGCTTTTTGGAAAACCAAGCAATTAAGGGTGAGGAGATGATCTCTGTTTGGAGCCCATTTCAGCTGTTGCAGTTGTGGGTGTTGGAGAGGTTTCAGGGTGTGGTTAAGAGTCCACCAAAGAGACTGAACCCCGGTGAGCCTAGGGCGGCTCGGTGGAATAAAGTGAACATTAAGATTAGTCTTCCTGATGTGAGGAGAGAGGTTAACTTGGCTAAGAATTTTCGGTGGCGGCCTTATACTGCTGAACTGACCAATTGGCTACATGGTTCTTACTACCAAGCTAAGGAACTATGCTTTTATGATAAAACTACGGACCAGAATTTGCAGTCTTATGTTAAATGCTTGTGTTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

380

Amino Acids

43.77

Weight (kDa)

9.13

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 102 - 376 1.2e-67 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AciI CCGC 2 cut(s) 932, 1015
AcoI YGGCCR 1 cut(s) 200
AcsI RAATTY 3 cut(s) 127, 1003, 1105
AcuI CTGAAG 2 cut(s) 593, 702
AfaI GTAC 2 cut(s) 281, 286
AfiI CCNNNNNNNGG 3 cut(s) 500, 501, 1069
AflIII ACRYGT 2 cut(s) 628, 700
AgsI TTSAA 5 cut(s) 72, 91, 132, 194, 778
AjnI CCWGG 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 8 cut(s) 327, 547, 572, 607, 690, 789, 850, 1067
AluI AGCT 8 cut(s) 327, 547, 572, 607, 690, 789, 850, 1067
Alw21I GWGCWC 3 cut(s) 124, 329, 389
Alw26I GTCTC 5 cut(s) 4, 332, 386, 648, 901
AoxI GGCC 3 cut(s) 200, 491, 1016
ApoI RAATTY 3 cut(s) 127, 1003, 1105
AseI ATTAAT 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 86
AspA2I CCTAGG 1 cut(s) 926
AspS9I GGNCC 3 cut(s) 146, 492, 1099
AsuC2I CCSGG 1 cut(s) 918
AsuHPI GGTGA 4 cut(s) 431, 496, 827, 932
AsuNHI GCTAGC 1 cut(s) 268
AvaII GGWCC 2 cut(s) 146, 1099
AvrII CCTAGG 1 cut(s) 926
BaeGI GKGCMC 1 cut(s) 737
BanII GRGCYC 2 cut(s) 329, 842
BauI CACGAG 1 cut(s) 62
BbsI GAAGAC 5 cut(s) 60, 182, 545, 690, 959
Bbv12I GWGCWC 3 cut(s) 124, 329, 389
BccI CCATC 3 cut(s) 442, 505, 520
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 222
BcnI CCSGG 1 cut(s) 918
BcoDI GTCTC 5 cut(s) 4, 332, 386, 648, 901
BfaI CTAG 5 cut(s) 269, 455, 552, 738, 927
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 2 cut(s) 933, 1016
BlnI CCTAGG 1 cut(s) 926
BlsI GCNGC 2 cut(s) 934, 1017
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 2 cut(s) 222, 918
Bme18I GGWCC 2 cut(s) 146, 1099
BmgT120I GGNCC 3 cut(s) 146, 492, 1099
BmiI GGNNCC 4 cut(s) 147, 148, 296, 839
BmrFI CCNGG 2 cut(s) 222, 918
BmsI GCATC 1 cut(s) 304
BmtI GCTAGC 1 cut(s) 272
BpiI GAAGAC 5 cut(s) 60, 182, 545, 690, 959
BplI GAGNNNNNCTC 2 cut(s) 812, 844
Bpu10I CCTNAGC 2 cut(s) 691, 1068
BpuMI CCSGG 1 cut(s) 918
BsaI GGTCTC 2 cut(s) 4, 332
BsaJI CCNNGG 4 cut(s) 207, 220, 916, 926
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 501, 1069
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 4 cut(s) 207, 220, 916, 926
BseGI GGATG 2 cut(s) 448, 594
BseLI CCNNNNNNNGG 3 cut(s) 500, 501, 1069
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 2 cut(s) 366, 402
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 2 cut(s) 833, 994
BseSI GKGCMC 1 cut(s) 737
BshFI GGCC 3 cut(s) 202, 493, 1018
BsiHKAI GWGCWC 3 cut(s) 124, 329, 389
BsiSI CCGG 3 cut(s) 273, 560, 918
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 500, 501, 1069
BsmAI GTCTC 5 cut(s) 4, 332, 386, 648, 901
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 3 cut(s) 202, 493, 1018
Bso31I GGTCTC 2 cut(s) 4, 332
Bsp1286I GDGCHC 5 cut(s) 124, 329, 389, 737, 842
Bsp143I GATC 2 cut(s) 429, 825
BspACI CCGC 2 cut(s) 932, 1015
BspANI GGCC 3 cut(s) 202, 493, 1018
BspCNI CTCAG 2 cut(s) 367, 401
BspLI GGNNCC 4 cut(s) 147, 148, 296, 839
BspMI ACCTGC 1 cut(s) 472
BspOI GCTAGC 1 cut(s) 272
BspTNI GGTCTC 2 cut(s) 4, 332
BsrDI GCAATG 1 cut(s) 711
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 4 cut(s) 207, 220, 916, 926
BssMI GATC 2 cut(s) 429, 825
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 926
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 4 cut(s) 188, 211, 284, 520
Bst6I CTCTTC 2 cut(s) 48, 681
BstAPI GCANNNNNTGC 1 cut(s) 764
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 6 cut(s) 375, 388, 691, 999, 1068, 1140
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 448, 594
BstKTI GATC 2 cut(s) 432, 828
BstMAI GTCTC 5 cut(s) 4, 332, 386, 648, 901
BstMBI GATC 2 cut(s) 429, 825
BstMWI GCNNNNNNNGC 2 cut(s) 569, 764
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 632, 704
BstSCI CCNGG 2 cut(s) 220, 916
BstSLI GKGCMC 1 cut(s) 737
BstV2I GAAGAC 5 cut(s) 60, 182, 545, 690, 959
BsuRI GGCC 3 cut(s) 202, 493, 1018
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 2 cut(s) 17, 327
BtsCI GGATG 2 cut(s) 448, 594
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 147, 525
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 146, 492, 1099
CseI GACGC 1 cut(s) 601
Csp6I GTAC 2 cut(s) 280, 285
CviAII CATG 4 cut(s) 623, 629, 701, 1049
CviQI GTAC 2 cut(s) 280, 285
DdeI CTNAG 6 cut(s) 375, 388, 691, 999, 1068, 1140
DpnI GATC 2 cut(s) 431, 827
DpnII GATC 2 cut(s) 429, 825
EaeI YGGCCR 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 48, 681
EarI CTCTTC 2 cut(s) 48, 681
Ecl136II GAGCTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 926
Eco24I GRGCYC 2 cut(s) 329, 842
Eco31I GGTCTC 2 cut(s) 4, 332
Eco47I GGWCC 2 cut(s) 146, 1099
Eco53kI GAGCTC 1 cut(s) 327
Eco57I CTGAAG 2 cut(s) 593, 702
EcoICRI GAGCTC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 926
EcoT38I GRGCYC 2 cut(s) 329, 842
ErhI CCWWGG 1 cut(s) 926
FaeI CATG 4 cut(s) 626, 632, 704, 1052
FaqI GGGAC 1 cut(s) 159
FatI CATG 4 cut(s) 622, 628, 700, 1048
Fnu4HI GCNGC 2 cut(s) 933, 1016
FokI GGATG 2 cut(s) 455, 601
FriOI GRGCYC 2 cut(s) 329, 842
Fsp4HI GCNGC 2 cut(s) 933, 1016
FspBI CTAG 5 cut(s) 269, 455, 552, 738, 927
GluI GCNGC 2 cut(s) 933, 1016
HaeIII GGCC 3 cut(s) 202, 493, 1018
HapII CCGG 3 cut(s) 273, 560, 918
HgaI GACGC 1 cut(s) 601
Hin1II CATG 4 cut(s) 626, 632, 704, 1052
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HindIII AAGCTT 3 cut(s) 570, 605, 787
HinfI GANTC 1 cut(s) 895
HpaI GTTAAC 1 cut(s) 991
HpaII CCGG 3 cut(s) 273, 560, 918
HphI GGTGA 4 cut(s) 431, 496, 827, 932
Hpy166II GTNNAC 4 cut(s) 207, 899, 952, 991
Hpy188I TCNGA 3 cut(s) 126, 172, 391
Hpy188III TCNNGA 3 cut(s) 611, 680, 971
Hpy8I GTNNAC 4 cut(s) 207, 899, 952, 991
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 1 cut(s) 681
HpyCH4III ACNGT 4 cut(s) 188, 211, 284, 520
HpyCH4IV ACGT 2 cut(s) 20, 401
HpyCH4V TGCA 6 cut(s) 101, 228, 758, 767, 856, 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 764
HpyF3I CTNAG 6 cut(s) 375, 388, 691, 999, 1068, 1140
HpySE526I ACGT 2 cut(s) 20, 401
Hsp92II CATG 4 cut(s) 626, 632, 704, 1052
KflI GGGWCCC 1 cut(s) 146
KspAI GTTAAC 1 cut(s) 991
Kzo9I GATC 2 cut(s) 429, 825
LmnI GCTCC 3 cut(s) 127, 544, 837
LweI GCATC 1 cut(s) 304
MaeI CTAG 5 cut(s) 269, 455, 552, 738, 927
MaeII ACGT 2 cut(s) 20, 401
MaeIII GTNAC 3 cut(s) 21, 484, 726
MalI GATC 2 cut(s) 431, 827
MboI GATC 2 cut(s) 429, 825
MboII GAAGA 9 cut(s) 60, 65, 182, 544, 547, 550, 668, 695, 959
MfeI CAATTG 1 cut(s) 1039
MhlI GDGCHC 5 cut(s) 124, 329, 389, 737, 842
MluCI AATT 6 cut(s) 86, 127, 807, 1003, 1039, 1105
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 1 cut(s) 849
MnlI CCTC 9 cut(s) 37, 160, 192, 433, 558, 811, 867, 972, 979
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 9 cut(s) 348, 498, 581, 785, 810, 891, 957, 990, 1122
MslI CAYNNNNRTG 2 cut(s) 212, 627
MspA1I CMGCKG 1 cut(s) 850
MspI CCGG 3 cut(s) 273, 560, 918
MspR9I CCNGG 2 cut(s) 222, 918
MunI CAATTG 1 cut(s) 1039
Mva1269I GAATGC 1 cut(s) 635
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 569, 764
NciI CCSGG 1 cut(s) 918
NdeII GATC 2 cut(s) 429, 825
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 4 cut(s) 626, 632, 704, 1052
NlaIV GGNNCC 4 cut(s) 147, 148, 296, 839
NmuCI GTSAC 3 cut(s) 21, 484, 726
NspI RCATGY 2 cut(s) 632, 704
OliI CACNNNNGTG 1 cut(s) 212
PaqCI CACCTGC 1 cut(s) 472
PciI ACATGT 2 cut(s) 628, 700
PctI GAATGC 1 cut(s) 635
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 934, 1017
PleI GAGTC 1 cut(s) 903
PpsI GAGTC 1 cut(s) 903
PpuMI RGGWCCY 1 cut(s) 146
PscI ACATGT 2 cut(s) 628, 700
PshBI ATTAAT 1 cut(s) 498
Psp124BI GAGCTC 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 4 cut(s) 147, 148, 296, 839
PspPI GGNCC 3 cut(s) 146, 492, 1099
PspPPI RGGWCCY 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 850
RsaI GTAC 2 cut(s) 281, 286
RsaNI GTAC 2 cut(s) 280, 285
RseI CAYNNNNRTG 2 cut(s) 212, 627
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 9 cut(s) 348, 498, 581, 785, 810, 891, 957, 990, 1122
SatI GCNGC 2 cut(s) 933, 1016
Sau3AI GATC 2 cut(s) 429, 825
Sau96I GGNCC 3 cut(s) 146, 492, 1099
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 2 cut(s) 222, 918
SduI GDGCHC 5 cut(s) 124, 329, 389, 737, 842
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 2 cut(s) 146, 1099
SmiMI CAYNNNNRTG 2 cut(s) 212, 627
Sse9I AATT 6 cut(s) 86, 127, 807, 1003, 1039, 1105
SsiI CCGC 2 cut(s) 932, 1015
SspMI CTAG 5 cut(s) 269, 455, 552, 738, 927
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 220, 916
StyI CCWWGG 1 cut(s) 926
TaaI ACNGT 4 cut(s) 188, 211, 284, 520
TaiI ACGT 2 cut(s) 23, 404
TaqI TCGA 1 cut(s) 329
TasI AATT 6 cut(s) 86, 127, 807, 1003, 1039, 1105
TatI WGTACW 2 cut(s) 279, 284
TauI GCSGC 2 cut(s) 935, 1018
Tru1I TTAA 9 cut(s) 348, 498, 581, 785, 810, 891, 957, 990, 1122
Tru9I TTAA 9 cut(s) 348, 498, 581, 785, 810, 891, 957, 990, 1122
TscAI CASTG 2 cut(s) 147, 525
TseFI GTSAC 3 cut(s) 21, 484, 726
Tsp45I GTSAC 3 cut(s) 21, 484, 726
TspDTI ATGAA 2 cut(s) 617, 639
TspGWI ACGGA 2 cut(s) 557, 1112
TspRI CASTG 2 cut(s) 147, 525
VpaK11BI GGWCC 2 cut(s) 146, 1099
VspI ATTAAT 1 cut(s) 498
XapI RAATTY 3 cut(s) 127, 1003, 1105
XceI RCATGY 2 cut(s) 632, 704
XmaJI CCTAGG 1 cut(s) 926
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 5 cut(s) 269, 455, 552, 738, 927
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.