RchiOBHm_Chr5g0038611

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002054
Physical Location & Seq
Reverse (-)
33260405 .. 33261061
657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31722

Sequence Viewer

Length: 657 bp
ATGAGCTCGAAGTATGAGACCAACTTTAACAAGGATTTGGTGCTGGTTTTGGCCGAGTTTTGGTGCTCGGAGACTAATACATTCGTGTTTGATTGGGGCGAAGCGACGATCACAATGGAGGATGTGATGCTTCTTGGTGGGTTTTCGGTTCTGGGTAAGCAGGTGACGAGGCCCATTAATGGGGTGTTGATGGAAACAGTGGAGGAGATGGAGAAGAAGAAGACGGAGCTGACGAGAACTCCGGCGAAGAAAGCTTATCACTTTAACTGGATGACCCATTTTATGAAGCTTCAGGACTACAAGCATGAACATGTGGCATTCCTGTTTCTGTGGTTGGCAAGGTTTGTGTTTCCCTCTCTTCCTGAAGAAAGCTTAGGCAAACATGTGTTTCCAATTGCGGTTCTTTTGTCACAGGGCACTAGAGTTGCTCTGGCTCCCGCAGTTCTTGCAGGGCTTTTCAGAGATTTAAGCTTTTTGAAAAACCAAGCCTTTAAGAGTGAGGAGATAATCTCTGTTTCAAGCCCATTTCAGCTGTTGCAGTTGTGGGCGTTGGAGAGGTTTCAAGGTGTGCTTAAGAGTCCACCAAAGAGACTTAACCCCTGTGAGCCTAGGGCGGCTCGGTGGAACAATGTGAACAGATTAGTCTCCCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

218

Amino Acids

25.07

Weight (kDa)

8.85

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 1 - 213 4e-63 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc36I ACCTGC 1 cut(s) 151
AciI CCGC 3 cut(s) 398, 438, 614
AcoI YGGCCR 1 cut(s) 51
AcuI CTGAAG 2 cut(s) 275, 384
AfiI CCNNNNNNNGG 3 cut(s) 60, 179, 180
AflII CTTAAG 1 cut(s) 572
AflIII ACRYGT 2 cut(s) 310, 382
AgsI TTSAA 3 cut(s) 478, 519, 563
AluBI AGCT 7 cut(s) 6, 229, 254, 289, 372, 471, 532
AluI AGCT 7 cut(s) 6, 229, 254, 289, 372, 471, 532
Alw21I GWGCWC 2 cut(s) 8, 68
Alw26I GTCTC 4 cut(s) 11, 65, 583, 649
AoxI GGCC 2 cut(s) 51, 170
AseI ATTAAT 1 cut(s) 177
AspA2I CCTAGG 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 175
AvrII CCTAGG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 8, 68
BccI CCATC 2 cut(s) 184, 202
BcoDI GTCTC 4 cut(s) 11, 65, 583, 649
BfaI CTAG 2 cut(s) 420, 609
BfrI CTTAAG 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 1 cut(s) 615
BlnI CCTAGG 1 cut(s) 608
BlsI GCNGC 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 435
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu10I CCTNAGC 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 608
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 179, 180
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 2 cut(s) 127, 276
BseLI CCNNNNNNNGG 3 cut(s) 60, 179, 180
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 218, 515
BseSI GKGCMC 1 cut(s) 419
BshFI GGCC 2 cut(s) 53, 172
BsiHKAI GWGCWC 2 cut(s) 8, 68
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 60, 179, 180
BsmAI GTCTC 4 cut(s) 11, 65, 583, 649
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 2 cut(s) 53, 172
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 8, 68, 419
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 3 cut(s) 398, 438, 614
BspANI GGCC 2 cut(s) 53, 172
BspLI GGNNCC 1 cut(s) 435
BspMI ACCTGC 1 cut(s) 151
BspTI CTTAAG 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 127, 276
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 4 cut(s) 11, 65, 583, 649
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 251, 446
BstNSI RCATGY 2 cut(s) 314, 386
BstSLI GKGCMC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 53, 172
BtsCI GGATG 2 cut(s) 127, 276
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 171
CviAII CATG 3 cut(s) 305, 311, 383
DdeI CTNAG 1 cut(s) 373
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 275, 384
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 3 cut(s) 308, 314, 386
FaiI YATR 5 cut(s) 15, 284, 306, 312, 384
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 3 cut(s) 304, 310, 382
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 2 cut(s) 134, 283
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 2 cut(s) 420, 609
GluI GCNGC 1 cut(s) 615
HaeIII GGCC 2 cut(s) 53, 172
HapII CCGG 1 cut(s) 242
Hin1II CATG 3 cut(s) 308, 314, 386
HindIII AAGCTT 4 cut(s) 252, 287, 370, 469
HinfI GANTC 1 cut(s) 577
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 581, 634
Hpy188I TCNGA 2 cut(s) 70, 461
Hpy188III TCNNGA 2 cut(s) 293, 362
Hpy8I GTNNAC 2 cut(s) 581, 634
Hpy99I CGWCG 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 449, 538
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 446
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 3 cut(s) 308, 314, 386
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 226, 439
LweI GCATC 1 cut(s) 117
MaeI CTAG 2 cut(s) 420, 609
MaeIII GTNAC 2 cut(s) 163, 408
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 6 cut(s) 226, 229, 232, 259, 350, 377
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 3 cut(s) 8, 68, 419
MluCI AATT 1 cut(s) 393
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 6 cut(s) 112, 162, 196, 364, 493, 549
MseI TTAA 7 cut(s) 27, 177, 264, 467, 492, 573, 594
MslI CAYNNNNRTG 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 532
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 393
Mva1269I GAATGC 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 251, 446
NdeII GATC 1 cut(s) 108
NlaIII CATG 3 cut(s) 308, 314, 386
NlaIV GGNNCC 1 cut(s) 435
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 163, 408
NspI RCATGY 2 cut(s) 314, 386
PaqCI CACCTGC 1 cut(s) 151
PciI ACATGT 2 cut(s) 310, 382
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PctI GAATGC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 616
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PscI ACATGT 2 cut(s) 310, 382
PshBI ATTAAT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 7 cut(s) 27, 177, 264, 467, 492, 573, 594
SatI GCNGC 1 cut(s) 615
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 171
SchI GAGTC 1 cut(s) 586
SduI GDGCHC 3 cut(s) 8, 68, 419
SfaNI GCATC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 1 cut(s) 393
SsiI CCGC 3 cut(s) 398, 438, 614
SspMI CTAG 2 cut(s) 420, 609
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 393
TauI GCSGC 1 cut(s) 617
Tru1I TTAA 7 cut(s) 27, 177, 264, 467, 492, 573, 594
Tru9I TTAA 7 cut(s) 27, 177, 264, 467, 492, 573, 594
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 2 cut(s) 163, 408
Tsp45I GTSAC 2 cut(s) 163, 408
TspDTI ATGAA 2 cut(s) 299, 321
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 204
Vha464I CTTAAG 1 cut(s) 572
VspI ATTAAT 1 cut(s) 177
XceI RCATGY 2 cut(s) 314, 386
XmaJI CCTAGG 1 cut(s) 608
XspI CTAG 2 cut(s) 420, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.