Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002054

Physical Location & Seq

Genomic Coordinates Forward (+)

60935281 .. 60935613

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGAAGAGAACAGAAACGTCACATTCTCATCGCATATACGAGGAACGAGAAGAGAAACTCGTGTCTTCAAAAGACGGGAAGCAGTTCAGAAGAATCTCAAGGTTTCTTAAACCCTGTGCTCCGAATTCGAGCAAAGCAGTGGGACCCTCAAATACTCCATTGTTGTCTGACGTCTTTCCTCAGAGTCTTCAACAATGGCCGTCCACGGTTGTGTTCCCGGGTTGCAAGAAGCCCCAGAAAAAATGGGTGGAGTGGATTGATAGGCTGGCCGGAAAGTACTGTACTATTTGGAACCAAGCTGGGATTTGCGATGCTATTATGAGCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

110

Amino Acids

12.56

Weight (kDa)

9.61

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32120 AT1G50750 AT1G50760 AT1G50770 AT1G50790 AT1G50820 AT1G50820 AT1G50830 AT1G51538 AT4G16050 AT5G18510
fragaria_vesca	FvH4_3g22270 FvH4_6g23881 FvH4_7g03072
malus_domestica	MD03G1206300.v1.1
prunus_persica	Prupe.4G209700_v2.0.a1 Prupe.4G209800_v2.0.a1
pyrus_communis	pycom03g15550
rosa_chinensis	RchiOBHm_Chr5g0038341 RchiOBHm_Chr5g0038431 RchiOBHm_Chr5g0038611
rosa_laevigata	RLG00000033849 RLG00000033852 RLG00000033857 RLG00000033858
rosa_multiflora	Rmu_sc0009149.1_g000008 Rmu_sc0027059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042500 Rroxscaffold_1G00042570 Rroxscaffold_1G00042600 Rroxscaffold_1G00042610 Rroxscaffold_1G00042660
rosa_rugosa	Rorug05G0172100
rosa_samantha	Rh5AG259500 Rh5AG259900 Rh5BG263400 Rh5BG263800 Rh5CG295800 Rh5CG296100 Rh5DG272300 Rh5DG272600
rosa_wichuraiana	Rw0G013280 Rw5G024300 Rw5G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AcoI	YGGCCR	2 cut(s)	200, 270
AcsI	RAATTY	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	2 cut(s)	281, 286
AgsI	TTSAA	2 cut(s)	72, 194
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	302, 327
AluI	AGCT	2 cut(s)	302, 327
Alw21I	GWGCWC	2 cut(s)	124, 329
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	2 cut(s)	200, 270
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	2 cut(s)	221, 222
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	60, 182
Bbv12I	GWGCWC	2 cut(s)	124, 329
BceAI	ACGGC	1 cut(s)	187
BcnI	CCSGG	2 cut(s)	221, 222
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	221, 222
Bme18I	GGWCC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	147, 148, 296
BmrFI	CCNGG	2 cut(s)	221, 222
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	60, 182
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	2 cut(s)	221, 222
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	207, 220
BseDI	CCNNGG	2 cut(s)	207, 220
BseMII	CTCAG	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	2 cut(s)	202, 272
BsiHKAI	GWGCWC	2 cut(s)	124, 329
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	221, 273
BslFI	GGGAC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	202, 272
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	124, 329
BspANI	GGCC	2 cut(s)	202, 272
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	147, 148, 296
BssECI	CCNNGG	2 cut(s)	207, 220
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	211, 284
Bst6I	CTCTTC	2 cut(s)	2, 48
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	219, 220
BstV2I	GAAGAC	2 cut(s)	60, 182
BsuRI	GGCC	2 cut(s)	202, 272
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	2 cut(s)	17, 327
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	146
Cfr9I	CCCGGG	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	280, 285
CviJI	RGCY	6 cut(s)	202, 235, 268, 272, 302, 327
CviKI_1	RGCY	6 cut(s)	202, 235, 268, 272, 302, 327
CviQI	GTAC	2 cut(s)	280, 285
DdeI	CTNAG	1 cut(s)	183
EaeI	YGGCCR	2 cut(s)	200, 270
Eam1104I	CTCTTC	2 cut(s)	2, 48
EarI	CTCTTC	2 cut(s)	2, 48
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	329
FaiI	YATR	3 cut(s)	38, 40, 323
FaqI	GGGAC	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	329
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	202, 272
HapII	CCGG	2 cut(s)	221, 273
Hin1I	GRCGYC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	96, 187
HpaII	CCGG	2 cut(s)	221, 273
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	4 cut(s)	92, 126, 172, 186
Hpy8I	GTNNAC	1 cut(s)	207
HpyCH4III	ACNGT	2 cut(s)	211, 284
HpyCH4IV	ACGT	2 cut(s)	20, 174
HpyCH4V	TGCA	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	20, 174
Hsp92I	GRCGYC	1 cut(s)	174
KflI	GGGWCCC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	130, 234, 251, 254, 286, 288
LweI	GCATC	1 cut(s)	304
MaeII	ACGT	2 cut(s)	20, 174
MaeIII	GTNAC	1 cut(s)	21
MboII	GAAGA	5 cut(s)	19, 60, 65, 105, 182
MhlI	GDGCHC	2 cut(s)	124, 329
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	37, 160, 192
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	2 cut(s)	221, 273
MspR9I	CCNGG	2 cut(s)	221, 222
NciI	CCSGG	2 cut(s)	221, 222
NlaIV	GGNNCC	3 cut(s)	147, 148, 296
NmuCI	GTSAC	1 cut(s)	21
OliI	CACNNNNGTG	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	147, 148, 296
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
RsaI	GTAC	2 cut(s)	281, 286
RsaNI	GTAC	2 cut(s)	280, 285
RseI	CAYNNNNRTG	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	221, 222
SduI	GDGCHC	2 cut(s)	124, 329
SetI	ASST	5 cut(s)	23, 107, 177, 304, 329
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	1 cut(s)	146
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	127
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	219, 220
TaaI	ACNGT	2 cut(s)	211, 284
TaiI	ACGT	2 cut(s)	23, 177
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	127
TatI	WGTACW	2 cut(s)	279, 284
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	21
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	127
XmaI	CCCGGG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.