Rorug05G0172100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002054
Physical Location & Seq
Reverse (-)
16050467 .. 16052264
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0172100.1

Sequence Viewer

Length: 975 bp
ATGGCAGCAACCCAAATCCCAGTAGTGGTTCTTGAATCCTCCGATGGCCGCAGGACCATGCCTGTGCTTGGCTTCGGCACAGCATCCAACAATTTACAACCAGAGGTTTTGATAGAAGCTGTTCTCGAGGCCATCAAGCTCGGTTACCGCCACTTCGACACGGCTTCCGTGTACGGCTCGGAGCAGAGTCTGGGAGAAGCCATAGCCCAAGCACTCAAACTCGACCTCGTGGCTTCTCGGGACGAGCTCTTCATCACTTCCAAGCTTTGGTGTAATGATGCTCACCCTGATTTGGTTCTTCCTGCTCTAAAGAAATCGCTTCAGTCTCTTCAATTGGAGTACCTTGATCTGTATCTGATTCACTGGCCCATCAGTGGCACGCCTGGGAAATCGGTGGAATTTCCCAAGGAGAAGGACCAAATGCCGATGGACTTCAAGGGTGTGTGGGGAGCCATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGTAATTTCTCTACCAAGAAGACTGAGAATATGCTCTCTTTTGCTACTATTCCTCCTTCAGTCAACCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTCAGAGACTTCTGCAAGGCCAACGGTATGGTTGTGACTGCCTTCTCCCCATTGGGTGCCATAGGAGCCAGTTGGGGTACCAATCATGTTCTCGAAAGCAAAGTGCTCAATGAAATCGCCGAGGCTCGGGGAAAGACTGTTGTTCAGGTGTGCATTAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCAAATCCCACAGCACAAAATGATGGTTCGAGAAGAAGAGTTGGTTACGGCTACCGGACCATACAAGTCCCTTGATGAGTTATGGGATGGAGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

324

Amino Acids

36.25

Weight (kDa)

5.32

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 294 4.9e-56 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 820
Acc36I ACCTGC 1 cut(s) 820
Acc65I GGTACC 1 cut(s) 677
AccB1I GGYRCC 2 cut(s) 656, 677
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 2 cut(s) 49, 148
AclWI GGATC 1 cut(s) 867
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 2 cut(s) 305, 540
AfaI GTAC 3 cut(s) 173, 341, 679
AfiI CCNNNNNNNGG 6 cut(s) 25, 68, 267, 292, 374, 726
AgsI TTSAA 4 cut(s) 35, 332, 436, 817
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 7 cut(s) 119, 139, 247, 265, 464, 601, 798
AluI AGCT 7 cut(s) 119, 139, 247, 265, 464, 601, 798
Alw21I GWGCWC 2 cut(s) 249, 708
Alw26I GTCTC 3 cut(s) 330, 463, 600
AlwI GGATC 1 cut(s) 867
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 3 cut(s) 125, 237, 726
AoxI GGCC 5 cut(s) 46, 129, 365, 475, 618
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 677
AspS9I GGNCC 4 cut(s) 54, 366, 415, 932
AsuHPI GGTGA 2 cut(s) 275, 472
AvaI CYCGRG 3 cut(s) 125, 237, 726
AvaII GGWCC 3 cut(s) 54, 415, 932
BanI GGYRCC 2 cut(s) 656, 677
BanII GRGCYC 2 cut(s) 249, 581
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 249, 708
BbvI GCAGC 1 cut(s) 17
BccI CCATC 7 cut(s) 38, 140, 377, 421, 753, 892, 956
BceAI ACGGC 3 cut(s) 177, 190, 939
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 3 cut(s) 330, 463, 600
BfuAI ACCTGC 1 cut(s) 820
BisI GCNGC 2 cut(s) 6, 49
BlsI GCNGC 2 cut(s) 7, 50
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 3 cut(s) 54, 415, 932
BmeT110I CYCGRG 3 cut(s) 125, 237, 726
BmgT120I GGNCC 4 cut(s) 54, 366, 415, 932
BmiI GGNNCC 4 cut(s) 451, 658, 667, 679
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 2 cut(s) 14, 850
BmsI GCATC 2 cut(s) 92, 268
BmuI ACTGGG 2 cut(s) 14, 850
BpiI GAAGAC 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 4 cut(s) 383, 405, 453, 720
BsaWI WCCGGW 1 cut(s) 929
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 68, 267, 292, 374, 726
Bse1I ACTGG 4 cut(s) 20, 368, 669, 845
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 4 cut(s) 383, 405, 453, 720
BseGI GGATG 2 cut(s) 83, 967
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 6 cut(s) 25, 68, 267, 292, 374, 726
BseMII CTCAG 3 cut(s) 479, 513, 616
BseNI ACTGG 4 cut(s) 20, 368, 669, 845
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 848
BshFI GGCC 5 cut(s) 48, 131, 367, 477, 620
BshNI GGYRCC 2 cut(s) 656, 677
BsiHKAI GWGCWC 2 cut(s) 249, 708
BsiHKCI CYCGRG 3 cut(s) 125, 237, 726
BsiSI CCGG 1 cut(s) 930
BslFI GGGAC 2 cut(s) 254, 928
BslI CCNNNNNNNGG 6 cut(s) 25, 68, 267, 292, 374, 726
BsmAI GTCTC 3 cut(s) 330, 463, 600
BsmFI GGGAC 2 cut(s) 254, 928
BsnI GGCC 5 cut(s) 48, 131, 367, 477, 620
BsoBI CYCGRG 3 cut(s) 125, 237, 726
Bsp1286I GDGCHC 3 cut(s) 249, 581, 708
Bsp143I GATC 3 cut(s) 346, 859, 870
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 2 cut(s) 49, 148
BspANI GGCC 5 cut(s) 48, 131, 367, 477, 620
BspCNI CTCAG 3 cut(s) 478, 514, 615
BspLI GGNNCC 4 cut(s) 451, 658, 667, 679
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 1 cut(s) 867
BspQI GCTCTTC 2 cut(s) 254, 788
BspT107I GGYRCC 2 cut(s) 656, 677
BsrI ACTGG 4 cut(s) 20, 368, 669, 845
BssECI CCNNGG 4 cut(s) 383, 405, 453, 720
BssMI GATC 3 cut(s) 346, 859, 870
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 405, 453
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 626, 739
Bst6I CTCTTC 5 cut(s) 254, 333, 788, 849, 906
BstAPI GCANNNNNTGC 2 cut(s) 785, 826
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 3 cut(s) 465, 522, 602
BstDSI CCRYGG 1 cut(s) 453
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 83, 967
BstKTI GATC 3 cut(s) 349, 862, 873
BstMAI GTCTC 3 cut(s) 330, 463, 600
BstMBI GATC 3 cut(s) 346, 859, 870
BstMWI GCNNNNNNNGC 3 cut(s) 665, 785, 826
BstNI CCWGG 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 859
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 1 cut(s) 859
BsuRI GGCC 5 cut(s) 48, 131, 367, 477, 620
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 83, 967
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 3 cut(s) 361, 379, 795
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 54, 366, 415, 932
Csp6I GTAC 3 cut(s) 172, 340, 678
CviAII CATG 3 cut(s) 58, 454, 686
CviQI GTAC 3 cut(s) 172, 340, 678
DdeI CTNAG 3 cut(s) 465, 522, 602
DpnI GATC 3 cut(s) 348, 861, 872
DpnII GATC 3 cut(s) 346, 859, 870
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 5 cut(s) 254, 333, 788, 849, 906
EarI CTCTTC 5 cut(s) 254, 333, 788, 849, 906
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 405, 453
Eco24I GRGCYC 2 cut(s) 249, 581
Eco47I GGWCC 3 cut(s) 54, 415, 932
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 305, 540
Eco88I CYCGRG 3 cut(s) 125, 237, 726
Eco91I GGTNACC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 405, 453
EcoT38I GRGCYC 2 cut(s) 249, 581
ErhI CCWWGG 2 cut(s) 405, 453
FaeI CATG 3 cut(s) 61, 457, 689
FaiI YATR 9 cut(s) 59, 203, 455, 530, 629, 662, 687, 937, 958
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 2 cut(s) 254, 928
FatI CATG 3 cut(s) 57, 453, 685
Fnu4HI GCNGC 2 cut(s) 6, 49
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 2 cut(s) 249, 581
Fsp4HI GCNGC 2 cut(s) 6, 49
GluI GCNGC 2 cut(s) 6, 49
HaeIII GGCC 5 cut(s) 48, 131, 367, 477, 620
HapII CCGG 1 cut(s) 930
Hin1II CATG 3 cut(s) 61, 457, 689
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 4 cut(s) 35, 187, 358, 495
HpaII CCGG 1 cut(s) 930
HphI GGTGA 2 cut(s) 275, 472
Hpy166II GTNNAC 2 cut(s) 172, 562
Hpy188I TCNGA 5 cut(s) 43, 181, 357, 468, 605
Hpy188III TCNNGA 6 cut(s) 32, 125, 239, 692, 863, 905
Hpy8I GTNNAC 2 cut(s) 172, 562
HpyAV CCTTC 3 cut(s) 406, 564, 652
HpyCH4III ACNGT 2 cut(s) 626, 739
HpyCH4V TGCA 4 cut(s) 615, 753, 788, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 665, 785, 826
HpyF3I CTNAG 3 cut(s) 465, 522, 602
Hsp92II CATG 3 cut(s) 61, 457, 689
KpnI GGTACC 1 cut(s) 681
Kzo9I GATC 3 cut(s) 346, 859, 870
LguI GCTCTTC 2 cut(s) 254, 788
LmnI GCTCC 4 cut(s) 181, 449, 665, 776
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 92, 268
MaeIII GTNAC 3 cut(s) 143, 634, 919
MalI GATC 3 cut(s) 348, 861, 872
MboI GATC 3 cut(s) 346, 859, 870
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 3 cut(s) 249, 581, 708
MluCI AATT 4 cut(s) 91, 332, 398, 502
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 49, 97, 121, 236, 488, 561, 715, 804, 850
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 973
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 1 cut(s) 930
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 665, 785, 826
NcoI CCATGG 1 cut(s) 453
NdeII GATC 3 cut(s) 346, 859, 870
NlaIII CATG 3 cut(s) 61, 457, 689
NlaIV GGNNCC 4 cut(s) 451, 658, 667, 679
NmeAIII GCCGAG 1 cut(s) 745
NmuCI GTSAC 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 125
PaqCI CACCTGC 1 cut(s) 820
PciSI GCTCTTC 2 cut(s) 254, 788
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 35, 358, 495
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 2 cut(s) 7, 50
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 382
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 4 cut(s) 451, 658, 667, 679
PspPI GGNCC 4 cut(s) 54, 366, 415, 932
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 3 cut(s) 173, 341, 679
RsaNI GTAC 3 cut(s) 172, 340, 678
RseI CAYNNNNRTG 1 cut(s) 62
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 254, 788
SaqAI TTAA 1 cut(s) 973
SatI GCNGC 2 cut(s) 6, 49
Sau3AI GATC 3 cut(s) 346, 859, 870
Sau96I GGNCC 4 cut(s) 54, 366, 415, 932
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 3 cut(s) 249, 581, 708
SfaNI GCATC 2 cut(s) 92, 268
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 3 cut(s) 54, 415, 932
SlaI CTCGAG 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 125, 863
SmoI CTYRAG 2 cut(s) 125, 863
Sse9I AATT 4 cut(s) 91, 332, 398, 502
SsiI CCGC 2 cut(s) 49, 148
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 2 cut(s) 405, 453
TaaI ACNGT 2 cut(s) 626, 739
TaqI TCGA 6 cut(s) 126, 156, 222, 693, 837, 904
TasI AATT 4 cut(s) 91, 332, 398, 502
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 3 cut(s) 35, 358, 495
Tru1I TTAA 1 cut(s) 973
Tru9I TTAA 1 cut(s) 973
TscAI CASTG 3 cut(s) 368, 379, 795
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 2 cut(s) 241, 726
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 3 cut(s) 368, 379, 795
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 3 cut(s) 54, 415, 932
XapI RAATTY 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.