AT1G50830

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002054
Physical Location & Seq
Reverse (-)
18835271 .. 18838029
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50830.1

Sequence Viewer

Length: 2307 bp
ATGGAGAACGCATCGTCATCGTCGAGTCTTCTCATTGAAGAGAGAGAAGAAGTAATGGTAACTGATAAAGGTCGTTGCTTGAGAAAAAACCATTTCTTAAAACCCTTTGTTACCTCCATCAATGGAGGCTCTGTGGCTGAGCTTCCCCGCCGTGATGAACGTCTCTCTGTTTCCTCTTCGCAGCTACTAAAGCTCTTCTCTTTGCGGAGAACTTTCTCTGGGTTTTGGGTTGTAGATGCTCCTTTCGTATCTTGGCTTGCAAAAATGGAAGCTTTACACGCACAAACATGGAGAAAAGCTGGGATTTTTGAAGCAATTAAAGTATCTACTTACAGTATCACCAAAAACCCATCTCTGATTCTCTCTGTTTCTGAAAAATGGTGCCCTGAAACCAAATCGTTTGTCTTCCCTTGGGGTGAAGCAACCATAACTTTAGAGGATGTAATGGTGCTTCTAGGGTTTTCCGTTTTGGGCTCTCCGGTCTTTGCCCCTTTAGAAACCTCGGAGACGAGAGATTCGGTAAAGAAACTGGAGAATGTAAGAATCCAGCATATGAATAGCAGCACAGACAGGCGTGTGAGCCAAAAATCATGGGTTTCGACCTTCTTGGGTAGAGGTGGGGACATGGAGCATGTAGCGTTTCTGGTATTGTGGCTTTCGCTTTTCGTATTTCCAGTTAAATCTCGTCGTAATATCTCGAATCATGTTTTCCCAATAGCTGTTCGTTTAGCTAGAGGGGAAAGGATAGCTCTTGCCCCTGCTATTCTCGCAATCCTCTACAGAGATTTGGATCGAATCCATGAGGTATCTAGAGAAGATTGTGTTGACAAATTCCATCTGGAATCTTTGTTTAAGTTAGTACAAGTTTGGACATGGGAAAGATTCAGGAACATAAGACCAAAAGCCAGTGACATTCCCAAAGGTGAACCTAGAATAGCTCAGTGGCATGGTTTGCATCGAAGATCTAAGGATGCGTGGTTCTGTTTTGATGATTTTGAGTGGCGTCCTTATACTAAAGCATTGAACAATTGGAACCCATTTCGGTTTTACCTTGAGGAAGCTATTTGGGTGACTGTTGATGAAAGTATTGATGATGAGTTTGCTTCTTTTGCTCGGTGTGTGACAGTTTCTCAGATTGTTGGAGATGGTTTTGTAGAGGATTACTTCCCAAATAGAGTGGCGAGACAGTTCGGTTTGGATCAAGATCTTCCTGGTTTGGCTACTTGTCAAAGAAACTCCACAGAAAAGGAAGCTTGGAATGATTACAATAAGTCTCTTATTGGTTTAAACCTCTACATGCCTTCTCGCCTCGATCAAGGTTCTGTCACTGCGAGATACCGAGTCTGGTGGCTGAAATCAGTTTCAAAGTTTCTGAGTCCTGAAGAGATGAAGGAAGAATCAACTGAAACTTTTAACGCAAGGAAGACATTTGATCATTATGACGAAGATTATGATGATGATATTGATGCATCTCCCAAGGTACTGCCTTTGAGTCAGGTGTTTCAGAAATTGGAAGAAGGTTTTCCCGCAAAACGCAGAAGGTCTGTGATACATAGATTGGTAAAGCAAGATAAGATAGGTGGGTGTGTGAACAGTCGTGTATCATCAGGTTGGAAGATGAACAACACAAGTGAGGATTTTACAAACAATAGAAGCATTTACAAGCCAGTGGTGCTGAAGCGAGCTCATGGGGGTAATGATGGTATTTCTACGGGTGAAGAAAAGGATAACATGACTATTGCTCAAAGGATCAGATCTAAGGAGAAGTATAGCAGTAATGCGGAGAATACTCTAGGAGATGCTTCTGAAACACTTGGAAAAAGGGCTAGAAGATATATGACGGTGGATAGCGATGACGACTCAGAGCCTTGTCAAAAGCTTGCTTCGACAAAAATAGAGCAAAGGAGTGAAGAGGATGATGAAACTACAAGCAAATCACACAAGACAAGGGAGATTTTCAATGATTTTGAGGTTGACGTGATTGGAAATACTGCAGGGAAGAAGAGTATGATCGATGATGAGCAGCAACATAATGGATCGACTATGAAAAGCATTGGAAGCAATGGGAGCAAGAAAGCAGAGTTTTTGGTCCATAAAAATAGCGAAAAGCATAGATGCAATGAGAAAATGTGCAGTGAAGTTAAAAAGCAAGAAGAAATTGATGAAAGGTTGAAAGAGAGAAAGCTTGCAATAAAGGAGATGGAACTGAAGCTTGAGGCACATATGATTGAGATGGAGAAGACTTTGTCCATGATTAGAAAGTGGAAAATCAGAGGAAACCAGATTAAAAGTCGAGTTTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

768

Amino Acids

88.41

Weight (kDa)

8.44

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 101 - 450 2.2e-122 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 381
AciI CCGC 4 cut(s) 148, 205, 1527, 1781
AclWI GGATC 4 cut(s) 798, 1206, 1757, 2044
AcsI RAATTY 1 cut(s) 830
AcuI CTGAAG 3 cut(s) 1401, 1697, 2228
AcyI GRCGYC 1 cut(s) 1003
AfaI GTAC 2 cut(s) 861, 1482
AgsI TTSAA 6 cut(s) 38, 311, 1024, 1365, 1960, 2173
AjiI CACGTC 1 cut(s) 1978
AjnI CCWGG 1 cut(s) 1210
AloI GAACNNNNNNTCC 2 cut(s) 962, 994
Alw21I GWGCWC 1 cut(s) 1687
Alw26I GTCTC 4 cut(s) 167, 500, 1177, 1278
AlwI GGATC 4 cut(s) 798, 1206, 1757, 2044
ApeKI GCWGC 3 cut(s) 181, 561, 2023
ApoI RAATTY 1 cut(s) 830
ArsI GACNNNNNNTTYG 4 cut(s) 387, 419, 499, 531
Asp700I GAANNNNTTC 1 cut(s) 1521
AspS9I GGNCC 1 cut(s) 2089
AsuHPI GGTGA 5 cut(s) 331, 428, 935, 1081, 1727
AvaII GGWCC 1 cut(s) 2089
BaeGI GKGCMC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 381
BanII GRGCYC 2 cut(s) 476, 1687
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BbsI GAAGAC 4 cut(s) 20, 397, 1430, 2246
Bbv12I GWGCWC 1 cut(s) 1687
BbvI GCAGC 3 cut(s) 193, 573, 2035
BccI CCATC 7 cut(s) 125, 358, 843, 1139, 1694, 2194, 2227
BceAI ACGGC 1 cut(s) 135
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 1212
BclI TGATCA 1 cut(s) 1432
BcoDI GTCTC 4 cut(s) 167, 500, 1177, 1278
BfaI CTAG 6 cut(s) 455, 732, 810, 930, 1793, 1827
BfmI CTRYAG 2 cut(s) 778, 1992
BglII AGATCT 3 cut(s) 962, 1204, 1754
BisI GCNGC 3 cut(s) 182, 562, 2024
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 3 cut(s) 183, 563, 2025
Bme1390I CCNGG 1 cut(s) 1212
Bme18I GGWCC 1 cut(s) 2089
BmgBI CACGTC 1 cut(s) 1978
BmgT120I GGNCC 1 cut(s) 2089
BmiI GGNNCC 2 cut(s) 383, 1034
BmrFI CCNGG 1 cut(s) 1212
BmsI GCATC 8 cut(s) 20, 226, 961, 964, 1456, 1478, 1789, 2105
BpiI GAAGAC 4 cut(s) 20, 397, 1430, 2246
BpmI CTGGAG 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 3 cut(s) 100, 1073, 2234
Bsa29I ATCGAT 1 cut(s) 2013
BsaBI GATNNNNATC 2 cut(s) 789, 1203
BsaHI GRCGYC 1 cut(s) 1003
BsaJI CCNNGG 3 cut(s) 410, 501, 1476
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse1I ACTGG 4 cut(s) 534, 674, 906, 1667
Bse3DI GCAATG 2 cut(s) 2068, 2125
Bse8I GATNNNNATC 2 cut(s) 789, 1203
BseBI CCWGG 1 cut(s) 1212
BseCI ATCGAT 1 cut(s) 2013
BseDI CCNNGG 3 cut(s) 410, 501, 1476
BseGI GGATG 3 cut(s) 445, 976, 1921
BseJI GATNNNNATC 2 cut(s) 789, 1203
BseMI GCAATG 2 cut(s) 2068, 2125
BseMII CTCAG 5 cut(s) 129, 953, 1145, 1364, 1875
BseNI ACTGG 4 cut(s) 534, 674, 906, 1667
BseSI GKGCMC 1 cut(s) 386
BseXI GCAGC 3 cut(s) 193, 573, 2035
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 2152
BshNI GGYRCC 1 cut(s) 381
BshVI ATCGAT 1 cut(s) 2013
BsiHKAI GWGCWC 1 cut(s) 1687
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 635
BsmAI GTCTC 4 cut(s) 167, 500, 1177, 1278
BsmBI CGTCTC 2 cut(s) 167, 500
BsmFI GGGAC 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 386, 476, 1687
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 4 cut(s) 148, 205, 1527, 1781
BspCNI CTCAG 5 cut(s) 130, 952, 1144, 1365, 1874
BspDI ATCGAT 1 cut(s) 2013
BspLI GGNNCC 2 cut(s) 383, 1034
BspMAI CTGCAG 1 cut(s) 1996
BspPI GGATC 4 cut(s) 798, 1206, 1757, 2044
BspQI GCTCTTC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 381
BsrDI GCAATG 2 cut(s) 2068, 2125
BsrI ACTGG 4 cut(s) 534, 674, 906, 1667
BssECI CCNNGG 3 cut(s) 410, 501, 1476
BssNI GRCGYC 1 cut(s) 1003
BssT1I CCWWGG 2 cut(s) 410, 1476
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 6 cut(s) 335, 1075, 1126, 1188, 1595, 1843
Bst6I CTCTTC 6 cut(s) 33, 181, 200, 1377, 1905, 1997
BstACI GRCGYC 1 cut(s) 1003
BstAPI GCANNNNNTGC 1 cut(s) 952
BstC8I GCNNGC 4 cut(s) 258, 1683, 1881, 2187
BstDEI CTNAG 8 cut(s) 138, 939, 966, 1131, 1373, 1758, 1861, 2304
BstF5I GGATG 3 cut(s) 445, 976, 1921
BstMAI GTCTC 4 cut(s) 167, 500, 1177, 1278
BstMWI GCNNNNNNNGC 8 cut(s) 190, 278, 767, 952, 1109, 1672, 2058, 2067
BstNI CCWGG 1 cut(s) 1212
BstNSI RCATGY 2 cut(s) 635, 1300
BstSCI CCNGG 1 cut(s) 1210
BstSFI CTRYAG 2 cut(s) 778, 1992
BstSLI GKGCMC 1 cut(s) 386
BstV1I GCAGC 3 cut(s) 193, 573, 2035
BstV2I GAAGAC 4 cut(s) 20, 397, 1430, 2246
BstX2I RGATCY 3 cut(s) 962, 1204, 1754
BstYI RGATCY 3 cut(s) 962, 1204, 1754
Bsu15I ATCGAT 1 cut(s) 2013
BsuTUI ATCGAT 1 cut(s) 2013
BtgZI GCGATG 1 cut(s) 1866
BtrI CACGTC 1 cut(s) 1978
BtsCI GGATG 3 cut(s) 445, 976, 1921
BtsI GCAGTG 2 cut(s) 1326, 2140
BtsIMutI CAGTG 5 cut(s) 913, 947, 1326, 1674, 2140
Cac8I GCNNGC 4 cut(s) 258, 1683, 1881, 2187
Cfr13I GGNCC 1 cut(s) 2089
ClaI ATCGAT 1 cut(s) 2013
CseI GACGC 1 cut(s) 992
Csp6I GTAC 2 cut(s) 860, 1481
CspCI CAANNNNNGTGG 2 cut(s) 1158, 1193
CviQI GTAC 2 cut(s) 860, 1481
DdeI CTNAG 8 cut(s) 138, 939, 966, 1131, 1373, 1758, 1861, 2304
DraI TTTAAA 1 cut(s) 1287
Eam1104I CTCTTC 6 cut(s) 33, 181, 200, 1377, 1905, 1997
EarI CTCTTC 6 cut(s) 33, 181, 200, 1377, 1905, 1997
Ecl136II GAGCTC 1 cut(s) 1685
Eco130I CCWWGG 2 cut(s) 410, 1476
Eco24I GRGCYC 2 cut(s) 476, 1687
Eco47I GGWCC 1 cut(s) 2089
Eco53kI GAGCTC 1 cut(s) 1685
Eco57I CTGAAG 3 cut(s) 1401, 1697, 2228
EcoICRI GAGCTC 1 cut(s) 1685
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 2 cut(s) 410, 1476
EcoT22I ATGCAT 1 cut(s) 1471
EcoT38I GRGCYC 2 cut(s) 476, 1687
ErhI CCWWGG 2 cut(s) 410, 1476
Esp3I CGTCTC 2 cut(s) 167, 500
FaqI GGGAC 1 cut(s) 635
FauI CCCGC 2 cut(s) 155, 1534
FauNDI CATATG 2 cut(s) 552, 2223
FbaI TGATCA 1 cut(s) 1432
Fnu4HI GCNGC 3 cut(s) 182, 562, 2024
FokI GGATG 3 cut(s) 452, 983, 1928
FriOI GRGCYC 2 cut(s) 476, 1687
Fsp4HI GCNGC 3 cut(s) 182, 562, 2024
FspBI CTAG 6 cut(s) 455, 732, 810, 930, 1793, 1827
GluI GCNGC 3 cut(s) 182, 562, 2024
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 551
HapII CCGG 1 cut(s) 479
HgaI GACGC 1 cut(s) 992
Hin1I GRCGYC 1 cut(s) 1003
HincII GTYRAC 2 cut(s) 826, 1975
HindII GTYRAC 2 cut(s) 826, 1975
HindIII AAGCTT 5 cut(s) 270, 1251, 1877, 2183, 2210
HpaII CCGG 1 cut(s) 479
HphI GGTGA 5 cut(s) 331, 428, 935, 1081, 1727
Hpy166II GTNNAC 4 cut(s) 826, 926, 1591, 1975
Hpy188III TCNNGA 6 cut(s) 697, 810, 839, 886, 1202, 1379
Hpy8I GTNNAC 4 cut(s) 826, 926, 1591, 1975
Hpy99I CGWCG 2 cut(s) 25, 690
HpyAV CCTTC 5 cut(s) 613, 1311, 1384, 1511, 1533
HpyCH4III ACNGT 6 cut(s) 335, 1075, 1126, 1188, 1595, 1843
HpyCH4IV ACGT 2 cut(s) 160, 1977
HpyCH4V TGCA 7 cut(s) 260, 955, 1469, 1994, 2118, 2133, 2189
HpyF10VI GCNNNNNNNGC 8 cut(s) 190, 278, 767, 952, 1109, 1672, 2058, 2067
HpyF3I CTNAG 8 cut(s) 138, 939, 966, 1131, 1373, 1758, 1861, 2304
HpySE526I ACGT 2 cut(s) 160, 1977
Hsp92I GRCGYC 1 cut(s) 1003
Ksp22I TGATCA 1 cut(s) 1432
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 3 cut(s) 244, 628, 2067
Lsp1109I GCAGC 3 cut(s) 193, 573, 2035
LweI GCATC 8 cut(s) 20, 226, 961, 964, 1456, 1478, 1789, 2105
MaeI CTAG 6 cut(s) 455, 732, 810, 930, 1793, 1827
MaeII ACGT 2 cut(s) 160, 1977
MaeIII GTNAC 6 cut(s) 58, 109, 908, 1069, 1120, 1324
MfeI CAATTG 1 cut(s) 1027
MflI RGATCY 3 cut(s) 962, 1204, 1754
MhlI GDGCHC 3 cut(s) 386, 476, 1687
MluCI AATT 5 cut(s) 315, 830, 1027, 1508, 2157
MlyI GAGTC 5 cut(s) 34, 1350, 1384, 1501, 1853
MmeI TCCRAC 2 cut(s) 1120, 1592
Mph1103I ATGCAT 1 cut(s) 1471
MroXI GAANNNNTTC 1 cut(s) 1521
MseI TTAA 8 cut(s) 98, 318, 678, 852, 1286, 1413, 2142, 2286
MslI CAYNNNNRTG 1 cut(s) 286
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 1212
MssI GTTTAAAC 1 cut(s) 1287
MunI CAATTG 1 cut(s) 1027
MvaI CCWGG 1 cut(s) 1212
MwoI GCNNNNNNNGC 8 cut(s) 190, 278, 767, 952, 1109, 1672, 2058, 2067
NdeI CATATG 2 cut(s) 552, 2223
NlaIV GGNNCC 2 cut(s) 383, 1034
NmuCI GTSAC 4 cut(s) 908, 1069, 1120, 1324
NsiI ATGCAT 1 cut(s) 1471
NspI RCATGY 2 cut(s) 635, 1300
PciSI GCTCTTC 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 1521
PfeI GAWTC 8 cut(s) 358, 515, 543, 700, 795, 842, 882, 1397
PflFI GACNNNGTC 1 cut(s) 2245
PkrI GCNGC 3 cut(s) 183, 563, 2025
PleI GAGTC 5 cut(s) 33, 1349, 1383, 1500, 1853
PmeI GTTTAAAC 1 cut(s) 1287
PpsI GAGTC 5 cut(s) 33, 1349, 1383, 1500, 1853
Psp124BI GAGCTC 1 cut(s) 1687
Psp6I CCWGG 1 cut(s) 1210
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 2 cut(s) 383, 1034
PspPI GGNCC 1 cut(s) 2089
PstI CTGCAG 1 cut(s) 1996
PsuI RGATCY 3 cut(s) 962, 1204, 1754
PsyI GACNNNGTC 1 cut(s) 2245
RsaI GTAC 2 cut(s) 861, 1482
RsaNI GTAC 2 cut(s) 860, 1481
RseI CAYNNNNRTG 1 cut(s) 286
SacI GAGCTC 1 cut(s) 1687
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 8 cut(s) 98, 318, 678, 852, 1286, 1413, 2142, 2286
SatI GCNGC 3 cut(s) 182, 562, 2024
Sau96I GGNCC 1 cut(s) 2089
SchI GAGTC 5 cut(s) 34, 1350, 1384, 1501, 1853
ScrFI CCNGG 1 cut(s) 1212
SduI GDGCHC 3 cut(s) 386, 476, 1687
SfaNI GCATC 8 cut(s) 20, 226, 961, 964, 1456, 1478, 1789, 2105
SfcI CTRYAG 2 cut(s) 778, 1992
SinI GGWCC 1 cut(s) 2089
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 3 cut(s) 79, 1052, 2213
SmoI CTYRAG 3 cut(s) 79, 1052, 2213
Sse9I AATT 5 cut(s) 315, 830, 1027, 1508, 2157
SsiI CCGC 4 cut(s) 148, 205, 1527, 1781
SspMI CTAG 6 cut(s) 455, 732, 810, 930, 1793, 1827
SstI GAGCTC 1 cut(s) 1687
StyD4I CCNGG 1 cut(s) 1210
StyI CCWWGG 2 cut(s) 410, 1476
TaaI ACNGT 6 cut(s) 335, 1075, 1126, 1188, 1595, 1843
TaiI ACGT 2 cut(s) 163, 1980
TasI AATT 5 cut(s) 315, 830, 1027, 1508, 2157
TatI WGTACW 1 cut(s) 859
TfiI GAWTC 8 cut(s) 358, 515, 543, 700, 795, 842, 882, 1397
Tru1I TTAA 8 cut(s) 98, 318, 678, 852, 1286, 1413, 2142, 2286
Tru9I TTAA 8 cut(s) 98, 318, 678, 852, 1286, 1413, 2142, 2286
TscAI CASTG 5 cut(s) 913, 947, 1333, 1674, 2140
TseFI GTSAC 4 cut(s) 908, 1069, 1120, 1324
TseI GCWGC 3 cut(s) 181, 561, 2023
Tsp45I GTSAC 4 cut(s) 908, 1069, 1120, 1324
TspDTI ATGAA 8 cut(s) 171, 569, 1095, 1403, 1634, 1935, 2060, 2178
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 5 cut(s) 913, 947, 1333, 1674, 2140
Tth111I GACNNNGTC 1 cut(s) 2245
VpaK11BI GGWCC 1 cut(s) 2089
XapI RAATTY 1 cut(s) 830
XbaI TCTAGA 1 cut(s) 809
XceI RCATGY 2 cut(s) 635, 1300
XmnI GAANNNNTTC 1 cut(s) 1521
XspI CTAG 6 cut(s) 455, 732, 810, 930, 1793, 1827
Zsp2I ATGCAT 1 cut(s) 1471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.