Rh5DG272600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002054
Physical Location & Seq
Reverse (-)
33177712 .. 33179013
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG272600.1

Sequence Viewer

Length: 1074 bp
ATGGGAAGCAGTTCAGAAGAGTCGCAAGGTTTCTCAAACCCTGTGCTCCGAATTAGAGCAAAGCAGTGGGACCCTCGAATACTCCATTGTTGTCTGACGTCTTTCCTCAAAGTCTTCAACAATGGCCGTCCACGGTTGTGTTCCCGGGGCACTATAGTTGCTCTGGCTCCTGCAGTTCTTGCAGGGCTTTTCAGAGATTTAAGCTTTTTGAAAAACCAAGCCTTTAAGGGTGAGGAGATAATCTCTGTTTCGAGCCCATTTCAGCTGTTGCAGTTGTGGGCGTTGGAGAGGTTTCAGGGTGTGCTTAATAGTCCACCAAAGAGACTTAACCCCTGTGAGCCTAGGGCGGCTCGGTGGAACAAAGTGAACATTAAGATTAGTCTCCCTGATGTGAGGAGAGAGATTAATTTGGCTAAGAATTTTTGGTGGCGGCCTTATGCTGCTGAACTGACCAATTGGCGACATGGTTCTTACTACCTAGCTGATAAACTGTGCTTTTATGATAAAACTACAGACCAGAATTTGCAGTCTTATGTTAAATTCTTGTGTTGTGCTGAGTTGGTTGGAGTAGAAGATTGTAAGGAGAAGTATTTGCCGCACAGGGTGGCAATGCAGTTTGGAATTGATCAAGACCTTCCTGGGGATCCTACTGCATGCTCAGGGTTGGATGGTAACTCGGACACTACCAATGTTCGTTTCTTTCTTCCAGGATGGTTTTTTGAGCCGTGTGTAACTGCTAGATACTCATATTGGTGGGGACTATATAAGTCTGCTCGCACAGATGCAATCAAAGATGGTGTCAAAGTGGCTGTAAAAAAGATTAAGGAGAAGAGTCATTATCACTCCGTGGAAGAGAAGAATTTCAAGGCGCATAAGGCATCTACAAAAGCTTTATCAAAGTGTGAACTTGAAAAGAACCACTTCTGTGCTGTGCCTGAAATCTCAAGAAAATCCAATTGTGCTGTCAGGACACAACCATCAGCCAGTGCTCAATTTCCCAAGAAGTGGTTGTGGCGATATTCCTCTGTTGAAACAAAGGGGACTTGTGGAAAAGAGACCGGCTTGTCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

357

Amino Acids

40.65

Weight (kDa)

9.38

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 48 - 216 2.3e-34 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1063
AatII GACGTC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 1005
AciI CCGC 3 cut(s) 347, 430, 596
AclWI GGATC 2 cut(s) 638, 651
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 4 cut(s) 418, 520, 539, 859
AcyI GRCGYC 1 cut(s) 98
AdeI CACNNNGTG 2 cut(s) 604, 847
AfiI CCNNNNNNNGG 2 cut(s) 640, 1005
AgsI TTSAA 5 cut(s) 118, 211, 865, 911, 1031
AjnI CCWGG 2 cut(s) 637, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AleI CACNNNNGTG 2 cut(s) 136, 924
AluBI AGCT 4 cut(s) 204, 265, 482, 890
AluI AGCT 4 cut(s) 204, 265, 482, 890
Alw21I GWGCWC 2 cut(s) 48, 991
Alw26I GTCTC 3 cut(s) 316, 386, 1049
AlwI GGATC 2 cut(s) 638, 651
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 2 cut(s) 124, 431
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 4 cut(s) 418, 520, 539, 859
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
AseI ATTAAT 1 cut(s) 405
Asp700I GAANNNNTTC 3 cut(s) 10, 860, 920
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 2 cut(s) 145, 146
AsuHPI GGTGA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 152
BamHI GGATCC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 2 cut(s) 48, 991
BbvI GCAGC 1 cut(s) 427
BccI CCATC 4 cut(s) 662, 705, 788, 985
BceAI ACGGC 2 cut(s) 111, 709
BciT130I CCWGG 2 cut(s) 639, 708
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 2 cut(s) 145, 146
BcoDI GTCTC 3 cut(s) 316, 386, 1049
BfaI CTAG 3 cut(s) 342, 479, 738
BfmI CTRYAG 3 cut(s) 153, 171, 510
BisI GCNGC 4 cut(s) 348, 431, 441, 596
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 349, 432, 442, 597
Bme1390I CCNGG 4 cut(s) 145, 146, 639, 708
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 4 cut(s) 71, 72, 168, 645
BmrFI CCNGG 4 cut(s) 145, 146, 639, 708
BmsI GCATC 2 cut(s) 772, 887
BpiI GAAGAC 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu10I CCTNAGC 1 cut(s) 658
BpuEI CTTGAG 1 cut(s) 928
BpuMI CCSGG 2 cut(s) 145, 146
BsaHI GRCGYC 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 1049
BsaJI CCNNGG 6 cut(s) 131, 144, 145, 341, 638, 846
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 1005
Bse118I RCCGGY 1 cut(s) 1058
Bse1I ACTGG 1 cut(s) 984
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 2 cut(s) 639, 708
BseDI CCNNGG 6 cut(s) 131, 144, 145, 341, 638, 846
BseGI GGATG 2 cut(s) 673, 716
BseLI CCNNNNNNNGG 2 cut(s) 640, 1005
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 2 cut(s) 546, 672
BseNI ACTGG 1 cut(s) 984
BseRI GAGGAG 2 cut(s) 248, 409
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 427
BshFI GGCC 2 cut(s) 126, 433
BsiHKAI GWGCWC 2 cut(s) 48, 991
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 145, 1059
BslFI GGGAC 3 cut(s) 83, 771, 1054
BslI CCNNNNNNNGG 2 cut(s) 640, 1005
BsmAI GTCTC 3 cut(s) 316, 386, 1049
BsmFI GGGAC 3 cut(s) 83, 771, 1054
BsnI GGCC 2 cut(s) 126, 433
Bso31I GGTCTC 1 cut(s) 1049
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 4 cut(s) 48, 152, 257, 991
Bsp143I GATC 2 cut(s) 625, 643
BspACI CCGC 3 cut(s) 347, 430, 596
BspANI GGCC 2 cut(s) 126, 433
BspCNI CTCAG 2 cut(s) 547, 671
BspLI GGNNCC 4 cut(s) 71, 72, 168, 645
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 638, 651
BspTNI GGTCTC 1 cut(s) 1049
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 1058
BsrI ACTGG 1 cut(s) 984
BssAI RCCGGY 1 cut(s) 1058
BssECI CCNNGG 6 cut(s) 131, 144, 145, 341, 638, 846
BssMI GATC 2 cut(s) 625, 643
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 639, 708
Bst4CI ACNGT 2 cut(s) 135, 492
Bst6I CTCTTC 3 cut(s) 12, 824, 846
BstACI GRCGYC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 655, 775
BstDEI CTNAG 3 cut(s) 414, 555, 658
BstDSI CCRYGG 2 cut(s) 131, 846
BstF5I GGATG 2 cut(s) 673, 716
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 2 cut(s) 628, 646
BstMAI GTCTC 3 cut(s) 316, 386, 1049
BstMBI GATC 2 cut(s) 625, 643
BstMWI GCNNNNNNNGC 2 cut(s) 179, 875
BstNI CCWGG 2 cut(s) 639, 708
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 4 cut(s) 143, 144, 637, 706
BstSFI CTRYAG 3 cut(s) 153, 171, 510
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 2 cut(s) 126, 433
BtgI CCRYGG 2 cut(s) 131, 846
BtsCI GGATG 2 cut(s) 673, 716
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 991
Cac8I GCNNGC 2 cut(s) 655, 775
CfoI GCGC 1 cut(s) 871
Cfr10I RCCGGY 1 cut(s) 1058
Cfr13I GGNCC 1 cut(s) 70
Cfr9I CCCGGG 1 cut(s) 144
CviAII CATG 2 cut(s) 464, 654
DdeI CTNAG 3 cut(s) 414, 555, 658
DpnI GATC 2 cut(s) 627, 645
DpnII GATC 2 cut(s) 625, 643
DraIII CACNNNGTG 2 cut(s) 604, 847
DrdI GACNNNNNNGTC 1 cut(s) 1063
DseDI GACNNNNNNGTC 1 cut(s) 1063
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 3 cut(s) 12, 824, 846
EarI CTCTTC 3 cut(s) 12, 824, 846
Eco130I CCWWGG 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 1049
Eco47I GGWCC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 637, 706
EcoT14I CCWWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 2 cut(s) 467, 657
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 3 cut(s) 83, 771, 1054
FatI CATG 2 cut(s) 463, 653
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 4 cut(s) 348, 431, 441, 596
FokI GGATG 2 cut(s) 680, 723
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 4 cut(s) 348, 431, 441, 596
FspBI CTAG 3 cut(s) 342, 479, 738
GlaI GCGC 1 cut(s) 870
GluI GCNGC 4 cut(s) 348, 431, 441, 596
HaeIII GGCC 2 cut(s) 126, 433
HapII CCGG 2 cut(s) 145, 1059
HhaI GCGC 1 cut(s) 871
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 2 cut(s) 467, 657
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HindIII AAGCTT 2 cut(s) 202, 888
HinfI GANTC 2 cut(s) 20, 832
HpaII CCGG 2 cut(s) 145, 1059
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 4 cut(s) 131, 314, 367, 905
Hpy188I TCNGA 5 cut(s) 16, 50, 96, 194, 679
Hpy188III TCNNGA 3 cut(s) 629, 945, 967
Hpy8I GTNNAC 4 cut(s) 131, 314, 367, 905
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 2 cut(s) 135, 492
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 7 cut(s) 173, 182, 271, 526, 613, 653, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 875
HpyF3I CTNAG 3 cut(s) 414, 555, 658
HpySE526I ACGT 1 cut(s) 98
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 467, 657
HspAI GCGC 1 cut(s) 869
KflI GGGWCCC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 2 cut(s) 625, 643
LmnI GCTCC 2 cut(s) 51, 172
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 772, 887
MaeI CTAG 3 cut(s) 342, 479, 738
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 671, 730
MalI GATC 2 cut(s) 627, 645
MboI GATC 2 cut(s) 625, 643
MboII GAAGA 7 cut(s) 29, 106, 584, 695, 841, 863, 868
MfeI CAATTG 2 cut(s) 454, 955
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 4 cut(s) 48, 152, 257, 991
MlyI GAGTC 2 cut(s) 29, 841
MmeI TCCRAC 3 cut(s) 264, 544, 645
MnlI CCTC 6 cut(s) 84, 116, 226, 282, 387, 1033
MroXI GAANNNNTTC 3 cut(s) 10, 860, 920
MseI TTAA 8 cut(s) 200, 225, 306, 327, 372, 405, 537, 822
MslI CAYNNNNRTG 3 cut(s) 136, 751, 924
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 2 cut(s) 145, 1059
MspR9I CCNGG 4 cut(s) 145, 146, 639, 708
MunI CAATTG 2 cut(s) 454, 955
MvaI CCWGG 2 cut(s) 639, 708
MwoI GCNNNNNNNGC 2 cut(s) 179, 875
NciI CCSGG 2 cut(s) 145, 146
NdeII GATC 2 cut(s) 625, 643
NlaIII CATG 2 cut(s) 467, 657
NlaIV GGNNCC 4 cut(s) 71, 72, 168, 645
NspI RCATGY 1 cut(s) 657
OliI CACNNNNGTG 2 cut(s) 136, 924
PaeI GCATGC 1 cut(s) 657
PdmI GAANNNNTTC 3 cut(s) 10, 860, 920
PflMI CCANNNNNTGG 1 cut(s) 1005
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 4 cut(s) 349, 432, 442, 597
PleI GAGTC 2 cut(s) 28, 840
PpsI GAGTC 2 cut(s) 28, 840
PpuMI RGGWCCY 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 637, 706
PspGI CCWGG 2 cut(s) 637, 706
PspN4I GGNNCC 4 cut(s) 71, 72, 168, 645
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 265
RseI CAYNNNNRTG 3 cut(s) 136, 751, 924
SaqAI TTAA 8 cut(s) 200, 225, 306, 327, 372, 405, 537, 822
SatI GCNGC 4 cut(s) 348, 431, 441, 596
Sau3AI GATC 2 cut(s) 625, 643
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 2 cut(s) 29, 841
ScrFI CCNGG 4 cut(s) 145, 146, 639, 708
SduI GDGCHC 4 cut(s) 48, 152, 257, 991
SetI ASST 9 cut(s) 31, 101, 206, 267, 293, 480, 484, 636, 892
SfaNI GCATC 2 cut(s) 772, 887
SfcI CTRYAG 3 cut(s) 153, 171, 510
SinI GGWCC 1 cut(s) 70
SmaI CCCGGG 1 cut(s) 146
SmiMI CAYNNNNRTG 3 cut(s) 136, 751, 924
SmlI CTYRAG 1 cut(s) 943
SmoI CTYRAG 1 cut(s) 943
SphI GCATGC 1 cut(s) 657
SsiI CCGC 3 cut(s) 347, 430, 596
SspMI CTAG 3 cut(s) 342, 479, 738
StyD4I CCNGG 4 cut(s) 143, 144, 637, 706
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 135, 492
TaiI ACGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 76, 251
TauI GCSGC 3 cut(s) 350, 433, 598
Tru1I TTAA 8 cut(s) 200, 225, 306, 327, 372, 405, 537, 822
Tru9I TTAA 8 cut(s) 200, 225, 306, 327, 372, 405, 537, 822
TscAI CASTG 2 cut(s) 71, 991
TseI GCWGC 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 835
TspMI CCCGGG 1 cut(s) 144
TspRI CASTG 2 cut(s) 71, 991
Van91I CCANNNNNTGG 1 cut(s) 1005
VpaK11BI GGWCC 1 cut(s) 70
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 4 cut(s) 418, 520, 539, 859
XceI RCATGY 1 cut(s) 657
XmaI CCCGGG 1 cut(s) 144
XmaJI CCTAGG 1 cut(s) 341
XmnI GAANNNNTTC 3 cut(s) 10, 860, 920
XspI CTAG 3 cut(s) 342, 479, 738
ZraI GACGTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.